TCONS_00027771 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027771
Unique Name	TCONS_00027771
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1272

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000645:12871..21008+

transcript sequence

>TCONS_00027771 ID=TCONS_00027771|Name=TCONS_00027771|organism=Clytia hemisphaerica|type=transcript|length=1272bp
NCAACGCAAGCGAACGAGGGTGGTTTCAACACGACCTCAAGTGAAAGAGC
TCTAGTGAGAGTTTTAGTGACAACGTTACCCAAGAACCTCTTTGAAGTTG
ATACTCAAAAACACGTTGATTCCAAACTACTCGAAGGTGCTTTAGCGACA
ATCCGTCACGCCCGTTGGTTCGAAGAGAGCGCCTCCCACACGACCATTCG
CTTTTTGATTCGATTGTTAAAGGATTTGAAGAAACGCTTCGCTGGTCTTG
CTGGTTTGACACCCTGGTTAATCGACTTATTGgCTTTCAAAAGCGCCACA
GGACCCAACGGCTCAAACTTACCAATTACCGCAGCGTTCAGACGAGCACT
GCAATTATTAGCGGCTGGATGTTTCCTACCTGGTTCAGTTGGTATCCTTG
ACCCTTGTGAGAGCGGACAAGTTCGTGCGCATAGCGTACTCGGTTTAGAA
GAACAAGATCTCTTGTGTATGACGTCACAAACTCTTCTTCGAACCCTCTC
TCACGGAGCGTACAACGAGATCCTTGGTGGTGATGGAGCTGTCTCCACCA
GTCTGGATACTGACATCACATCTTGGGGAGGTACGATTGTGACTCCGGGT
GAACCAGCTTACAATAAAGAAGCCCACAAGAAGGAAAGCGAACTCCTCGA
GAAGATGAACGAAGAAACGAGCGGTGAACAAAAGAAAGCAGGAGAAAACA
AATAGACGAATGAGTAGTTCTCCTCATCTTCAAGATGCTATCGATTCGAT
CAACAGATTTGATGACACTGCAAGATTATATTGTGTTGTTTTGACTTGGC
CGAAAATTCGATTATGAACATTTTATGGCTTGATCAGAAATCATGTACGA
AATACACGAATTGTGAAGTGGTTGAGTGGAAATCTTGCTCAACACAAATA
AACTttcattcatgatattcatacACGTCATTTTTCTACGGCAACACCCC
GGTTTTTCCCAGTAGTGGCAAATCTTGAACAACCTTTCACTAGTTTGCCA
ctactgaaaaaaattacgtcgCGAATATCATTGATATAGAAAAAGGGGGT
AGGGGTAGAGGTAGAAAAGCCTTTgctgtttttcattttgtacattttta
gtAGGTCCTTTCATTTtatcctaattttttttctttggataAAACTTAAg
ccctttttccttttttttatggGTGAGGGAATGAAGAAAAGATGAAAGGA
TTTTTTTAGAGATAGGATGcaaatttttagtgtttttgaaagtttgaaga
aaatatttccaCTTATAATAAT

Run BLAST on NCBI

transcript from alignment at sc0000645:12871..21008+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027771 ID=TCONS_00027771|Name=TCONS_00027771|organism=Clytia hemisphaerica|type=transcript|length=8138bp|location=Sequence derived from alignment at sc0000645:12871..21008+ (Clytia hemisphaerica)
NCAACGCAAGCGAACGAGGGTGGTTTCAACACGACCTCAAGTGAAAGAGC
TCTAGTGAGAGTTTTAGTGACAACGTTACCCAAGAACCTCTTTGAAGTTG
ATACTCAAAAACACGTTGATTCCAAACTACTCGAAGGTACTATGTTTGTT
TAAGATTCAAGTATTGCATGTTTACATTAATTTACAagttgcaatttttt
tcatcaaagggCGGGTGTAATAAATCAGCATTTACGTTTAAAATGGAGCA
TTTCAGCATATGCATTGGGTATAGGTATAAGTTTTTCAAGCGTTTGATTC
CAGATAATTCAAAGTTGGGGTAATTTCAGATCTCATGCATTCTTTCGAGA
ATTTCCTCTTCAATAACCAAGATGGTTATGATAGTCCCTGGAAAATTTga
cgaattttttttatcacttATCGAAATACATCTCTAGAATGTCTAAAAAA
TAtgacattcaaaaattttccaaaattttacaattttaaaattttgatca
tttCTTGACTAAGGGGGAAACTCacaattttagtaatttttcagggaaaa
tgaattctaaattttcgccaaaactCTGTGAAACTAAGTGAAAAGCAttt
aatattatttatttaCAAGATTTTGTCTTGTCTTTCTGAAGGTGCTTTAG
CGACAATCCGTCACGCCCGTTGGTTCGAAGAGAGCGCCTCCCACACGACC
ATTCGCTTTTTGATTCGATTGTTAAAGGATTTGAAGAAACGCTTCGCTGG
TCTTGCTGGTTTGACACCCTGGTTAATCGACTTATTGGTAAGTAAAGCTT
CCAAACTGTAAATTTGATAATTATTTCCTCTCATGGTTATCTTtacaacg
agcacaaaatcacTTGAGTTATCTAACTTAAAGTTTATAGGCTTTTATAT
TACGGGCTATATTGAGACTTCCGATAACAAATCGGTATCAGTTGCTATAT
CAATCAGATGGGCAAAGTTTAATTACAAAGTTCTTCTGTCTGTAACGAAa
tgctgaaaatttgaatatataTAGAAATAGAATCGTCTTTTGTTGTTTGA
AGTCTATTTCAGTCCATTTCCGTCAAAAACTTAGCTTCGACCACTAAATA
ACTACCTGGTGTCCCAGCAAAGGTTCCCCGTCTTTGAAGTGAGTTTTATC
AACTGTTAAAGAATCAATcatattgcattggaaagaggaactGATAAAGT
TAAACTATGAGGGGTCGTTTCTCAAATTCggtcaactagatcaaaagtct
aaatgctaaaacattacttttcaaaaaactcgaaATTAAATGCGAATAAT
GTggttattatattatattatttttataggCTTTCAAAAGCGCCACAGGA
CCCAACGGCTCAAACTTACCAATTACCGCAGCGTTCAGGTGAGATATGCA
GTTTTTATTGAGATAATGGAGTAGTGATTCTTGCTaaatttattttcgaa
tttttgcatttttcacgagaataaattattcaaaattgcTTGAGATTGCT
GACTCGTGAAATTAGATCaaagtgaaaactttttttgggtGTAAAATACT
ATGTAAATTTAGTATTTTTGACCAGAATTGGGGTTTTCAGAGCCATTTAA
ACGGAATCTTGCTGATTCGCTTTGTAATTAATTTCACGCGAAATTTTCCA
AAACACCGATTCGCCGCGAAAATAGAtccagaaaattttgcgattttgtt
CGGCTCACGAATCGAATCTCGTGAAAATCAATCCGATGAACGTAATGTTA
AAAATTTCCCATATTTGCATCTAATTCTGTTAAACAATAAACTTAATGTA
TACCGAGTGCGAGTTTATCGGTCAAATGAacttagtaaagctcaaattgc
agatgtcgAACGATAAACTCGGATTTACATTCACTCACCGTCTTGATAAG
GCTATCACTGTATCTCACTGACATTTtgccgattggtagtgtgaaggttt
cgatcacaaactttcaccgcaatggactgtgttcgaatcccaagctcTTC
CAGGTAAGGTgctagggaaatatggtgatagactctctaccttcactcac
aTGTCAATAAACTTAATGATCCTTTGTACAATTCATCACCGTGCTCCTTT
AGTATAAACTATACTTTCTCCCCATTATCAGGCTTTCAACCAGTTCTATC
ATAATAGCAATATTAGTAATGATTTCATGGTCCTGATTTCAGTTGAGGGT
CTTCCAGATAAAAAAGTTTACATAGAGGTAGAAGGGCTTAATTTTTTCTC
AGTGAACCTCACTCATTATACGATTTTTGTCCCCCCTGGGGGCAACAAGA
GGGGTCAATTTGATTTGATCCCTGAACACTTCCTGAACAATCCATAAAAG
AGCATATGTATTCACAACCCGAATATTAATTTCGACAATTTTGTTACACC
CCGCTAGGCATTATATCTTTCACGCTGGGGTGATTTTCCAGCAATTTTCA
ATGGTACAAATACTTTAAGCTAATAAGTTACAAAAGTCAAACCCACTTAA
AACTTGGAACTGTTTTTTACTATCGTATACTTTTCCAATGTTTTCAGACG
AGCACTGCAATTATTAGCGGCTGGATGTTTCCTACCTGGTTCAGTTGGTA
TCCTTGACCCTTGTGAGAGCGGACAAGTTCGTGCGCATAGCGTACTCGGT
TTAGAAGAACAAGATCTCTTGTGTATGACGTCACAAACTCTTCTTCGAAC
CCTCTCTCACGGTGAGTTTTTACATTTCTTCTTGTTTTTAggactttgtt
ttgtttttagtattcatgatatgcaccattgcaatgtcttccgcgGACca
cacagctgattggttgcaagtgacgtattgactgatttaacgtcacttac
aaccaattagatattgggtccgtgatgtaatgtcagaagacattgattgc
aatggtgcatatcacgaaTTCCTTCATTTCTTCGTATGATTTTTAAAAAC
GCAAATTCATAGACCtcttcataaattacgtcacgagcaacgcttacTCT
GTtctcaaaatattgctatggttaTTGATTCCCAGTAGAGGAGCTCATGA
AAAGTTTACTCTATTTATAAGACTCTACTTAAAGACTGGAGGGATCTGAT
CACCTTGGTAATGTTTTCAAGACGAGGCGGTCGTCGCGCTCTAAATAATT
TATCAAGAGTCCTATGATAAGGTAGAGAGATAAGACTCACTCACTATCGA
ACCTCAAAAGCGCGGTATGGTTTTGAGGGGACTGGTAATGAATTAACAAG
GACGTCAAAGTTCTTTGTCTGAAAGGAtatcaatgcaacgacttcggGCA
GGTCATTCATTTCTAAACTCAAGCCCAGTTTTctctagcctgttagacga
aaaccgcttttttatcgcgacaatttggtttgtgggaaggtactggctaa
gTTTTCTCACGCTTTAAAGGTTGATAGGACTGTAGACACCTATTGTCGCG
GTCAGCTTTTAAGGAGAacgaaaaacaaggaaaattctTCTCGACAACGG
TATAGAAAACACAAGTGAAAGGAGGGCTCTTGTGAAAAATGTAAGATACC
CTTGCATTGGAGCGATAAAGTAACGtcactattcatgatatgcaccactg
caatgtcttctgacattacgtcggGAACCAAtaaatagctcattggttgg
aagtgacgtaaaagcagtcaatacgtcactttcaaccaatcagctattgg
gtggaacggaagacattgcaatggcgcatatcatgaatagaccaCCTTAG
AGACTCGTGAAAATGTCTCTCAGGTTTTGGAGAGaatttttgtggtttga
ttttttGACTTAGTTGTAGCCTAAAAGTGCCGTGCGGCGAGAACAAATCT
ACCAGTCCCCTAGAAAGTTGACAGCGCTGCTAAGGGTTGATAGGAATGTA
CAGTCCGTGAGGAGACTGGGTTTCACTTTAAtgacaaaaatcaatttttc
aacgTCTTTCTCGAAAGGAAATCTGcacatactttaggcgtactAAAGGC
GTACTTAAACGtaaaggccaaaattcgcgaaaatcgcgaaagtttctgct
ctcgaaagtttgtacgcctaaagtatttgtGTATTTTCCCCTTGAATAga
atagaaaatagcatgtaacagatgcacgaatcctatgaaataggctaatt
tcAATAATCGTGTCTTGACTTTCTGTTGCATTACACAATTCTTTCAGGAG
CGTACAACGAGATCCTTGGTGGTGATGGAGCTGTCTCCACCAGTCTGGAT
ACTGACATCACATCTTGGGGAGGTGAGTAAAAGTCATCATGAGCTCCTTA
CAGCAAGGTTCCTGGAAGAgtttaaaggccggtctccatttGCGCGCGCT
GCAATCACACTTTTGTTGGctccaatcctttttgcttggaaaaaagatta
cgtcatagaaatgtagcgcgcgctcgaataaaaagttgaacacatttcaa
cttttttcaaccgttacgtcagatagcgccaatggagttgcttcatttct
CTTTTAACCAATAGCGTGAATACTTTGCTCGAAAAAATGTGATtaaagcg
cgcgcaagtggagaccggccctAAGTGttgttattcatgatatgcaccac
tgcaatgacttcacgaagtTATGCAACTTTTCCGTCTTTTTCCccaccca
atacgtcattttttctattgtttaagtgacgtattgggtggaaaacttta
aaagtttcttcagaagactctccagtggtgcatatcatgaatagttgTTT
GCCATCGGGTTTTGattagtttttaaattttattgcactgttttggtttt
tatgagaattttcaataccttttcttttttcaatgaacctgcttttctag
agaaaaaaaattttcgcttAAGAAATTTGAAGTTGTTAAGGGGGCTTGTT
TTTGGATTGAATCGAAAATGTGGTTACACTTGGAAACCTTACTACTATAA
AATAGAACTTTAATTGGGTTAATTTTCGGGTTTCGGGTAAAATTCAATTT
CGCGTTTCTGCGAATTTTTGCAATCttcgcaaaaaaaaatgaatcccTTA
TAATCGTGTGAGAtcgtaggctgctggcatccactaacggattcgtgctc
cttatagaggatgcttaataagcgatatttcctttgtccagagatttgcc
gcctttagccgatatacggctaaagacatttttagctggcgagtgtctac
aaatataacattacgtaatgttaaaattctctgtgaggcaccaaatcata
gattggaaaatatatttggattttgaaaaaaaagtaggcggaaggaagtt
tgcttgtttttcttcctcctttcttgttggataatgtggagattttgtaa
aagatgagaaattagatttattgaatttaagtgccctgatgtatcttctg
tgtgcactaacaaaattttgcttcataaaactaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattatttc
aaggtattctagttatgtatatacagtacattttgggggtcatattgaat
atttctgacattacttctttatgattctacaaaagggagtgtggttgttc
cttcaacaaggaCCTATAAATTgcaaatgttaaaacaaacaaagaacttt
tcttcagctttggcatttcactttttagtactgtgtggcctttgtatctt
ttcaggtatttagcttcaattctttgaagagattgaagtgtttctggttg
ttttctttcacttttNtctttcacttttgtgttcatatttgtattttttg
agcttcgaccgaagagctgatggaaaagttttgataaatttacagaccag
atatcttataaaagcaaaggTCAAAattaaatctacagactgtatataat
gcgcgcatcagattgttttttatcttttttctgttttgtttttctggtct
gggattcgaatttcaaatgtaaacattccattgaaaacgttcgaagcGAT
TGTTTTTGCGCGCACATCAATGTCAATCAAATTACTCgccaagatttcct
ttgcgaaccggaaagcggttggtagatcattaagcagacctatactacct
gtggttttgtagaggtctgcgattcagactagtgagATCGATGATCGGTT
CCCGGGAGctttaaaaatagattttcgacATGAAACACATTtgatttttc
gcgaaaatcgcgaaaacaAATCTAGAaagttttacgatttttttgacTCG
CTGAGTTAGATCTCGTGAAAATTAATCCGGTTAAGGTTAATCAAGCCACA
CTCCgggcagtgccgtaggaagcattttgataTGGGGGGCATAAGTTCAG
TCACAAACTTTGAAATCTAGAACTCTAACACCCTccaaaaactaaaataa
ttcgaataaaGACGAAATTTAAAGGTAAAATACTTGCACCCCTTAGCCCC
ACCCCCTGGGTAGCTACGACGCTCCGGAGGATACGTATATAATTGGAGAA
CTTTGTCTCCACAGGTACGATTGTGACTCCGGGTGAACCAGCTTACAATA
AAGAAGCCCACAAGAAGGAAAGCGAACTCCTCGAGAAGATGAACGAAGAA
ACGAGCGGTGAACAAAAGAAAGCAGGAGAAAACAAATAGACGAATGAGTA
GTTCTCCTCATCTTCAAGGTAAACTTCTTCTCCTTCACGCTATATATACG
tgttttcataagaacatccaaaaattttgaagccctcggatgttcgtaac
tttttgagttttaagcctaaaaatgtttttaacatgttcttattttcacc
attttttgagtatttttttctccattttcctaagaaatcgggtgttttag
agtctgcaaagccttgaaaatgttcttgacttgtttttaacatattggcc
atcaaagctatacgttcttatatagtttgttcttataaaaaaaacgtgta
caatgtTATGACATCGTTTAAACGCATCTACCACCGTTTTCTCACATACT
ATActagttttttacaaaaaaagttaCCATTTTTATCTTCACAATTTTCA
CATTATcgcattttcagaaattgattAATAAAAAAGCCGAGaaaaaagct
aaagaaaaaaatcgagattttctcattaggtTTTTCTGCGATTTCGAATT
ACAATTGacttctataattcgattttcaaggagaaTTGGATTTCTATCGA
ATTAGGGAGCGTAGCATAcggtagagcgtcgtttatgagagttctTGTTG
ATGGAGACTtgcaatattatcgaataatggagcgtatcgaatagtagaac
gtcgaattagagagcgtcgactGTAAATGTTTTCTGTTGATTAGCCCGGG
AGGTCCATATAAGTATCACGCGTTTTAAAAATCTTATATTTTCATCATAG
ATGCTATCGATTCGATCAACAGATTTGATGACACTGCAAGATTATATTGT
GTTGTTTTGACTTGGCCGAAAATTCGATTATGAACATTTTATGGCTTGAT
CAGAAATCATGTACGAAATACACGAATTGTGAAGTGGTTGAGTGGAAATC
TTGCTCAACACAAATAAACTttcattcatgatattcatacACGTCATTTT
TCTACGGCAACACCCCGGTTTTTCCCAGTAGTGGCAAATCTTGAACAACC
TTTCACTAGTTTGCCActactgaaaaaaattacgtcgCGAATATCATTGA
TATAGAAAAAGGGGGTAGGGGTAGAGGTAGAAAAGCCTTTgctgtttttc
attttgtacatttttagtAGGTCCTTTCATTTtatcctaattttttttct
ttggataAAACTTAAgccctttttccttttttttatggGTGAGGGAATGA
AGAAAAGATGAAAGGATTTTTTTAGAGATAGGATGcaaatttttagtgtt
tttgaaagtttgaagaaaatatttccaCTTATAATAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015686	XLOC_015686	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000645	supercontig	sc0000645:12871..21008 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.46312	6.67032	36.3066	40.0079	32.7988	16.5024	23.6579	20.0117	17.7783	19.9201	10.2878	13.1096	8.08308	7.95209	15.6753	18.0202	25.8996	25.7192	6.14458	4.21633	10.907	13.3239	11.9098	12.3724	1.39396	5.27001	11.7002	6.95427	10.4908	8.047

Blast

[Close]

BLAST of TCONS_00027771 vs. Swiss-Prot (Human)
Match: ILF2 (Interleukin enhancer-binding factor 2 OS=Homo sapiens GN=ILF2 PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.879e-63
Identity = 110/201 (54.73%), Postives = 147/201 (73.13%), Query Frame = 1

Query:   13 NEGGFNTTSSERALVRVLVTTLPKNLFEVDTQKHVDSKLLEGALATIRHARWFEESASHTTIRFLIRLLKDLKKRFAGLAGLTPWLIDLLA-FKSATGPNGSNLPITXXXXXXXXXXXXGCFLPGSVGILDPCESGQVRAHSVLGLEEQDLLCMTSQTLLRTLSHGAYNEILGGDGAVSTSLDTDITSWGGTIVTPGEPAY 612
            NE GF  +SS+ A V++L+TT+P NL ++D + H+D K+L+ ALA IRHARWFEE+AS +T++ LIRLLKDL+ RF G   LTPW++DLL  +     P    L +  A+RR LQ+LAAG FLPGSVGI DPCESG  R H+V+ LE+QD++C T+QTL+R LSHG + +ILG +G  S  L ++I++W G IVTP E AY
Sbjct:  160 NETGFEISSSD-ATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDAS-YLASEISTWDGVIVTPSEKAY 358

The following BLAST results are available for this feature:

BLAST of TCONS_00027771 vs. Swiss-Prot (Human)

BLAST of TCONS_00027771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ILF2	4.879e-63	54.73	Interleukin enhancer-binding factor 2 OS=Homo sapi...	[more]

You are here

TCONS_00027771 (transcript) - C. hemisphaerica