|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027774 ID=TCONS_00027774|Name=TCONS_00027774|organism=Clytia hemisphaerica|type=transcript|length=1162bp
GGCAATGTTCAAAACTTAgttagacatttttgtaaagagATACATTTAAC
AAGAAACTTGAATATAATATTATGAAAACTCACTTGAAAACCGGTAGCAT
CAATGATGCCGATAGttatatattttataatgaCAACCCCTaatctataa
aaaaaaaagatagattctagaaatattataatcCAACATCCACCCATCAT
CAAAAATCAACTCGACCTTGAGGCCAGACAAAGCAATActtaagtttaat
tttttagatAGACTTTTGAAGGTAGCTAAAAGATAGCAAATATGGATTAT
TCCACATCCACTAGGTTGAGTTGAAATTTATTTCAGATGATAGACAAAAT
TTCGAAACTAGACTACTTTCTCAATCAAAACCATAATAATTTTTTGAAGT
GTAAAAGACAGAAAGATAATGTTGACTAAACAcatcaaaattttggtaaa
aacagatTTAAATTTTGAATCAGTTAGCCTCAAGCAACAATTTTATCTTA
GTGTCGGATGGACACACTATAATTATTTTGAGTAGAATATGTGGTATTGT
ATTAAtctatatttttaaaatgaatttcacatttgtttttagtttttcac
ATTCGAGCTTGAGCTCGAGATAAATGAAAATCCTTCCGACACtaagataa
aaattgaaattttgtgaaaatggtTGTTTGAGGCTAACTGATTAAAAAAT
AGAATCTTGATGTGTTTAGTCAACATTATCCTTCAAGCGTTACTCAAGAT
AAATCAAAAACCCATTTATCCCCATAGTGTTGCTAAAACGGCCGAAAGAT
TTGTCCACCTTAATTTTTTAACAGACCCTGTTGTTATACCCAAAAtaaat
aagaacattctaaaaacatcgtgaaagttttttcatattctaaaacatcc
aattttttttagaaaattagacTAAAAATAGGAGCCTCTTACGAACATTT
TTAGGGATAAAGCCCATGTCCGAAGGTTTCAAAATCTTCAGACGTTGTTA
CAAGataaatttaactgaaataacGAAAAAAACAATATGattatatataa
gaacATACGATATCTAAGCTACAaattaaagaatattttaagaacattca
agtTTTTTCAGAGTTTGAAACatacaatttcttagaaaattagaCTAAAA
TATGATTGTACT Run BLAST on NCBI transcript from alignment at sc0000645:49912..59900+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027774 ID=TCONS_00027774|Name=TCONS_00027774|organism=Clytia hemisphaerica|type=transcript|length=9989bp|location=Sequence derived from alignment at sc0000645:49912..59900+ (Clytia hemisphaerica)
GGCAATGTTCAAAACTTAgttagacatttttgtaaagagATACATTTAAC
AAGAAACTTGAATATAATATTATGAAAACTCACTTGAAAACCGGTAGCAT
CAATGATGCCGATAGttatatattttataatgaCAACCCCTaatctataa
aaaaaaaagatagattctagaaatattataatcCAACATCCACCCATCAT
CAAAAATCAACTCGACCTTGAGGCCAGACAAAGCAATActtaagtttaat
tttttagatAGACTTTTGAAGGTAGCTAAAAGATAGCAAATATGGATTAT
TCCACATCCACTAGGTTGAGTTGAAATTTATTTCAGATGATAGACAAAAT
TTCGAAACTAGACTACTTTCTCAATCAAAACCATAATAATTTTTTGAAGT
GTAAAAGACAGAAAGATAATGTTGACTAAACAcatcaaaattttggtaaa
aacagatTTAAATTTTGAATCAGTTAGCCTCAAGCAACAATTTTATCTTA
GTGTCGGATGGACACACTATAATTATTTTGAGTAGAATATGTGGTATTGT
ATTAAtctatatttttaaaatgaatttcacatttgtttttagtttttcac
ATTCGAGCTTGAGCTCGAGATAAATGAAAATCCTTCCGACACtaagataa
aaattgaaattttgtgaaaatggtTGTTTGAGGCTAACTGATTAAAAAAT
AGAATCTTGATGTGTTTAGTCAACATTATCCTTCAAGCGTTACTCAAGAT
AAATCAAAAACCCATTTATCCCCATAGTGTTGCTAAAACGGCCGAAAGAT
TTGTCCACCTTAATTTTTTAACAGACCCTGTTGTTATACCCAAAAtaaat
aagaacattctaaaaacatcgtgaaagttttttcatattctaaaacatcc
aattttttttagaaaattagacTAAAAATAGGAGCCTCTTACGAACATTT
TTAGGGATAAAGCCCATGTCCGAAGGTTTCAAAATCTTCAGACGTTGTTA
CAAGataaatttaactgaaataacGAAAAAAACAATATGattatatataa
gaacatacgaTATCTAAGCAacaaatttaagaatattttaagaacattca
agttttttcagagtttgaaacatgcaatttcttagaaaattagaCTAAAA
TATGATTGTATTGATTCTCATCTGATCGTTTGAAACTctttatcaatgtt
ttcatTGCTTCTTGTCCACGGTTTTGAGGTTgttctgaaaaaagaaagta
atTTGGTTTGTCCTTTCATTCGCATATTGATCAACAGCTCTGACTTCTGT
GGAGCCACTGATGGTTTGGTCAAATCATGGACTATTTCATTTCCAAGCCA
AAATTCACTGGTCAGCTTACCATAACCATATTTGTAGTCCAGCCAGTTCT
GTTTGAATTCTGTGGATCCATCTTGTCTCCTTAAGAATATTGTCCAGCCA
CCATTTTGAGTGGTTTGATCGCAGTAGACGTTTTCTTTCTGTGTTACTTT
GTAGATTCCATTCTTGGTGTAGCCGTTCTGCAAAAACTCCAGACAATCTT
TCATCGGTTTGATGGCTGTGCAATCACAGCTTTTGCTATTAGGGATCGAT
CTACATGGCAAACAATCGCCATACATCTTTTTGACCAGAGAAAGTAACTT
CATCTTTAGTTTGATTTTCTGGAGATTGGAAATTGATCGGTCAACCAAGA
CATCTACTGTTTCATTGCCAGTGGCTGATGTATACGCAAACCATTGTATg
cagataaaaatgaagatttgttTTTCTGTTAACGCCATTTTACTGTCCTT
CGCCAGCTTTGAAccagtgtttggtgttttgttaaaatttagtGGTCTTT
TTATACATGTAGGTTCATGAATTTCTTGGCTTATCGAGTTTTTAGACCAG
CTCCTGAGTGCGGGGTAGCACCACCTAGAGGGGTCCTAAGTTACAATACG
ATTTTCGTGTTGGTTAACATCTCTAGTTTATGGAATGGAAAGGTAAATAG
CGTTTTAAGGGGGCTTTTGGTCTCCAGAGGGTCTGAAGTAGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTATGTCTCATCGTTTTTCCGAAAGGGCAAGGCAACATGTTTCAAT
GTGATGAAAGAAAACAGCCAGTTTCTTGACGCGTTTGCAGCACTTGGTGA
AAGTTATCGGAGGATGTCGGCGACCAACTGGAAAGTTTCGTATGTAAGCT
GTATGGTTACAAGGAATCAAACATTGACAAAGTGCGAAAGAAGATCTtcg
aaaaaaatgcaaaaaagaaggaaaaattgtCGACCTAGCAAACTTACCAC
CCTGCAAATCTGTTCTTAAGCTCCACATACTAAGAGCTAACTATGTGGCT
AAAGTATGGAAATGTTCGTTGGAGAATATAGTAGATTATCCTGATATCAC
TCTTCATGGTTGGAATGAGGATGGTAGTATTAAATGGGTAGACGAAGTGT
TTCCAAATGATGTCGAGGACATACTCCTTCATGAAGGATACACAGATAAT
GATGACAACCCTGAGGAGGACAGTTATGAACCATCTGACGATGATGACGA
AGAATTTTAGATTAATTACcatcttttttgttattttttgttactTGTTT
CTATATGGATTGTTAATCATAGacaaaaacagcaatttttaccccctgaa
atgCTTAAGAAGTGatagtgatgacgtcacaaactgAACCTTTTTATGAT
ATAGCTGAAGTCCAAAATTTTCCACTTATTTGAACACTTTTTGAGCATTT
ATGTGCTCCTTCATGGgtttaaatgatcaaaataggtgaaaaatgagcaa
aaatagcaatttttacccTCTGAAACCCTAAAAAGTgtcaataatgacgt
cacaaactgaAATTACTTCATGATTTTGATAGAGTCCAACGTGTTCTATA
TATAAATGGAGTTTTCGACGATTTATTGGCTCCTCAATGGgtttaaatga
tcaaaatagatgaaaaatgagcaaaaatagcaatttttagcCCCTGAAAC
CCTAAAAAGTGCcaataatgacgtcacaaactgaAATTACTTCATGATTT
TGATAGAGTCCAATGTGTTCTATATATAAATGGAGTTTTCGACGATTTAT
GGGCTCCTCAATGGGTTTAAATGATGAAAATAGGtgaaaataggcaaaaa
tagcaatttttaccccctgaaagcctaaaaagtgccaataatgacgtcat
aaactgAAATCTTTTCATGATCTTGATAGATTCCAacgtttttcatattt
ttatggagtttttttaacattttgaagttttcaatTTGGTTCAAATGGTC
AAAACAGGCCAAAATTAGGTAAAAATGGCTGTTTTTTGCCTGTTTTTCTT
CAGGCAAACcctcggaaattttttttcgaaaattttttttttcaaatact
tcTACTACTTATTTTGAgtatttctgcaaaatttcgaGTCATTTCCTTTG
CTAGTTCAAAAGATATTGGCTGATGTTGTTGAGAGGAAAACGGCTTCTCC
ATAGTAATTCCTTACCCTGGCGCTTTAGGACCCCCTACTTCAGACCCTCT
GGAGACCAAAAGCCCCCTTAAAACGCTATTTACCTTTCCATTCCATAAAC
TAGAGATGTTAACCAACACGAAAATCGTATTGTAACTTAGGACCCCTCTA
GGTGGTGCTACCCCGCACTCAGGAGCTGGTCTATTTGTTTACCTTATTGC
TCCAAACAAAAGTGTTGGTTTGGAACGTTTCCAAAACTTTTGCCGTTTAA
TTTTTGCGGCTACAGTTTAACTGGGAATGCGTCTTTGTCATTTGTACACA
GTgccaaataaagaaaaaaaaattggcactgTGTACTAATGACAAAGACG
CGTTCCAATTAAACTGTAGCTGCAAATTAAACGGCAAAAATCTCCATGTA
GCGTGGCCCTAGAACTTGTTGAAAATTTAGCCAACCTCATAAATGAACAT
CTACATTAGTGtaatttctcttcttttctagcaatttttttaaaacattg
agTCACAACAGAATTGCCAACAAATCAACCCAAATGGTTGATTCTGCGGC
GAAAAAAAGTCAGCATAAGGAATTAGATAAAGAAGTATTATCGGGAACAA
ATTTGACTTAAAAAACAATACAGGTTGGTTTGGTGAATGAGTTGTGAACA
AATTTTGTATAAAGTAAAACCCTCAAAACTCATCATCTCACTGGATTttg
aaacaattgaaacaattgAAGTTTTAGAAATCCATACAAGTTTGTTATGA
TCATGATTTATGGTATGATAAAAGGTTATAcactgttggaaagatattct
cgAGGAGAACTATCAAATAAATTGAAAATGGGAGACGAAAAATACAGATG
AAACTACTGGTTTCATGACATAATATACTTTTTAGAATACTTGAACTTCG
CCGATTTCAAATCTGTTTTCAGCTTGTTGTTGTCactatttttggaccta
ccccggtggaggtcctataaattaacctgtgtttgttcgtccgtccgttc
gttcgttcgttcgttcgttcgtctgttaccaacttttctcaggattgaat
cataggaatcttttgatttttggtacaaaggtgcaaaatggtgatggcca
aaatgtgacgaagcccaattttagaaaaaaaaattttttgggccaaaaaa
cggctaaaaatcgggttttttggactttgtaaaaaattggatcattagtt
ttttctgattttttgcatgaaagtagggtaccatcataggttaAAGATGG
CTTTAtaaacagatttttgcaaaaaaaatttgttggctcaaaaagcACAT
gcttatctataagaattactaataaccatacatcaatgttcttagtcaaa
ttactcaatttttttatgaaatagatgtttttttttttgctcatgagggc
ttacttttagagagtatgtgtgcttagacatgaaattttggttgcttaca
gtatgtggcccccaaaacggcgatcaaatttgaaatttctctcaaatcta
gagcaaaagagattttacaaaaatttttgctgcatgaaaacctttaacat
ctctactttatttcctggaagttctttttcaaaattttcaaaatcaaaaa
tatttttcaatcgcttaaagataggtagcttttttctaatggcccccaaa
acggaggtttgaaattttagcgatttctcgagatatctttgaGATATGNt
atggaataagctgtgaaaattttagaaaataagcttaactgaaactgaaa
atattaagctttaaagatatttttctccttattatgcaaaaaaatgacag
aatttgccgtttttgctgattcagcgaaaaattttatatataatgctaat
tttttgttataaactattaactcaaggtgataggaatagaatcccaaaat
tttttgctttttctcatattcaGAATTTTCGGTTTAtttcaatgctgatt
ctagggctccaaaatactggttgatgctatatcttttacccagcctctaa
agtcacagatgtatttgcattttctgaactgcattaggtgtagaaagttt
cctataccccattttcataacttattttcaatatccaaggtgctagagtg
agttatatgcaatttttatctaattttggtgtcaaaatatttcctttaga
cgcaaatatgttattttgaatttgtcacaaaccagcaaaaacatgctcat
ttttaagtataaccatcattctttcaaaataaacaaaaatcgtttaattc
tgataaatctacaagtcagaatcttcattttaatgaaaacctccgttttg
ggggccgtctccgttttgggggccatatactgtagcgtgtttttatagaa
aaactggccaaattcgatatttttttataagcacattaattatcaattac
ttaggtattagcttttctggagattggctctttcattctctttcaagatg
cataactataaaccctcgaatgtgacggagcccgattttcgaaaaaaaat
gtttttgggcaaatttgggccaaaaaacggctaaaaaaggttttttttaa
ctttgtgaaatattggatcattgtttttttctgttttttttttgcatgaa
agtaggtaaaagatggctcaagtagatttttgtaaacaaagaatttttca
gctcaaaaaacgcgtctttatttataagaatcgctattaataagcataca
tcaatgttcttagccaaattactcaattttttaatgagatagatgttttt
tttgctcacaaagtcttgaatacaaaagaatatttcaggagcatgaaatt
ttggtttctaaacatttttttataagaaacaaacgactaattttaataga
tcgtcactatttgtgttctgaatgattgtttaacggtcatgctcacgtag
atatcaattatatttgttagaTGCATAACCaagtaggtccataaaagtat
cacttgttgaaTCTTaagtttttcatcttcaattttcgaTTCAACGgaaa
ttttcaataatatttgATAATTCTCCCGGAAATTATCATTCCAACGGTGT
ATAGCTTTTTgaacctacctcggaggtcctttaaattaacacACTCTCTT
CCCTTTCCCCtgtcaacaatcaatgatgaaatttaatgcgctatgtattt
tcgctaaacgctattattttctgactgattagTTTcgttttctccttatt
gctatctaacttttatCATTAGGTATGTCCATTCAAAGCATCTAGTTTGT
TTTAACATAGCATTAATGGGTGCtgagaaattatcaaaaaagtAAAGTGT
CTACATATTGAGACATTTGAGACAAACTTTAGAGCCTTTCTTTGCGAAAC
AGTTCCTTTATCCCTGAAAAGTTTATGTTATAAAGGTTGTGAATCAACCC
ATAAAAACGCTACCGTTTAGCAAACTTTTGTTGAGCAAGGATTACGTGGT
GTGCCTCTTTTTATTTAGCTTTAGTCactgaatttgaataaaaagaaaaa
cttatgACCTACTGAGTAAAATAGTCTTATTCGCTAAAATCTTAATTATA
ACTTTTGGCTTAAGGTCCTACAAATCATAACCGTTTTTCGTTCTTTCGTT
CGTCTTTCTGGCCTGTTCCTAGCTCTGTTACCATTTTTCGGATTTAGCTC
ATTGGGTTTTCCTAATTTTTTATAAACTGATTCAAAATAACgatatccaa
attttttttactgaaatAACGGGTCTAAGAGAGATTTTCGAAATATCCGA
GAAAATATCGTGGTATTAGCTTTGGGTCAACCGTATATAAACTTATCGTC
AACATAAATGGCAATGTTCAAAATTTAgttagacatttttgtaaagagAT
TCATTTGAAAACCGGTAGCATCGATGATGCCGATAGTTAGTATTTTATAA
ATGACAACCCCTAAtctataaaaaaatagaaatagattctagaaatatta
taatcaaaCATCCATATATcatcgaaaatcaaaaatcaactcGACCTTGA
GGCCAGACAATACTTAataagtttaattttttagatAGACTTTTGAAGGT
AGCTAAAAGATAGCAAATATGGATTATTCGACGTCCTCTAGGTCGACTTG
AAATTTATTTCAGATAGTAGACAAAATTTCGAGACtactttttcaatcaa
aaccaTGCCTTGCCTTGCCTTGCCTTGATTCATCCGTGAGGTGAATCAAA
accataatcattttttagataaaaattgaaattttgtgaaaatggtTGTT
AGAGGCTAACTggttcaaaaattgaaatcttgATGTGTTTAGTCAACATT
TTCCTTCAAGCGTTACTCAAGATAACTCAAAAACCCATTCATCCCCATAG
TGTTTCTAAAACGGCTAAAAGATTTGTCCACCTTAATTTTGTAACAAACC
CTGTTGTTATACCCAAAAtaaataagaacattctaaaaacatcgtgaaag
ttttttcatactctaaaacatccaattttCTTTTAGAAAACTAGACTAAA
AATAGGAGCATATTACGAAcattttttagacttaaaacccACGGTCCGAA
GGTTTCAAAATCTTCGGACgttcttgcaaaaaaaatttaaccgaaagaac
gaaaaaaacaATATGCTTTTATAATAAGAACATACGATATCTAAGCTACA
aattaaagaatattttaagaacattcaagtTTTTTCAGAGTTTGAAACat
acaatttcttagaaaattagaCTAAAATATGATTGTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027774-exon-sc0000645-1491911889:49912..50965 | TCONS_00027774-exon-sc0000645-1491911889:49912..50965 | Clytia hemisphaerica | exon |
| TCONS_00027774-exon-sc0000645-1510915933:49912..50965 | TCONS_00027774-exon-sc0000645-1510915933:49912..50965 | Clytia hemisphaerica | exon |
| TCONS_00027774-exon-sc0000645-1575043694:49912..50965 | TCONS_00027774-exon-sc0000645-1575043694:49912..50965 | Clytia hemisphaerica | exon |
| TCONS_00027774-exon-sc0000645-1491911889:59793..59900 | TCONS_00027774-exon-sc0000645-1491911889:59793..59900 | Clytia hemisphaerica | exon |
| TCONS_00027774-exon-sc0000645-1510915933:59793..59900 | TCONS_00027774-exon-sc0000645-1510915933:59793..59900 | Clytia hemisphaerica | exon |
| TCONS_00027774-exon-sc0000645-1575043694:59793..59900 | TCONS_00027774-exon-sc0000645-1575043694:59793..59900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000645 | supercontig | sc0000645:49912..59900 + |
Blast
The following BLAST results are available for this feature:
|
