|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027776 ID=TCONS_00027776|Name=TCONS_00027776|organism=Clytia hemisphaerica|type=transcript|length=524bp
GAAACGTTTAATTTTTAGGGTACACTTACATATCCCGAAGGCTCTTGAAG
AAACGATTGGCGCCCCCATGATTCCTTGCGACAGCATTCTCAAAGACAAT
TCTTCATCAATGATCAATGAAGCAGCGACAGGGCTACATTACATGGCACT
TTCAAGTGAAGATGTGTTGTTGTCAACTACTGGGTTTTTCAGCTACAATT
ACATCAAGGTTGACGTTTCTGCAACAGATAATATTTGTAAAGATGTTACA
TTAAATGCTCAACTGGTGTTAATCAACGATACATTAATTATTAATTCAAA
GTATGGACTGATCCAAATGCGACAATGTAAGTGAATCTCAAGACTTAAAA
AGGGATAATCAggtggtttgagatatttggcatgTATGGAATCCTTCTAT
CCCCCCCCCCAGCAGTTTGcatgaatgggcattttcggttgcgtgaatct
gggctattttgtgcgtgagtACGTGAATTCTCCCTTTTTTCCAGTGTGCt
gttcccgattttccaattttcccc Run BLAST on NCBI protein sequence of TCONS_00027776-protein >TCONS_00027776-protein ID=TCONS_00027776-protein|Name=TCONS_00027776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
KRLIFRVHLHIPKALEETIGAPMIPCDSILKDNSSSMINEAATGLHYMAL
SSEDVLLSTTGFFSYNYIKVDVSATDNICKDVTLNAQLVLINDTLIINSK
YGLIQMRQCK Run BLAST on NCBI transcript from alignment at sc0000645:84933..88202+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027776 ID=TCONS_00027776|Name=TCONS_00027776|organism=Clytia hemisphaerica|type=transcript|length=3270bp|location=Sequence derived from alignment at sc0000645:84933..88202+ (Clytia hemisphaerica)
GAAACGTTTAATTTTTAGGGTACACTTACATATCCCGAAGGCTCTTGAAG
AAACGATTGGCGCCCCCATGATTCCTTGCGACAGCATTCTCAAAGACAAT
TCTTCATCAATGATCAATGAAGCAGCGACAGGGCTACATTACATGGCACT
TTCAAGTGAAGATGTGTTGTTGTCAACTACTGGGTTTTTCAGCTACAATT
ACATCAAGGTTCgttctttcttttttcctaCGAATTTGGTTTTTCGAGCG
CGATATAGCTCTATCAAGACTAGGGATGCACAATGAAAAAACATAGGGTT
CGACTTCTCATCTAGAGGAACAGTTAGTAAAAACaattcatgtttttttt
gtttttattgatccTTTAGGTATAAGGTACCCGTTGACcgtaaaaattct
aaaattcttGAATTCTCCGTTGAaaacaacattaggggtaaagggataTA
ATGACGCCATAGATTTTGCACTTAagaatgcgatatctcgagtttgtaAG
TGAGGAgttcgttgacccctcattgaaTCGATTATTTACGATATAATTAT
GGGGAATAAAAGATAGGAGGGTTTACGAGGCTTGAGTTTGACTTTaaagt
ttttctaaatattGGGCATTCTTAGCTGATGATGTcaccaaaacagaaaa
aatgcgatatctcgagattgaaaaggagttggaaGATGGTTTACCCCTCA
TTTTATCGGAAATTTTATGGAAAAGAGGTTGGCATAGAGGAGGAGGGGTA
AATGACGATATCAGAACGAGTATGTGTAATGTCcaatgatgtcatcaaaa
tctgaaaaattcaatattttgagtttgagaaggatttaaaaATTTGTTGA
CCCCTCTTTCGATTGGTGATCATCAAAAGAATCTTTTGGAACAATGagaa
attgatttcagtgatgTGGAAAAGTAATTACCCTTTTGATGATGTCAGAT
TGACGTCACAAAACACTAAGTTTATATAACAATATAtaagcaaactctac
ataatgccttaaaacactacgtataagcttagggaaattcctcacccttc
aaggtcttaagttaactttacgtacatgtgaaaaaagctttaagaaAGCT
TTATAACTTTCTCTTTAATCACTGCGTATCATGTTTTAGGTTGACGTTTC
TGCAACAGATAATATTTGTAAAGATGTTACATTAAATGCTCAACTGGTGT
TAATCAACGATACATTAATTATTAATTCAAAGGTATTATCGATAatttat
ttgtgtttttttatcaATTGTGCTTTCTTTTGCTCCTTTCgattctctat
aactcgaactgCCATTCCTCAAATTTCATTCGCTATTTTGGTCCTCTGTT
ACTCGACTTCCCCATAAATGGAACCTTTATAACGCAAATCTTCTGTACGA
GTCGCAATAGTCTATAGTTCGAActgctttgttttcttttactttAAGTC
CGTTCgcccgttcgttcgttcgttcgttatgaGCTGTTCTCCAGATTGGc
tcattaaatttttctgatattttgcacaaataATCGAAATGGTaaaccca
atgaagtataagcccgaagggctagaagtcaatctccttggtaggatttg
aagccaacaaatcctaccaaagttgcgcggccttgaNgtggtttttacac
aaatgacagattgaaactaaaatttaccgctaaatttcgaaaaaaatatc
aatcgtaaacaaaggaattgctagattcaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNaaaatgcggcgcattttttaaggcttcactt
tttcttgcctgagaaaggttagagattgaactctagcccttcgggcttta
aactcaatgggtaaaccctcgaatgtgacggagcctaattttcggaaaaa
aattttggggtaaatttcagccaaaaacggctaaaaaaggtttttttttt
tttaatttcttctgatttttttgcatgaaagtagggcaccatcataggta
aaagacggctcaagcagattttcgcaaaaagtgtttttgtagaaaaatgg
gccaaattcgatatttttttataaacgcATTAccaattacagttgacgct
ctctaattcgattttcaaggggaatcggattttcaaCGAAtacgggagcg
tatcgaatagtaggaaGTCTCCCTAATCCGATAAACACGAGGTAAATATC
GAATTATAGAgctgagaaagaaaaatataagcgAGACTCGATTGGTTTGA
ACGCGAATCAGGACAAATGTCTAAGTTCTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAAATGTCTAAGTTCTT
GCTGAAAACCTAAGTTCTTCGGAAGAAAACTTTCGATATTTgcctgtttt
gaaaagttttgaggaATCGAATTTCGAAATTACAATTCAAAcgcaaaaaa
atctaaaatttgaatttcgaacTCCGTCCTAAAGGCCTTTTTACACGCta
gaaatcgaataagagagcgaaaAACCTTCGagggacttcaaattttcatc
gaaaacgggagcttatcgaataatagaatgtcgaatagtgGAGCgtagtt
tatgagagtttcttaaggaaatttgacggtgactttcaatttgatcgaaa
acgggagcttatcgaatagtagaacgtcgaattagagagcttcCACTGTA
CttagttattagcttttctcgatttttatttttgctatgtgaaGCTACTT
TCAATCGATacgctgacctggttcccacaTTGAAAGCTTAACGATTTAAA
ACACCATCGTGTACTTTAATTTTGAATGTTGCTTTGGctcttgttttttt
attttgaaagtttaaacTAAAGATTAGAATCCAACTTTCTTTTTCAGTAT
GGACTGATCCAAATGCGACAATGTAAGTGAATCTCAAGACTTAAAAAGGG
ATAATCAggtggtttgagatatttggcatgTATGGAATCCTTCTATCCCC
CCCCCCAGCAGTTTGcatgaatgggcattttcggttgcgtgaatctgggc
tattttgtgcgtgagtACGTGAATTCTCCCTTTTTTCCAGTGTGCtgttc
ccgattttccaattttcccc Coding sequence (CDS) from alignment at sc0000645:84933..88202+ >TCONS_00027776 ID=TCONS_00027776|Name=TCONS_00027776|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0000645:84933..88202+ (Clytia hemisphaerica)
AAACGTTTAATTTTTAGGGTACACTTACATATCCCGAAGGCTCTTGAAGA
AACGATTGGCGCCCCCATGATTCCTTGCGACAGCATTCTCAAAGACAATT
CTTCATCAATGATCAATGAAGCAGCGACAGGGCTACATTACATGGCACTT
TCAAGTGAAGATGTGTTGTTGTCAACTACTGGGTTTTTCAGCTACAATTA
CATCAAGGTTGACGTTTCTGCAACAGATAATATTTGTAAAGATGTTACAT
TAAATGCTCAACTGGTGTTAATCAACGATACATTAATTATTAATTCAAAG
TATGGACTGATCCAAATGCGACAATGTAAGTGAAAACGTTTAATTTTTAG
GGTACACTTACATATCCCGAAGGCTCTTGAAGAAACGATTGGCGCCCCCA
TGATTCCTTGCGACAGCATTCTCAAAGACAATTCTTCATCAATGATCAAT
GAAGCAGCGACAGGGCTACATTACATGGCACTTTCAAGTGAAGATGTGTT
GTTGTCAACTACTGGGTTTTTCAGCTACAATTACATCAAGGTTGACGTTT
CTGCAACAGATAATATTTGTAAAGATGTTACATTAAATGCTCAACTGGTG
TTAATCAACGATACATTAATTATTAATTCAAAGTATGGACTGATCCAAAT
GCGACAATGTAAGTGAAAACGTTTAATTTTTAGGGTACACTTACATATCC
CGAAGGCTCTTGAAGAAACGATTGGCGCCCCCATGATTCCTTGCGACAGC
ATTCTCAAAGACAATTCTTCATCAATGATCAATGAAGCAGCGACAGGGCT
ACATTACATGGCACTTTCAAGTGAAGATGTGTTGTTGTCAACTACTGGGT
TTTTCAGCTACAATTACATCAAGGTTGACGTTTCTGCAACAGATAATATT
TGTAAAGATGTTACATTAAATGCTCAACTGGTGTTAATCAACGATACATT
AATTATTAATTCAAAGTATGGACTGATCCAAATGCGACAATGTAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027776-exon-sc0000645-1491911889:84933..85140 | TCONS_00027776-exon-sc0000645-1491911889:84933..85140 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1510915933:84933..85140 | TCONS_00027776-exon-sc0000645-1510915933:84933..85140 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1575043694:84933..85140 | TCONS_00027776-exon-sc0000645-1575043694:84933..85140 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1491911889:86072..86164 | TCONS_00027776-exon-sc0000645-1491911889:86072..86164 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1510915933:86072..86164 | TCONS_00027776-exon-sc0000645-1510915933:86072..86164 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1575043694:86072..86164 | TCONS_00027776-exon-sc0000645-1575043694:86072..86164 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1491911889:87980..88202 | TCONS_00027776-exon-sc0000645-1491911889:87980..88202 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1510915933:87980..88202 | TCONS_00027776-exon-sc0000645-1510915933:87980..88202 | Clytia hemisphaerica | exon |
| TCONS_00027776-exon-sc0000645-1575043694:87980..88202 | TCONS_00027776-exon-sc0000645-1575043694:87980..88202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000645 | supercontig | sc0000645:84933..88202 + |
Blast
The following BLAST results are available for this feature:
|
