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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027765 ID=TCONS_00027765|Name=TCONS_00027765|organism=Clytia hemisphaerica|type=transcript|length=949bp
GAAACAGTTGTTGATAAGTTGGATTTCAGTGAATTTGATTATGTTTCTTC
TGATAATGAAATTGATGAATGCCTAGATGTTTGTGCTCAAACTTTGAAGT
CCGAACTTGCTTCATGGGCATAAAAAACCCGTCTTCCTAGGGATTCAACG
AATGAGCTCCTTGGTATTCTTAGAAATCATGGAATTGAGGTTCCAAAGGA
TTCAAGGACACTATTAAAAACGCATCGAAGTGTTGAAGTTCTAAAGAAAT
GTGGTGGAACACATTTTTACTTTGGAATAAGGAATGGAATTTGCTCAGCT
ATGAATTTTCTCAGTGACCCTGTTACTGCGATTGAGTTAGCAGTTAATGT
GGATGGTTTACCCTTAGAAAAATCAACCTCCTCccaattttggccaattt
taggCTCGATCAATTTTTCTGAACATGTGTTTATTATTGCAATTTTTCAT
GGATATTCAAAGCCTGACTCTGTTGAAGAATTTCTCAATGACTTTAtttt
agaagcaaccgatatttTACAAAATGGTTTGTTACTTAGAGATGAATTTT
ACCCCTTTTCCATCAACTGTTTTATATGTGATGCACCTGCTAGAGCGTTT
ATGAAATGTATTATTGGACATATTGGGTACAATGCTTGCGAGCGTTGTGA
AATTGTTGGAGAAAGAGTGGAGAATAGAACTGTTTTCAATAAAGGTACCT
ATGAAGAAAAGAAACGAACTGGGCAGGATTTTAGCGCAGGAAGTTATCTG
CCAAACCATAAAAAAGAAATGAGTCCATTATTGCAGTTGGGTATTGACTG
TGTTGATCAATTTCCACTCGACTATatgcatttggttggtttgGGTGTTA
CAAAAcgtattttgatgtttctaatgaAAGGGCCTAACGTTTGTAGACTT
TCACACAATTTAATTAATCAAATTTCAGATAGACTGATACTTCACAATG Run BLAST on NCBI protein sequence of TCONS_00027765-protein >TCONS_00027765-protein ID=TCONS_00027765-protein|Name=TCONS_00027765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MNFLSDPVTAIELAVNVDGLPLEKSTSSQFWPILGSINFSEHVFIIAIFH
GYSKPDSVEEFLNDFILEATDILQNGLLLRDEFYPFSINCFICDAPARAF
MKCIIGHIGYNACERCEIVGERVENRTVFNKGTYEEKKRTGQDFSAGSYL
PNHKKEMSPLLQLGIDCVDQFPLDYMHLVGLGVTKRILMFLMKGPNVCRL
SHNLINQISDRLILHN Run BLAST on NCBI transcript from alignment at sc0000644:59264..60212 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027765 ID=TCONS_00027765|Name=TCONS_00027765|organism=Clytia hemisphaerica|type=transcript|length=949bp|location=Sequence derived from alignment at sc0000644:59264..60212 (Clytia hemisphaerica)
CATTGTGAAGTATCAGTCTATCTGAAATTTGATTAATTAAATTGTGTGAA
AGTCTACAAACGTTAGGCCCTTtcattagaaacatcaaaatacgTTTTGT
AACACCcaaaccaaccaaatgcatATAGTCGAGTGGAAATTGATCAACAC
AGTCAATACCCAACTGCAATAATGGACTCATTTCTTTTTTATGGTTTGGC
AGATAACTTCCTGCGCTAAAATCCTGCCCAGTTCGTTTCTTTTCTTCATA
GGTACCTTTATTGAAAACAGTTCTATTCTCCACTCTTTCTCCAACAATTT
CACAACGCTCGCAAGCATTGTACCCAATATGTCCAATAATACATTTCATA
AACGCTCTAGCAGGTGCATCACATATAAAACAGTTGATGGAAAAGGGGTA
AAATTCATCTCTAAGTAACAAACCATTTTGTAaaatatcggttgcttcta
aaaTAAAGTCATTGAGAAATTCTTCAACAGAGTCAGGCTTTGAATATCCA
TGAAAAATTGCAATAATAAACACATGTTCAGAAAAATTGATCGAGcctaa
aattggccaaaattggGAGGAGGTTGATTTTTCTAAGGGTAAACCATCCA
CATTAACTGCTAACTCAATCGCAGTAACAGGGTCACTGAGAAAATTCATA
GCTGAGCAAATTCCATTCCTTATTCCAAAGTAAAAATGTGTTCCACCACA
TTTCTTTAGAACTTCAACACTTCGATGCGTTTTTAATAGTGTCCTTGAAT
CCTTTGGAACCTCAATTCCATGATTTCTAAGAATACCAAGGAGCTCATTC
GTTGAATCCCTAGGAAGACGGGTTTTTTATGCCCATGAAGCAAGTTCGGA
CTTCAAAGTTTGAGCACAAACATCTAGGCATTCATCAATTTCATTATCAG
AAGAAACATAATCAAATTCACTGAAATCCAACTTATCAACAACTGTTTC Coding sequence (CDS) from alignment at sc0000644:59264..60212 >TCONS_00027765 ID=TCONS_00027765|Name=TCONS_00027765|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000644:59264..60212 (Clytia hemisphaerica)
ATTGTGAAGTATCAGTCTATCTGAAATTTGATTAATTAAATTGTGTGAAA
GTCTACAAACGTTAGGCCCTTtcattagaaacatcaaaatacgTTTTGTA
ACACCcaaaccaaccaaatgcatATAGTCGAGTGGAAATTGATCAACACA
GTCAATACCCAACTGCAATAATGGACTCATTTCTTTTTTATGGTTTGGCA
GATAACTTCCTGCGCTAAAATCCTGCCCAGTTCGTTTCTTTTCTTCATAG
GTACCTTTATTGAAAACAGTTCTATTCTCCACTCTTTCTCCAACAATTTC
ACAACGCTCGCAAGCATTGTACCCAATATGTCCAATAATACATTTCATAA
ACGCTCTAGCAGGTGCATCACATATAAAACAGTTGATGGAAAAGGGGTAA
AATTCATCTCTAAGTAACAAACCATTTTGTAaaatatcggttgcttctaa
aaTAAAGTCATTGAGAAATTCTTCAACAGAGTCAGGCTTTGAATATCCAT
GAAAAATTGCAATAATAAACACATGTTCAGAAAAATTGATCGAGcctaaa
attggccaaaattggGAGGAGGTTGATTTTTCTAAGGGTAAACCATCCAC
ATTAACTGCTAACTCAATCGCAGTAACAGGGTCACTGAGAAAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027765-exon-sc0000644-1491911889:59264..60212 | TCONS_00027765-exon-sc0000644-1491911889:59264..60212 | Clytia hemisphaerica | exon |
| TCONS_00027765-exon-sc0000644-1510915933:59264..60212 | TCONS_00027765-exon-sc0000644-1510915933:59264..60212 | Clytia hemisphaerica | exon |
| TCONS_00027765-exon-sc0000644-1575043694:59264..60212 | TCONS_00027765-exon-sc0000644-1575043694:59264..60212 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000644 | supercontig | sc0000644:59264..60212 . |
Blast
The following BLAST results are available for this feature:
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