TCONS_00027788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027788
Unique NameTCONS_00027788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027788 ID=TCONS_00027788|Name=TCONS_00027788|organism=Clytia hemisphaerica|type=transcript|length=492bp
GTTTAGTAAATCGCTGGTGACTGTTGCTTCGTAAACGATACTTTTTACCA
GGCAGTTCTGCTGTATGGGACATAGCTGTCTCTGTGTACAGTTACAGGTC
TGGTTTTCGTTTGTGTTTTCGTTGGTAgacaaaacatttttgttgTGCAT
GTTGATTATCGATTTCATATTTGGCATACAACTGTAGCTGACCTTTATAC
TGTTCTTTTTAAAGATCTTATTGAATTTGTGACCTCTGGGGAAGTGCTTA
TTGACAAGATTCAGGAATTGTCGACCGATATCTGTTGCAACGTTGTTATT
GAACAGTGGATTGAACCATATGAtgtttctttttctgtttttacgTCGAC
GATTGTTGTTTTGTTTAGGCGTGTACTCGAATTTATGGTTGTGCCTGAAT
CGTTTCAGGGCGTCTTCGTAATACGGGGCGGTTGCATTGAATATATCTTC
GTTTGAAGATAAATTTGATAGCCTGTTCTGGATAGACAGTGG
Run BLAST on NCBI

protein sequence of TCONS_00027788-protein

>TCONS_00027788-protein ID=TCONS_00027788-protein|Name=TCONS_00027788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
PLSIQNRLSNLSSNEDIFNATAPYYEDALKRFRHNHKFEYTPKQNNNRRR
KNRKRNIIWFNPLFNNNVATDIGRQFLNLVNKHFPRGHKFNKIFKKNSIK
VSYSCMPNMKSIINMHNKNVLSTNENTNENQTCNCTQRQLCPIQQNCLVK
SIVYEATVTSDLLN
Run BLAST on NCBI

transcript from alignment at sc0000645:23322..23813

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027788 ID=TCONS_00027788|Name=TCONS_00027788|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0000645:23322..23813 (Clytia hemisphaerica)
CCACTGTCTATCCAGAACAGGCTATCAAATTTATCTTCAAACGAAGATAT
ATTCAATGCAACCGCCCCGTATTACGAAGACGCCCTGAAACGATTCAGGC
ACAACCATAAATTCGAGTACACGCCTAAACAAAACAACAATCGTCGAcgt
aaaaacagaaaaagaaacaTCATATGGTTCAATCCACTGTTCAATAACAA
CGTTGCAACAGATATCGGTCGACAATTCCTGAATCTTGTCAATAAGCACT
TCCCCAGAGGTCACAAATTCAATAAGATCTTTAAAAAGAACAGTATAAAG
GTCAGCTACAGTTGTATGCCAAATATGAAATCGATAATCAACATGCAcaa
caaaaatgttttgtcTACCAACGAAAACACAAACGAAAACCAGACCTGTA
ACTGTACACAGAGACAGCTATGTCCCATACAGCAGAACTGCCTGGTAAAA
AGTATCGTTTACGAAGCAACAGTCACCAGCGATTTACTAAAC

Coding sequence (CDS) from alignment at sc0000645:23322..23813

>TCONS_00027788 ID=TCONS_00027788|Name=TCONS_00027788|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000645:23322..23813 (Clytia hemisphaerica)
CCACTGTCTATCCAGAACAGGCTATCAAATTTATCTTCAAACGAAGATAT
ATTCAATGCAACCGCCCCGTATTACGAAGACGCCCTGAAACGATTCAGGC
ACAACCATAAATTCGAGTACACGCCTAAACAAAACAACAATCGTCGAcgt
aaaaacagaaaaagaaacaTCATATGGTTCAATCCACTGTTCAATAACAA
CGTTGCAACAGATATCGGTCGACAATTCCTGAATCTTGTCAATAAGCACT
TCCCCAGAGGTCACAAATTCAATAAGATCTTTAAAAAGAACAGTATAAAG
GTCAGCTACAGTTGTATGCCAAATATGAAATCGATAATCAACATGCAcaa
caaaaatgttttgtcTACCAACGAAAACACAAACGAAAACCAGACCTGTA
ACTGTACACAGAGACAGCTATGTCCCATACAGCAGAACTGCCTGGTAAAA
AGTATCGTTTACGAAGCAACAGTCACCAGCGATTTACTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015694XLOC_015694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027788-exon-sc0000645-1491911889:23322..23813TCONS_00027788-exon-sc0000645-1491911889:23322..23813Clytia hemisphaericaexon
TCONS_00027788-exon-sc0000645-1510915933:23322..23813TCONS_00027788-exon-sc0000645-1510915933:23322..23813Clytia hemisphaericaexon
TCONS_00027788-exon-sc0000645-1575043694:23322..23813TCONS_00027788-exon-sc0000645-1575043694:23322..23813Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027788-proteinTCONS_00027788-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000645supercontigsc0000645:23322..23813 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88045	1.46698	3.40662	2.77737	1.35247	0.534371	0.644696	0.603557	0.633846	0.39256	0.762057	0.333964	0.750375	0.432929	0.498297	0.229178	0	1.25397	0.932846	0.557803	0.727249	1.06418	0.718694	0.130679	1.34597	0.960995	0.171898	0.550361	0.278286	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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