|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027772 ID=TCONS_00027772|Name=TCONS_00027772|organism=Clytia hemisphaerica|type=transcript|length=645bp
CGACAATCTACCGAACATCGGGAGTGGCCCAATATGAAATTCTTAGAGAT
ATTCTGAACAAAATTTTGCGTTTTATATAGGGCACATAAACAAATTCGTA
ATTTGCCGAAGAAAACTTGTGCGTACCCTCTCGAGTGAAGGTGTGGAATT
TGCAGAGCACGCCATTGGCATAACCTCGCTTCAATAAAATTACCTAAAgc
ccaaaaaaattaattatacaTAATACAAAATGACTGAAGCAGAGACTCTT
ATTCACAGAGCTAAGCTCGCTGAGCAAGCAGAAAGGTACGATGACATGGC
AAATGCAATGAAGAAAGTTACTGAAGTTAAAGATATGCTTAACACAGAAG
AAAGGAATCTGTTGTCCGTTGCATACAAAAATATTGTCGGTGCAAAACGT
TCCTCATGGAGGGTTATCACAAGTATCGACCAAAAAAATACTGAAAAGAA
ACCACACACCACCGAATACATCGACCGAATCGTCAACGAATTGAAAGATG
TCTGTAAAGATGTGTTGGATCTGTTAGATAACTACCTGGTGAAGAAAGCT
TTGGCAAAATTGTTGACAGAAGAGGCTACTGAACAAGATGGAGAGTCAGC
AGTCTTTTATCTCAAAATGAAAGGAGATTACTACAGGTCAGTAAG Run BLAST on NCBI transcript from alignment at sc0000645:25191..32755+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027772 ID=TCONS_00027772|Name=TCONS_00027772|organism=Clytia hemisphaerica|type=transcript|length=7565bp|location=Sequence derived from alignment at sc0000645:25191..32755+ (Clytia hemisphaerica)
CGACAATCTACCGAACATCGGGAGTGGCCCAATATGAAATTCTTAGAGAT
ATTCTGAACAAAATTTTGCGTTTTATATAGGGCACATAAACAAATTCGTA
ATTTGCCGAAGAAAACTTGTGCGTACCCTCTCGAGTGAAGGTGTGGAATT
TGCAGAGCACGCCATTGGCATAACCTCGCTTCAATAAAATTACCTAAAgc
ccaaaaaaattaattatacaTAATACAAAATGACTGAAGCAGAGACTCTT
ATTCACAGAGCTAAGCTCGCTGAGCAAGCAGAAAGGTAATTTTCATGTTA
AAGTTGAAATTTGAGTACCTCATGGTTTTGGCTATGAAGGTGGCCACATA
GTAAATTTTGTGATattcaaaagttgaatttttgatAGTTTAATCCATCA
ATGGCTTGACTAGGATTACAGTTTGCCTGTTAGAAAATTCCAGATGGTAT
AGCAGTTATTTGTTAAAGAAAGTATTTAATAAATTATACTGTCAAAAAGC
TATAAATGATTATAAAATTACACTTTCTAATAAGCTTAGAGACTAGACAA
ATGATGTTTACATGTGTGTAGTTTTGAGACAATTATAATGTTCGACTTCA
TTGGTGATTTTTCAATGTTATGGTTGCTTTTTGGATTTAAATGTTCATGA
AGTTAGAGATTTACATAATGACCCTGCCATAAAGCACCGGACTTGCTACA
AGACACCAAGTGCCTTAACACACTAAAGAAAAAAGCTCTTTGTCAAGAAT
TTAGTAATGTTATTAGATAAGAGCGAGCTGGTACGTACTGCGCAAGAGCG
AATAAAGCGAGCGAATACCATATATCCTGATCAAagccagacggtactaa
tcgaacgTTCAACTGTGattgaagtaatcaataatgatcgataaCAGTCG
AAGGTGATCAGTGACCACTTATTGATTCTATCGGTGATTGAATACTTACT
CAACTCCAAATTATGGCATTTTTATCAACCATTTTCAATTCGTTCGATCG
TTTCGATTACTGTTAGATTACTTTCAATCActttcgatcatattgaatac
cttccATTTTGTCAAATATGTTTCCAGAAGAAGCAGCgcgtcaaaataat
ctgaaaccaagttTATTTCGGCCAATTAAAACACGCGATTCACGCGCGaa
aaccacttttgttttctccgaccaatcagaatgcgCAATATGAGTCACTT
GAGTGAAACCCAGGGACGAAGGCACACAAAATGGTGGGCGAAATGGGTGG
GAAATAAGGAGGTCAATCTTTATGGTGGGTCTTCTTTTTGTCAGTAGTTT
TTTAAAAGTACGATATAATACCATGAAACATAGAATGCCCCCCCCTgagc
tgggggggggggggctaaaccattttttcttgattgggggctgcattttt
caaaatatactgGGGGCTATGCAAAATgtctttgatattttgctttgtgg
aggtgggggctatgtttctagaaATTAGCTGGGGGCTAttccttagcccc
ccccccctgaaaaatgctgggggctggacccctctgcacactatgtagaa
agtttatgctcgtgaaACGTGAGAAATATTCATTCCTCAAATTCGCAAAG
TTAAATGCTGTAAATTTCATGACTTTTTTTACCTCTTTAAAGTTTGTTCG
CTTAAAGTAGAAACTGGAAACTGGTTGTTTTAAATAAAGCTTACTGATTG
AAATTTGTTTGCTACATTATTTGttcttttggttgtttttttttacgttt
ttattttgttgatcaTTTCCAAGAACATTTTACATTTCTTTGAACAAGCT
GATCATAACATTCGGAGAGAAAAAACGTTAATTAATACAAAACTGCGAAA
AAAGCTTAATTTCCATTTTTGTATCCTGTTTGGACTTTCTGTTTATTTAA
AAGTATCCTTTTATGATTCTGTCCTATGTTCAACAGGCAACTGTGACCCA
TGTTCAAAACCCATTTCAAATAATGAtttataaattaatttttcaaaata
gatcctatcaaagttttttatgtttctaaaaaagcgatgcattgtgggat
tgtttgggagtattacaatagaattcccttgaGGAATTCGCAAGAGATtg
ctattgtaatactcccgaaacaatcccacaatgcatcgcttttttagaaa
aatcaaaaactccgattaaGTTCTATTAGGTAAAAGCAGCATATTAATTG
CTTCAGAGGCCCTGgtgttgaaatgaaaaataccAAAGCATGTCGTTAAG
TTGTCCAGGCCAAATCTGTAACAGAACATCATATTGTAAGATGAAATCGT
AATTCTTattacagtaaaacctctaattaacggacactctaaaaggcaga
CACCTCttattagcggacaatttcatttccCCCgaccgtttcctagtcaa
atcctcataaaaaagtttctaaaaggcggacactcaattagcggaccctc
tgattagcggacaatttcatttccCCCgaccgtttcctagtcaaatcctc
ataaaaaagtttctaaaaggcggacactcaattagcggaccctctgatta
gcggacaaattttttcgcacgaaatggccaaaacccctattttagctctc
caattagcagacattgaatatcaaacgggtcacagacgtccaaaatctaa
aaaaaaatttttagatatttttatttcaagcattattagtcttattattc
aaattatttctacaaatttccagttttcccttgacccattcaacgaattt
aggtgggccaaagaaatcataaatcactgattttcttttatttgttaaaa
atctaaattgttgcgttttaataacctttctcttgttcttttatggccta
gtgtctgcagacNTACCCACCACCTCAATTTAACGTCTTGCCAGTCACTC
ttgttcttctatggcctagtgtctgcagacaagtactttagaccccaatt
ttgtattttcgacaccctgggatggcctaatttcaaaattggagctccga
gatcaaaagtttctaaaaggcgtacaattctaattagcggacactaaccc
ctttccccgatggtgtccgctaattagaggttccactgtattcactattt
gttttttcattcactcttgacaaaatacaaaataagtCATGCGGACCATT
AATTTTGGCTCTTTTCATGAAACTACAAAGTCTATCAATTTTATGTTAAT
GCATTCaattaaattttaataaaccagctgcgctggaaggtcagcccaat
aagcttaaaacgattagaaggaagtacaatcaagaaacctaattcGAAGT
TAAAGCCAAAGAGGTTGAAAAGCTCAATTTGGTTTAACTtcagacaaaaa
aaagtttaacacaaaGTTGAATTTGCCCAAAGCAGACAGATGTGATAGAT
TATTTCATCCTTGGAATTTCACATAAATCTTTTCGCTAGAATGTCTTAAA
CCTGTTCTTTATTCTCTGAGAAAGTATCCAAGGCGGCCGCTGGACGGGGG
CGTGCCGCTGGAGTTggaaagtggaccctgtcagatatgaatttttggca
aagttaggaccctgtcagaacaaaaaattaaaaaattgaaaattttcccg
ttttcaccctgaaaataaaagtagacgaaaatttGAACGATTTTCTGTTT
tgcaccctgaaaattgtccaaaataataagaaatcgaccctgtcagatac
acatcttgaaaattagtaaatttgggaacctgtcagatatcttcagagcc
taaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGtctagtacacgctttttttataagaatggtg
taaatccatttcatcatggatattcttaacttttttgggaaaatcatcct
aaaatattgttacagcattcttaggatAGGACTAGACTTAATAACATTTC
GAACATACGTCGCCTTAATTGGGGGtatgacaatttataattgaaaatgc
tcaaaaaactgtgaaaatgccattcttagcttgagtagcaaactTCCATG
AGGGTGATAATCTTAgcaatattcttaaatttttggccattttcatcatg
gacattcttataaagaaattgaacctagtataatgtgaatgaataggggc
attttatattgaggaagctgcttgggaaattccgtccagtttcgataact
caatcaaaagttatgacgattcTAAGTTTATGTTACGCCACACTTTGACG
TTCCTTTCTTTCACACAAAAACTCTCCAGACAAGAAGCctcaaaaccaat
cataaaaactttcttttacactctctatttatttacaatgcaatggcctc
tttcaatttattgaataaacaaaaaaaaatcgtttttcactttcttcttt
taattatagtgttcttttattattatgcgcaaatcttttatttaatgaag
ttatgtgtttcttttctcttccaagGAAAAATATGTTTCGCGCCAAAGTT
TTCCTGATTAAATCGGAATTATACCAATAAATGGGAATAAAAAGCAACAC
TGGAGACGCTGgaaaaaagagatttgaaggtttaccggggctgaccaata
acccaggcaaaattccaagcactttggtCACTGGCCGTTTTTTTacttag
aaattgagttttgacTTTCAGAGTGCACATTGTAGGTGGTCAATACGCAC
TGCAGGTGCCACAATTTTTTAAACTCCTCTACACCACTTATAAAGGGTTT
ATTTTCAAGGATCAAGCACTGTATTtgcgaaaataaaaataaatgtattg
aATTTAGTTCATTTCTTCAATCATCATAGAGAGagacattttgattttgc
ttACTGTCTTCatctttttgacaaaataaaaattctccAAATATTGAGTA
TTAaaactcaattcaaaattgagtattttggtTGTATAACGGCCAcaaaa
aagtgcttggaattttcgcTGTAACcaaatcagaaaaatcagaatTGAAG
ATATTGAATCTAGAACTGCAGAAAGATTGCTTTAGATTGTTCAAGTGTAG
AAAAAGTTGAGATggagaaaattgtaaaaaagttgaTGAAGGTAAAGAAA
ACGTtccatttgttttcctttttttagaaGATTTGTTTATGAATTCAACT
TATGTTTCCTTTTTAAACAACCAAAAAACTGTAGTTAGGCCTGGAAAAGC
ATTTTTTTGGTCTCAACACgaaatgaaatttatcaaaaataactaTTTAT
AATTTCCTTTCTTCAGGTACGATGACATGGCAAATGCAATGAAGAAAGTT
ACTGAAGTTAAAGATATGCTTAACACAGAAGAAAGGAATCTGTTGTCCGT
TGCATACAAAAATATTGTCGGTGCAAAACGTTCCTCATGGAGGGTTATCA
CAAGTATCGACCAAAAAAATACTGAAAAGAAACCAGTAAGAACAGACCAT
TTTTGGACCTTCCTTATCAGATGTCCTTTGAAATAACCCTGCCCGTCTGT
CTGTTTGAAATACCCCGCCTGTCTGTCTGTTACCagtttttctcaggatt
ggcatGATGCAAGtccaatttttagaaaatcttttgggcaaatttgggtg
aaaaacTGCCTATAATagggtttttttttggacttaaaAGTGGGTAGAAC
CAtcttttctgggaaattttgtttggtcataaaaagctgatttttgggaa
tttgtttttctttcccgAACATACAACATTATTCTTATCCATGTAATATC
AAGAAGTTCAACAACATATGTCGAACCTGACAAGTTGAATAAGGAAAGTT
GCCGTTTGAGGTTACAGACCTGGCCGCGTGCTATCGCACTCGCACATGCT
GACACACACCTAAAAAGGTTTGCGAGTGCTTATAGCActcctaaaatata
caagaatgTACAAAATCTCTTTTGCAAGGGCTAATAGAGCACGTCATAAT
ctataaaaaattttattgggtGCTATTTTGGCACGCACAAAGTATTGTTC
ATGGCCAGGCCTGAGGTTGGTGTGCCTATTTAGATTGTTAGATTGTCAAG
CATGTACTCCGGAACACTGAGTACTATAAActgatttttgataattttga
aaaacccTTTCTCATTTATTTAGTACACAATGTTCTAATTGATTTTGATA
ACCCAAAATCACATTTTTGGCCAATTCATTTTGGAAATTTCGCCTTTCGA
GAaacttttcaacattttttatgCTGAAATTAAgtagaaattttaaaaca
tttgtagaaaaaaatataacattttgcaagcttttttgattttaaatttg
ataattttgaaaatggatCACCACTTTACCAAGTGACATGGGTGCCATAA
ACTAACTGGCTGACCCCCCTGTTTCAAATGCTCTTCATATTCTCACAATG
AcattctgtttttgttttgtagCACACCACCGAATACATCGACCGAATCG
TCAACGAATTGAAAGATGTCTGTAAAGATGTGTTGGATCTGTTAGATAAC
TACCTGGTGAAGAAAGCTTTGGCAAAATTGTTGACAGAAGAGGCTACTGA
ACAAGATGGAGAGTCAGCAGTCTTTTATCTCAAAATGAAAGGAGATTACT
ACAGGTCAGTAAGCCCACTTATACATATTAAGGGCTGGGTACTAGGTTTG
CCAGATGACGTGTATGTCagagcatggaggtataaagaaaaacagaagtt
gaatgtgtcggtaattggtcgttaaagtctttcgattttttttataaaat
gtatcaaaaaaaattctaagttcgcccgatgaaataagactttttagtag
aactcaagtttgctctgNTGGGTGCTATTTTGGCACGCACAAAGTATTGT
TCATGGCCAGGCCTGAGGTTGGTGTGCCTATTTAGATTGTTAGATTGTCA
AGCATGTACTCCGGAACACTGAGTACTATAAActgatttttgataatttt
gaaaaacccTTTCTCATTTATTTAGTACACAATGTTCTAATTGATTTTGA
TAACCCAAAATCACATTTTTGGCCAATTCATTTTGGAAATTTCGCCTTTC
GAGAaacttttcaacattttttatgCTGAAATTAAgtagaaattttaaaa
catttgtagaaaaaaatataacattttgcaagcttttttgattttaaatt
tgataattttgaaaatggatCACCACTTTACCAAGTGACATGGGTGCCAT
AAACTAACTGGCTGACCCCCCTGTTTCAAATGCTCTTCATATTCTCACAA
TGAcattctgtttttgttttgtagCACACCACCGAATACATCGACCGAAT
CGTCAACGAATTGAAAGATGTCTGTAAAGATGTGTTGGATCTGTTAGATA
ACTACCTGGTGAAGAAAGCTTTGGCAAAATTGTTGACAGAAGAGGCTACT
GAACAAGATGGAGAGTCAGCAGTCTTTTATCTCAAAATGAAAGGAGATTA
CTACAGGTCAGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027772-exon-sc0000645-1491911889:25191..25475 | TCONS_00027772-exon-sc0000645-1491911889:25191..25475 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1510915933:25191..25475 | TCONS_00027772-exon-sc0000645-1510915933:25191..25475 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1575043694:25191..25475 | TCONS_00027772-exon-sc0000645-1575043694:25191..25475 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1491911889:30557..30725 | TCONS_00027772-exon-sc0000645-1491911889:30557..30725 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1510915933:30557..30725 | TCONS_00027772-exon-sc0000645-1510915933:30557..30725 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1575043694:30557..30725 | TCONS_00027772-exon-sc0000645-1575043694:30557..30725 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1491911889:32565..32755 | TCONS_00027772-exon-sc0000645-1491911889:32565..32755 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1510915933:32565..32755 | TCONS_00027772-exon-sc0000645-1510915933:32565..32755 | Clytia hemisphaerica | exon |
| TCONS_00027772-exon-sc0000645-1575043694:32565..32755 | TCONS_00027772-exon-sc0000645-1575043694:32565..32755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000645 | supercontig | sc0000645:25191..32755 + |
Blast
BLAST of TCONS_00027772 vs. Swiss-Prot (Human)
Match: 1433G (14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 4.058e-36 Identity = 82/141 (58.16%), Postives = 100/141 (70.92%), Query Frame = 2
Query: 230 MTEAETLIHRAKLAEQAERYDDMANAMKKVTEVKDMLNTEERNLLSVAYKNIVGAKRSSWRVITSIDQK-----NTEKKPHTTEYIDRIVNEXXXXXXXXXXXXXNYLVKKALAKLLTEEATEQDGESAVFYLKMKGDYYR 637
M + E L+ +A+LAEQAERYDDMA AMK VTE+ + L+ EERNLLSVAYKN+VGA+RSSWRVI+SI+QK N +K Y ++I EL+ VC+DVL LLDNYL+K +E ES VFYLKMKGDYYR
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKN---------CSETQYESKVFYLKMKGDYYR 132
The following BLAST results are available for this feature:
|
