TCONS_00027787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027787
Unique NameTCONS_00027787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027787 ID=TCONS_00027787|Name=TCONS_00027787|organism=Clytia hemisphaerica|type=transcript|length=2591bp
atctGTGTTCATTCCTAGTAGAATTAATTGAATGTCAAGAGAGTACttac
aaattatttttgttttgtcttttgaGAAAATGGTCCATGGGGAAATTATC
GGAACATTTTATTCGTCTTcgtaaagatataaaaaataggACTTTTTTGA
AACAATCACATTATAGCACTCACTTGTATGTGTGTTGTTGTGAGTGTGGT
AAAATGGAAGCCTTAAGTCAAGAAGTTGAAAGCACTGCATCATCGAGCAA
TGGCAAAGGAGACGAAGAAAAGGAATTATTTTCCGTTAATGAACTCAGGT
CAGTTCCTTTGAAAAAGATTCTGCAGTCCTGTGTTGTCGAGCATGTTGCT
GCTTTTTATCAAGTGGCTGCAGTCAGAGTGCTGATAAAAGATGGTGAACT
ATGGAAGGTGCGTCAAATGTTTGAGGAAAAGTTGAGGTCAGATGGGCATA
TTGTTGGTTTTTTTTCATGCCCTACAGCTTTGGAGCAgaagaaaaatggt
caaaaactcCGCCTACCCGGACTTTCATTTTGGGTCATGTTTGATTGGCC
TGAATACGCGCTAAGCTCATTTGAAAACCTGCTGACCAAATTGTTCATGT
CCATTGGTTTGGAACATTTGAGATGTAAAGCAATCAATGGAAGAGGCTCA
CCTAGAGCGTACGTGGACTACAATTATACGGGTGAAGTGCCGTGCCCTGA
ACCTTTTGTCAATGGCATTCGTAATTCGTTCCCCGATCCAAAAGAAAGAC
TGCTGTTTCTTCGCAAGTACTATCAGCTTTTGCTTCATGGAAAGTTTCCA
CAAAAAGAAAAGAAATTGTGTCTTGTTGGGAAATCCGACAGTGGAAAGAC
CAGTTGGTTTGGTGCCTTTCAAGGCATCATCCCAAGTCAGTTAATCGCCG
GTGTAATGAATGACGGCAAATTCTCGGCATCACTCATCACAGCACGTACT
CAGATAGTCATGATGGACGAGTGGACGCCCGATAGCTTGGCATGTGAAGA
CGCAAAAAGAGTCTTACAAGGCGGATTAATTTTCGTCCCACAGAAGCATA
AGGGTGCCTCAAGAGTGAAATACAACTCGGGATTCTACATTGCAACAAAC
AATTACCCTGATTTTGGAAACGACAAGGACAACAACGCAATCAAAAATCG
TTTGGAAATCTTTAAGACGAAGTCTCTGACAAAGAAAGACCCACGGATTT
CTCGTTGGCTCCGTGTCAATTGCATGCTCGTTTTCCACTACGTTGCTCAC
ATTTTGAGGAACGAACCACTTTTCGATACAAGCATGGAAGACGACAGTGA
CGTATCAGATGGCGAAGACGGAAACTCTCTAGACGTCAACACCAGTGGCC
GTGGAGCCATTTACAATGACTTCGACAATGATCCTCAGGCGGCTCTATTC
GAAGAAGACGTCGACGAATTTTGTTTTTCACAAACATCAAATCTACGTCC
GAGCAACAGTAACGATAGCAGCGCGTCCGTACAAGAAGCTGTAGACCACG
CTGTTATGTCTGAAGACAGAGCCGTTGGAGTCAACTACAACCACTTGAGT
TGGGAGTCAGAGCTTTTTGACAACACGTCTGACCACTGCGATAACGAATA
TTGTGAGAAGGTGTTCGAGTTGGTGCAAAACGTTGATAACTGCTGGGATA
AACTTGGTGTGAGTCCGGAGGCTGTAGCAATGTTCAAACGTCGTCATAGG
ACCAAGTGGGACCTGCCTGAAACCGTCTATGACGCCTGGCTTGTGAAACA
TGGACTCGAAAGACCGTTTTTCGACTACCACCTGTTCTTTGACTTTCTCT
ATCCAGAGTTGGCAGACATGCTAATAAAAAATCTGACACAAAGCCAACAG
ACCCACAACGAAAACGACGAAACAATACCACCCTACAGGTCACAGTCGTC
GGTATCCGTCGGGGAGAACCAAAGCCAAGTAGCTCGCCCAAGCCAAGGAG
TTCGCACAAGCCAAGAAGTTCGCACAACACAAGAAGTTCGCCCAACCCAA
GAAGTTCGCCCAACCCAAGTAGTTCGCCCAACCCAAGAAGCTCTCCCAAC
CCAAGAAGCTCTCCCAAGCCAAGAAGCTCTCCCAACCCAAGAAGCTCTCC
CAAGCCAAGAAGCTCTCCCAACCCAAGAAGCTCTCCCAAGCCAAGAAGCT
CACCCAAGCCAAGAAGTTCCCCAAGAAGCCGATGATCACATACCATCGTA
TCAACCGCAATCATCAAAATCCAGCTCAAGCTCTTCAGAGGACTCCGAAA
TTGAAAATAGCCCCCTTCGCAAGAAGAGAAAGATGAGAACAGTCGTTTCT
GAAACTGAGGACGAGGAGACAACGATTACCGAGGCAGAGAAACTAAATTT
CCTAACGCGCGTTCTGAATAGTACTCCAGAAAAAAGACAATCGACAACTT
GAGCGGAACACAACAATATTGCCTGCTTTTAgaattgttttactttttta
actcGTAGAATTAGATTTATTGCAAATTGTATACCTAAAATATCCAAAGA
TCGTGTTTGAATCTGACTTTATTTAACTTTAAACAAGTTATTCTCTCGAT
AATTATTTTCAAgtctctctcttttttttttaaataatcga
Run BLAST on NCBI

transcript from alignment at sc0000645:183284..187625-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027787 ID=TCONS_00027787|Name=TCONS_00027787|organism=Clytia hemisphaerica|type=transcript|length=4342bp|location=Sequence derived from alignment at sc0000645:183284..187625- (Clytia hemisphaerica)
ATCTGTGTTCATTCCTAGTAGAATTAATTGAATGTCAAGAGAGTACTTAC
AAATTATTTTTGTTTTGTCTTTTGAGAAAATGGTCCATGGGGAAATTATC
GGAACATTTTATTCGTCTTCGTAAAGATATAAAAAATAGGACTTTTTTGA
AACAATCACATTATAGCACTCACTTGTATGTGTGTTGTTGTGAGTGTGGT
AAAATGGAAGCCTTAAGTCAAGAAGTTGAAAGCACTGCATCATCGAGCAA
TGGCAAAGGAGACGAAGAAAAGGAATTATTTTCCGTTAATGAACTCAGGT
CAGTTCCTTTGAAAAAGATTCTGCAGTCCTGTGTTGTCGAGCATGTTGCT
GCTTTTTATCAAGTGGCTGCAGTCAGAGTGCTGATAAAAGATGGTGAACT
ATGGAAGGTGCGTCAAATGTTTGAGGAAAAGTTGAGGTCAGATGGGCATA
TTGTTGGTTTTTTTTCATGCCCTACAGCTTTGGAGCAGAAGAAAAATGGT
CAAAAACTCCGCCTACCCGGACTTTCATTTTGGGTCATGTTTGATTGGCC
TGAATACGCGCTAAGCTCATTTGAAAACCTGCTGACCAAATTGTTCATGT
CCATTGGTTTGGAACATTTGAGATGTAAAGCAATCAATGGAAGAGGTTTG
TTCTCTGTTTCACTTATTACTGTGTGGCTGATGTATCTTTTTTTGTATTT
CCAGTCTGCATATAAGAAATATCTTAATTGAATGAATGGCTTCGAGCTTT
AGGGTTTTTGTTATGAATCTTTCGCTCCCCTAGGCAACAAGATTTGTATT
TTCTTATAATTTCTTCCACAGCTAAGACCACCGTTTTGGAGAAATGTCTC
GCTTCATTGTGCATCACTCTCAAGAATCACGCCAACGATAGTCTTCTTCA
CTTTATGACGAAAAGCCAAATCCGCTGTTTAAAAGAAGAAGCCGCCAAAG
AAAATGTTGATCTTGAAACTGTTGTGCTGACCGAAGGCACATACCACTCG
AGCCAGCATCTAGCAACACTATTTCTTTCAAAACGAATGAACCTGAAATG
TGCCGAAGAGCTGAAGGCTGCAAAAATCAACTTGCAGCAGTACCTCCAGC
TGAAAATTGTGGACGAAAGTGGTAAGTGCGCATATGATTTCTGATTAAGA
TTCCTGTGAGAATGGTCTGAAAACTACTTTCACATTTATGATACAAAATT
ATTTGCAGAGTCCTTATTCTTACGGTACTTTATTTTAGGAGACACAGTCA
TCCCGCGGATGAAACCTTCAAACAAGTTGAATCAAGCTGTAGATATTGTG
CGTCGGTACATGGAGAAATTCAAATATGGCTTGTACGACGGCTCCGTTTA
TAAAAAGCCACGCGTGGCCAAGTTCACCTACGTTTATTGTTCAGACGTCC
ATTCATTTATCCATCATATATTGGGTAATTCTGAAGTCGCAGATGTCATT
GTATCGTACGTCACGCCCATCGTTTCCTTGCTTTCTGTAAAAGCATGTCG
GATGATCGACCCCATAGAAATTGATTTTAATTACATCGAAGTCAAACCAC
TTGGGACATGCTTTAACATAGAAGGAAAACGCTTTGAGGTTGATCCTGCT
GGTCTGAAAGGTAAATTTTGGCAATTTTCAAATATGTGACTTTCTCATAG
GTTTCAAGTTATAAAATGAGTTTTACCAGGTCTCTAAAGAAAATGTCCAT
AGTCGCGATTTTCGTTGCACTTCTTTGTAACCTTTTTAATATTCCTTTCG
TCTTTACAGGCTCACCTAGAGCGTACGTGGACTACAATTATACGGGTGAA
GTGCCGTGCCCTGAACCTTTTGTCAATGGCATTCGTAATTCGTTCCCCGA
TCCAAAAGAAAGACTGCTGTTTCTTCGCAAGTACTATCAGCTTTTGCTTC
ATGGAAAGTTTCCACAAAAAGAAAAGAAATTGTGTCTTGTTGGGAAATCC
GACAGTGGAAAGACCAGTTGGTTTGGTGCCTTTCAAGGTGAGTTTTTTAT
TCAGTATCGGAATTTGGCCTTTTGTGTTGCATTTTCTACTGTGGTTTTGA
GTGCAAAAACATCGAAGAGGCAAAAAAGACAAGGATAAATTGATTTATAT
TTTTCTAGGCATCATCCCAAGTCAGTTAATCGCCGGTGTAATGAATGACG
GCAAATTCTCGGCATCACTCATCACAGCACGTACTCAGATAGTCATGATG
GACGAGTGGACGCCCGATAGCTTGGCATGTGAAGACGCAAAAAGAGTCTT
ACAAGGTAAATATACAAGTTTTACATTGTTAGAAGAATGAATATGGTGCG
AGTCTATCTGAATGATATCTGCATTTTTGACATTTCATTTAGTTTGAGCA
CTTTCATTTTCTTTACCCTGACGAGTTTTTGGAAGTTGAGATATGTAGCG
TATTCACCTTTGTATACTCTTCAGTTTTCTTGGAGTAGTTTTTAACACGT
TCTTTCTTTATTTCTTTTAACCAGGCGGATTAATTTTCGTCCCACAGAAG
CATAAGGGTGCCTCAAGAGTGAAATACAACTCGGGATTCTACATTGCAAC
AAACAATTACCCTGATTTTGGAAACGACAAGGACAACAACGCAATCAAAA
ATCGTTTGGAAATCTTTAAGACGAAGTCTCTGACAAAGAAAGACCCACGG
ATTTCTCGTAAGTGATTGCTTTACATGCATAAGATATATACGAGTCTAGA
AACGGATTTTCAATGCAAAAACTCTGCTATTATTTTGTACAAAATATGCC
TGGCATATGTCAAAAAGGAAAATCTTCATAATTGAAACTTATTTTTATGT
CGTAATTACTTGATTTCTTTTCGCATTAACCAAATCAATCACATTGGGAA
TTGAATGTCTTTTGATCAAACAAGGCATTTTCAACTTTTTGTAATCTATA
TATTGAATGACTTTTCCGGAGACATAGTGTAGCATCATGTTTTCACTTTA
CCAGGTTGGCTCCGTGTCAATTGCATGCTCGTTTTCCACTACGTTGCTCA
CATTTTGAGGAACGAACCACTTTTCGATACAAGCATGGAAGACGACAGTG
ACGTATCAGATGGCGAAGACGGAAACTCTCTAGACGTCAACACCAGTGGC
CGTGGAGCCATTTACAATGACTTCGACAATGATCCTCAGGCGGCTCTATT
CGAAGAAGACGTCGACGAATTTTGTTTTTCACAAACATCAAATCTACGTC
CGAGCAACAGTAACGATAGCAGCGCGTCCGTACAAGAAGCTGTAGACCAC
GCTGTTATGTCTGAAGACAGAGCCGTTGGAGTCAACTACAACCACTTGAG
TTGGGAGTCAGAGCTTTTTGACAACACGTCTGACCACTGCGATAACGAAT
ATTGTGAGAAGGTGTTCGAGTTGGTGCAAAACGTTGATAACTGCTGGGAT
AAACTTGGTGTGAGTCCGGAGGCTGTAGCAATGTTCAAACGTCGTCATAG
GACCAAGTGGGACCTGCCTGAAACCGTCTATGACGCCTGGCTTGTGAAAC
ATGGACTCGAAAGACCGTTTTTCGACTACCACCTGTTCTTTGACTTTCTC
TATCCAGAGTTGGCAGACATGCTAATAAAAAATCTGACACAAAGCCAACA
GACCCACAACGAAAACGACGAAACAATACCACCCTACAGGTCACAGTCGT
CGGTATCCGTCGGGGAGAACCAAAGCCAAGTAGCTCGCCCAAGCCAAGGA
GTTCGCACAAGCCAAGAAGTTCGCACAACACAAGAAGTTCGCCCAACCCA
AGAAGTTCGCCCAACCCAAGTAGTTCGCCCAACCCAAGAAGCTCTCCCAA
CCCAAGAAGCTCTCCCAAGCCAAGAAGCTCTCCCAACCCAAGAAGCTCTC
CCAAGCCAAGAAGCTCTCCCAACCCAAGAAGCTCTCCCAAGCCAAGAAGC
TCACCCAAGCCAAGAAGTTCCCCAAGAAGCCGATGATCACATACCATCGT
ATCAACCGCAATCATCAAAATCCAGCTCAAGCTCTTCAGAGGACTCCGAA
ATTGAAAATAGCCCCCTTCGCAAGAAGAGAAAGATGAGAACAGTCGTTTC
TGAAACTGAGGACGAGGAGACAACGATTACCGAGGCAGAGAAACTAAATT
TCCTAACGCGCGTTCTGAATAGTACTCCAGAAAAAAGACAATCGACAACT
TGAGCGGAACACAACAATATTGCCTGCTTTTAGAATTGTTTTACTTTTTT
AACTCGTAGAATTAGATTTATTGCAAATTGTATACCTAAAATATCCAAAG
ATCGTGTTTGAATCTGACTTTATTTAACTTTAAACAAGTTATTCTCTCGA
TAATTATTTTCAAGTCTCTCTCTTTTTTTTTTAAATAATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015693XLOC_015693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027787-exon-sc0000645-1575043694:186981..187625TCONS_00027787-exon-sc0000645-1575043694:186981..187625Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1575043694:185639..185866TCONS_00027787-exon-sc0000645-1575043694:185639..185866Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1575043694:185371..185517TCONS_00027787-exon-sc0000645-1575043694:185371..185517Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1575043694:184969..185151TCONS_00027787-exon-sc0000645-1575043694:184969..185151Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1575043694:183284..184671TCONS_00027787-exon-sc0000645-1575043694:183284..184671Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1510915933:186981..187625TCONS_00027787-exon-sc0000645-1510915933:186981..187625Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1510915933:185639..185866TCONS_00027787-exon-sc0000645-1510915933:185639..185866Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1510915933:185371..185517TCONS_00027787-exon-sc0000645-1510915933:185371..185517Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1510915933:184969..185151TCONS_00027787-exon-sc0000645-1510915933:184969..185151Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1510915933:183284..184671TCONS_00027787-exon-sc0000645-1510915933:183284..184671Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1491911889:186981..187625TCONS_00027787-exon-sc0000645-1491911889:186981..187625Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1491911889:185639..185866TCONS_00027787-exon-sc0000645-1491911889:185639..185866Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1491911889:185371..185517TCONS_00027787-exon-sc0000645-1491911889:185371..185517Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1491911889:184969..185151TCONS_00027787-exon-sc0000645-1491911889:184969..185151Clytia hemisphaericaexon
TCONS_00027787-exon-sc0000645-1491911889:183284..184671TCONS_00027787-exon-sc0000645-1491911889:183284..184671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000645supercontigsc0000645:183284..187625 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148143	0.150947	0	0.0300511	0	0	0	0.0848321	0	0.082035	0.0123951	0.0216987	0	0.422872	0	0.638727	0	0	0	0.21553	0.0720023	0.0632164	0.50012	0.331862	0	0.268614	0.172682	0.196162	0.474979	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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