TCONS_00027779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027779
Unique NameTCONS_00027779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027779 ID=TCONS_00027779|Name=TCONS_00027779|organism=Clytia hemisphaerica|type=transcript|length=483bp
CACATGTTCAGACGAAATTTGTCAGATGAATTCTTCATTTAGTGTTTGGT
TGAATGAAACGCTTCGTATCCAAGATTACGAAATCGTGGACATTAGCACA
TCACAATATCACAACAAAGTGTTTATTCTTCTACACAAGTTCAACTTGAC
GAGGTCTGCGGTTGTCAAAACTATGTTGTTGGAAATGAATTTAGCTAGTG
gaAATGGCTCACATAGCTGGCAATTCAGATTATTGAATAGTGACCTTCAA
TGCTCTCCTAATCGACTACATATCTCAGCGCTgttccatttttttgtttt
tggaagTGACTCATGTCTACTGTATAGttCAAACTTTGGTATCAGTTTTG
CTCAAGTAACATATGATAATACTATCGTCTCATCAATTCATACCAACTCA
AAAAATGGACTGTTCATTTTCAGGACTTCAGAAAACGAGCAGTTTTCAAA
CATTATAACCGCTTATCTACTTTTGGCTTTACA
Run BLAST on NCBI

transcript from alignment at sc0000645:89481..97391+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027779 ID=TCONS_00027779|Name=TCONS_00027779|organism=Clytia hemisphaerica|type=transcript|length=7911bp|location=Sequence derived from alignment at sc0000645:89481..97391+ (Clytia hemisphaerica)
CACATGTTCAGACGAAATTTGTCAGATGAATTCTTCATTTAGTGTTTGGT
TGAATGAAACGCTTCGTATCCAAGGTATATTCTTGTTCTGTATTTGATGT
GTTTCGATATGAATAAGTTTGCTGATGTCAGGGAGcaagcactgaccttt
atatatccctggacaaagctatagccgtcatctttgatcggagttttttt
tgaaagtggtaacCTCGacgaagccattgcagtgttaaaaatcaacgtct
aacggcgctacatcagcCAAAGTATTctaggaaaagtagatctagtgCAT
TCGATGCATTACACCgcttgagtagtgctaccattttTAGGGTACCACTT
cgaaaaaaactccaatcaaagattttggttcGACGCGATTGAAAAatttg
gtccagggtatattttttcttcgtcgaaaataaggtcctcaaagatgaaa
tactcttcttcgcaaaagtcttcattttcttctttatcaacttttttcat
tacgatttttaaatcttcaagttcaggaatagttggcctaacagaaaatg
tatgaCATGCCTCAGTTTTTTGGTTACATCAGAcacatttcaatattttg
tacaaggcaaataaatataaaaaattcactatggtcagagccctttaaAT
TTGTACCGGTCATTTACCGACCCTTAAAAGACCGTCTAAAGATCGGTCCA
ATTCTCAGGTTCTTATGATTGCTTAGGCAGAGAGTCACAtatattgaaaa
caaattaaaaatatttcggtgAGCTCGAACAGTTTCTTCTAAAGGAGTTT
TCTGCCTAGTGGTTGATTGGTGAATTTATAACACTTGCTTACTTACACTT
ACACTACACACTTATGGGGAGGGGGGGGATTGATGCCaacgaagtataag
cccgaagagctagaagaatttccttggtaggatttgaagtcaACAAATCC
TACCGAAGTTGTGCGGCCCAACGCGGCCCGCCTGGTTTTTCAACAAATgt
cagattgaaactaaaatttaacgcaaaatttcactcaaaaacaaaggaat
cgctagatTAAAACCGCTGTCAAAAATACGgtgcatattttaaggcttta
cttGTACTTGCCTGAGAAAGATTatagattcgcttctagccttccgggct
tatacttcattgggggATGCTGCCCAAGAAATGGGTCCTTTTTTTGTGGT
ACTTCTGATTACTTtcatataaaagattacgtcatgaacttTAAATAGAA
AATTAATTCTTTAGATTACGAAATCGTGGACATTAGCACATCACAATATC
ACAACAAAGTGTTTATTCTTCTACACAAGTTCAACTTGACGAGGTCTGCG
GTTGTCAAAACTATGTTGTTGGAAATGAATTTAGCTAGTGGTAagtttgt
ctgtacacaaacccagtatctacggcttatttcaaaatttattgccgtag
cagagggtctgttgtcattgtcttttgccatttgagattttttgaaccga
ccgctgcgattgagtgttggtgagagaggggagacgatgagtgaagtgtt
gctatttatataTCATACTTGATCGCaaaggtctccgtacgggaattttt
ttatcaaacagacataTCGCACAGTGTaatacgaagcgataaacgtgaga
tacactctggtacagagtattGGTAAGTTGGCATgtaccaaaacaaacaa
aagattttctgactgatttttattCATCAACAATCGGTAAAATTGCCAGT
TGCCAATATTGGGTGTTTTCTAACTTTAGCAGCAGTAATTCTTTTTATTA
AGTTAACTAGTCGTTTTAACCGAGGGCAAAAGTAGGGGTGGTACTTAGAC
AAAAATTGGTGCTGGATGTTAGGAGCGGACCTAAAAAGTCGTTTTTTCAC
CTAATTCTGTAAAAGCCCTTTAATGTATAAATTTTCGCCAAAGATTAATA
ATCTCTCTAAGGATTGGTTTTCGGAGGTTAAAAGGTTACTGTACACACGT
GTCCCCGGAATGTTACATGGAGTACTTACAGTGTTAAAAATTCCCCTCTG
TCTCAGAGAAGTAGTTTCAAGATTCTGcacaattcaccaaaatttcaacc
aTATGTGCTAATTTGTTGTGTCTCAGACGACAAACCTGGCTTTAAACACT
GGAAATATTTAGGCCAGCGCTGTTTGCAGCAAAATAGATTAGAGCCTTGA
CTAGCCTAGActagattttcaaaatggtgactttgccaaacgctcctagt
ctacttgattggactcagcgtcataaaaaattatcaaaaagcaaaaatca
gccaaaagtagactctagtctaagcCTTGACAGACTaaactttattttta
cttttaggaAATGGCTCACATAGCTGGCAATTCAGATTATTGAATAGTGA
CCTTCAATGCTCTCCTAATCGACTACATATCTCAGCGCTgttccattttt
ttgtttttggaagTGACTCATGTCTACTGTATAGGTAAACATACCAATCC
AATTTCAGAGACTTTTGAATGTCTTTCATTAGCAAAAATCGGCTTTGGCT
TAAAGTTGTCTCTGTATTTTTCCTCTACAAGTtttggaatttttaaattt
ctaaaatgcATCTATATCTGAATCATTTTATCCTAGCTTTTTGGTATGAA
AGAGGATTCTTAAATTGTTAATCTTGGATTAAAGGTtatattttacatat
ttttacgaaagtttctgcccttaaagtaagtgttcccgtttcatatcaga
cacatatttcatatcaggacagtgtctccctattgttatattgtgcttat
ataagcaaaaaaatgttttttcttttcctttttctgaccaatcttgctcc
acatttgtgtTAATCTAGtgttaaaaagcttgtaaattgaaattgacgag
taagcaaacgatatcactcttatttaaaaacaaaacctttaatcaaaTTC
TCAAGCTTTTTCCACTAGAATAATGCAAAAGTCTATTTTGACCTCCTTTT
TTTCGAATCAGCTTAAATCTTCTGACAAGaggaactttttttttaaattt
aatgagtttttttttttaaataatagtgatatcgtttgcttactcatcaa
ttttgattcacaaaCTTTTTCACACTGGATTGGcatacggatgtggagca
agattggtcagaaaaaggaaaataatttttctttgcttatcaGCATCaaa
taacaataggcagacactgtcctgatataaagtatgtgtctgatatgaaa
cgggaactctttagtaaaaataaaacctttaaagaaaattttttagagAA
TTTTCGTGGCTCACCCGGTAATTTTCATCTCGTTTCGGTTGTTCTGCTAA
GAAGGTTTAttacttttcttattttttctagttCAAACTTTGGTATCAGT
TTTGCTCAAGTAACATATGATAATACTATCGTCTCATCAATTCATACCAA
CTCAAAAAATGGACTGTTCATTTTCAGGACTTCAGAAAACGAGGTTAGTG
AAAGTTTCcggaaaaaaatcgaaacagagtatttatatatcaaaattCCT
TATagtttaaggcttggggacacgagaagtttttttcctgttggtgcaat
gcaacatgctatATCTCACCAACACAAGAAGAAAAGTGTgcgtcccatgg
tttctttttttgtttcatgggacaaaaagtgagggaaatacccaaaatac
ATGCTGAtattgtccctgggacaatggagcataattaattcgaatcaatt
ttgctccattgctCCAGAGATaaaagtgagagaagcacaaatgttgttaa
aaaaaaggtggggtggagacacgagaaagcgtttcaggttggtgggatgg
agcatgttgcattgcaccaacacgaaaaaaacttctcgtgtcccgaAGCC
TTTATAATGAACTTTTAAATGACCTAATTACTCGAAATATCTTCANTCCC
GAAGCCTTTATAATGAACTTTTAAATGACCTAATTACTCAAAATATCTTC
ATTCAAATTACCGTTGGAATCGAATAATATTCTATTCTATTAATAGCGAG
GATGGttttgttggacctacctggaggtcctataaattaacctttgtccg
tctgttcgttcgtccgtccgcttttctcgagattggctctttagtttttc
ctgatttttggtacaaaaatgcaaaattgtaatgcccaaaatgtgacgga
gcccgattttcgaaaaaaaattcatttccggccgaaaatgtcggaaatat
gccggaaaaaccgtttttttggcattttctcaagatttcatcattagttt
tttctgattttttgcacaaagatgcgtattaacaatgctcaaaacttggc
ccagtctgatttttgagaaaaaatcttttccggtcgaaaatgccggaaat
atgccggaaatcgccgtttttgcagattttcaacggactttttccttata
tttcgttgtttttgcaCACAAAAACGTTATttatagcaatgtccacgatc
aagcatggttcaattgtcgataaaactgatttttgaagccggtactttct
aaaaattgccggaatagccgattttcgccggaaaaacggtatttcttgaa
tttcttgacctgtactttatatttttttatgaaattttgcacactgatgt
caAATGACAATATTTAAAAAgcgacagagcccaatttttgaaaaacattt
cttccggccgaaaatgccggaaatatgccggaaaaactggttgtTTTGGC
ATTCTCTCGAGATTTtatcgttagttttttctgattttttgctcaaagat
gcgtattaatattgtccaaaacatggccgagtccgattctttagaaagtt
tttttccgcccgaaaatgccggaaatatgccggaaatcgccgtttttctg
gattttcattagactttttccttataattggttgttttttcattcaaaaa
cattcttaatagcaatgcccaccatcaagcatgtttcaattttcaataaa
attgattttttaagccggaactatttaaaaatcgccggaacaacctattt
tcgacggaaagacagtatttcttgattttctcgagctgtactttatattt
tgttatgaaattttgcacactgatgcaatatgacaatacctaaaatgtga
cggagcccgattttcgaaaaaaacatttttttccgacTGTAAATGCCGGA
AAATCcggtttttttacattttctcgaattttcatcttcagttttttctg
atttttttgcagaaagatgcgtactgtattcgcaatgctcaaaacatggc
tgagttcgatttttaagaaaattttttttcaggttgaaaatgccagaaat
cgcCTTTtcgcagattttcattagaattttttccttgtatttctatgttc
ttcacacaaaaacattattgataacaatgctcaccatcaagcatgattca
actgtcaataaaaactgatttttgcgaccagaactttctatttatttttt
tctatgcatttttgctaaacgctatattttctgactgatttttttctcct
cgcattgctatctaactttcttTCATTAGGAatgtttatccccactgagg
aaaaaagttctaccgaggctgtgagacaggggtgtctgcATGAAGTGAAG
CATGTAAATTCGTCGTTCGAAATTTATCTAATATTACTAAATTtggtttc
aatttttctaaaataatttgATCAATATCTGCTCTCTTGTCAAATCCTCC
CTGCACACACCTTTTTACAAGTAGAGTGGTGAATAATTAAGCGAGTGACA
CTTTCATGCAAATGTTAGATATTTTTTCTTCCCTTTTGGCTAAAGACTCT
GCTAATTAAAAGACGAAAAGAACACGGGAAATAGGATTAAAGCTTGGTTC
CCATTGGGTGATAAGAAGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAAGAAAACAGCCAGCAAATGGTTTCTAAGTAACTCAGGACAATTCTC
TGAATCATTCTTCAGGGAATATGGAACTCTTGAAATTAGCTTTGTAAATA
TGTTTATTTGGTCAAAGgactattttgaaagaaaacagcCAGCAAATGGT
TTCTAAGTAACTCAGGACAATTCTCTGAATCATTCTTCAGGGATAATGGA
ACTCTTGAAATTAGCTTTGTAAATATGTTTATTATTTTATGTCTATTTGG
TCCAAGgacttttctttttgaaagaaaacagcAGCAAATGTTAGTGATGT
ACACAAACATATCTTTTCTGCGAAAAAAATAAGGAACATATTTCCGCTTT
GACACTTTCATTGACTTTTCCAAGCCAGtgcaactttttttaaatttgcg
ttATTTCTTAAAATTCACTGCGCCATCGCCATAACTTTGAACACCGTACA
TGTTACAGACCGATTTATAATACCTTTCGAGCATTACCCCTAACCCTACA
GGTGCCCCTACCATGGCCTTATGTTTTACTATTAGTGTTTTCCCAACCCT
CGCAAGAAAGGATTAAACTGGGTGagacacaaaaaagtttctctctatAT
AAACCTTATTAAGAGtaattgtgcaaaattttaggatCAAAGCtcgtcca
gatcaggttttatcgaccgccggaggcggtttctttcatagtggtacgct
aatctcgttttgccatggctcattactttgtctaccatttactttcggtt
tttttaactatcagttgtttctcttttttttcactaaatgtcttttattc
ggaattgaataatcaaGACATGAAAAAAGACTATATTTTATAATCTGTTT
TTAATGAATAATCTANCCCAGATGTTTCTcttttgtttcactttttgttt
cgtgatgcgtgatggaaggcggtcgtttcagtgtggtttacatccacact
gtgagcTAGTTACTTTTATGACTTCATGttgtgaatttgaaaaattaaaa
aaattttttttgaaatgatgATACTTTTTACTAAGAAAAATTCTTCACGT
GAAATGCAAAACAGGCAATTATGTTGAATGGGCagccttttatctttcag
aaatttcaaacaaaatctaAATAACTTTATTAGCTCGACTGTGACAtaca
ttttaaaataaattttatggaATATCTATTAACCTGATCTGATTTTCGCC
TTCTGTTTCTTGGTGTTTTCTTATGACGTGCCCTATGTTGCAAAACTATT
TCTTCACgatttttgcttttaaaagtgaaagtttttcagaaaattcagtg
gggatgggaaaaaaggTAAATNAAATCCCATGAATTTAATAAAGTCAATT
ACTATTATATACTGCAGCAGTTTTCAAACATTATAACCGCTTATCTACTT
TTGGCTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015690XLOC_015690Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027779-exon-sc0000645-1491911889:89481..89554TCONS_00027779-exon-sc0000645-1491911889:89481..89554Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1510915933:89481..89554TCONS_00027779-exon-sc0000645-1510915933:89481..89554Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1575043694:89481..89554TCONS_00027779-exon-sc0000645-1575043694:89481..89554Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1491911889:90745..90870TCONS_00027779-exon-sc0000645-1491911889:90745..90870Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1510915933:90745..90870TCONS_00027779-exon-sc0000645-1510915933:90745..90870Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1575043694:90745..90870TCONS_00027779-exon-sc0000645-1575043694:90745..90870Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1491911889:91838..91964TCONS_00027779-exon-sc0000645-1491911889:91838..91964Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1510915933:91838..91964TCONS_00027779-exon-sc0000645-1510915933:91838..91964Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1575043694:91838..91964TCONS_00027779-exon-sc0000645-1575043694:91838..91964Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1491911889:92862..92973TCONS_00027779-exon-sc0000645-1491911889:92862..92973Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1510915933:92862..92973TCONS_00027779-exon-sc0000645-1510915933:92862..92973Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1575043694:92862..92973TCONS_00027779-exon-sc0000645-1575043694:92862..92973Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1491911889:97348..97391TCONS_00027779-exon-sc0000645-1491911889:97348..97391Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1510915933:97348..97391TCONS_00027779-exon-sc0000645-1510915933:97348..97391Clytia hemisphaericaexon
TCONS_00027779-exon-sc0000645-1575043694:97348..97391TCONS_00027779-exon-sc0000645-1575043694:97348..97391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000645supercontigsc0000645:89481..97391 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.672278	0.650025	0	0	0.0470289	0.137981	0.0288545	0	0	0.431594	0	0	0	0.275922	0.0410456	0.354113	0	0	0	0.752816	0	0.340643	0.312979	0	4.58408e-08	1.08931	0	0	0.187924	0.826218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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