TCONS_00027762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027762
Unique NameTCONS_00027762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027762 ID=TCONS_00027762|Name=TCONS_00027762|organism=Clytia hemisphaerica|type=transcript|length=597bp
ATGCAGGAGGCCAACAATGCTCAAATATATACAAACAGACTGAGGTAACA
GGAAACGGGCTAGATACGCAGCATACATGCAGAGGTGCACACATTTAGCA
GGAGTTGGCAGTAGATCAAGCATATTGCAAAACTGAAGATAGACCTTGCG
GTGAGTACGGTAGGCCTTGCGGGTATTGATAGCATAGGTGGCTTCACGAT
AGAACTGCACATCTGCCAGCAGCGAAGACGCAAACTCTAAAAAGCAGAGT
GAAGACGTGAGCCGGAGCCATGCAAGCCAAGAAGAAAACAGAAACAGTTC
ACAGACAACATTATCAGTGGAAGCAGATTGACCAAAATAGTCACAAAGAT
TGTTCGTTCTGTGTGAACTGACGAGAAGAAGAAGGTTCAGTGTTCGAGCC
AGAATTCAAAAAAGGAAGGACATTACCAAACGAAGAGAAAGGATTCaaag
tttgttgttgttgttgagaagAGAGGAGCTGGCGGTGAAGCAAAGTAGAC
ATTGAATCGGTAGGAAAATTGTCAAACATGGCGGATTGAGCGGTATGGTT
TTCTTCTGAGGAACCGTTGCGTGTATCGGGCGGAGGGGCAGAGCGAG
Run BLAST on NCBI

transcript from alignment at sc0000644:43352..43948

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027762 ID=TCONS_00027762|Name=TCONS_00027762|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at sc0000644:43352..43948 (Clytia hemisphaerica)
CTCGCTCTGCCCCTCCGCCCGATACACGCAACGGTTCCTCAGAAGAAAAC
CATACCGCTCAATCCGCCATGTTTGACAATTTTCCTACCGATTCAATGTC
TACTTTGCTTCACCGCCAGCTCCTCTcttctcaacaacaacaacaaactt
tGAATCCTTTCTCTTCGTTTGGTAATGTCCTTCCTTTTTTGAATTCTGGC
TCGAACACTGAACCTTCTTCTTCTCGTCAGTTCACACAGAACGAACAATC
TTTGTGACTATTTTGGTCAATCTGCTTCCACTGATAATGTTGTCTGTGAA
CTGTTTCTGTTTTCTTCTTGGCTTGCATGGCTCCGGCTCACGTCTTCACT
CTGCTTTTTAGAGTTTGCGTCTTCGCTGCTGGCAGATGTGCAGTTCTATC
GTGAAGCCACCTATGCTATCAATACCCGCAAGGCCTACCGTACTCACCGC
AAGGTCTATCTTCAGTTTTGCAATATGCTTGATCTACTGCCAACTCCTGC
TAAATGTGTGCACCTCTGCATGTATGCTGCGTATCTAGCCCGTTTCCTGT
TACCTCAGTCTGTTTGTATATATTTGAGCATTGTTGGCCTCCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015678XLOC_015678Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027762-exon-sc0000644-1491911889:43352..43948TCONS_00027762-exon-sc0000644-1491911889:43352..43948Clytia hemisphaericaexon
TCONS_00027762-exon-sc0000644-1510915933:43352..43948TCONS_00027762-exon-sc0000644-1510915933:43352..43948Clytia hemisphaericaexon
TCONS_00027762-exon-sc0000644-1575043694:43352..43948TCONS_00027762-exon-sc0000644-1575043694:43352..43948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000644supercontigsc0000644:43352..43948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.698304	0.761535	0.518772	1.03687	2.40515	1.08441	1.57933	1.73081	1.93443	2.53921	2.04704	2.22607	1.75598	1.60103	0.798806	1.31998	1.21684	1.20541	0.86296	0.818905	0.757676	1.1515	0	0.392616	1.91372	1.54921	0.209639	0	0.595145	0.0448239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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