TCONS_00027794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027794
Unique NameTCONS_00027794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027794 ID=TCONS_00027794|Name=TCONS_00027794|organism=Clytia hemisphaerica|type=transcript|length=331bp
ACAATGGTTTGCGTATACATCAGCCACTGGCAATGAAACAGTAGATGTCT
TGGTTGACCGATCAATTTCCAATCTCCAGAAAATCAAACTAAAGATGAAG
TTACTTTCTCTGGTCAAAAAGATGTATGGCGATTGTTTGCCATGTAGATC
GATCCCTAATAGCAAAAGCTGTGATTGCACAGCCATCAAACCGATGAAAG
ATTGTCTGGAGTTTTTGCAGAACGGCTACACCAAGAATGGAATCTACAAA
GTAACACAGAAAGAAAACGTCTACTGCGATCAAACCACTCAAAATGGTGG
CTGGACAATATTCTTAAGGAGACAAGATGGA
Run BLAST on NCBI

protein sequence of TCONS_00027794-protein

>TCONS_00027794-protein ID=TCONS_00027794-protein|Name=TCONS_00027794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
QWFAYTSATGNETVDVLVDRSISNLQKIKLKMKLLSLVKKMYGDCLPCRS
IPNSKSCDCTAIKPMKDCLEFLQNGYTKNGIYKVTQKENVYCDQTTQNGG
WTIFLRRQDG
Run BLAST on NCBI

transcript from alignment at sc0000645:51328..51658

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027794 ID=TCONS_00027794|Name=TCONS_00027794|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0000645:51328..51658 (Clytia hemisphaerica)
TCCATCTTGTCTCCTTAAGAATATTGTCCAGCCACCATTTTGAGTGGTTT
GATCGCAGTAGACGTTTTCTTTCTGTGTTACTTTGTAGATTCCATTCTTG
GTGTAGCCGTTCTGCAAAAACTCCAGACAATCTTTCATCGGTTTGATGGC
TGTGCAATCACAGCTTTTGCTATTAGGGATCGATCTACATGGCAAACAAT
CGCCATACATCTTTTTGACCAGAGAAAGTAACTTCATCTTTAGTTTGATT
TTCTGGAGATTGGAAATTGATCGGTCAACCAAGACATCTACTGTTTCATT
GCCAGTGGCTGATGTATACGCAAACCATTGT

Coding sequence (CDS) from alignment at sc0000645:51328..51658

>TCONS_00027794 ID=TCONS_00027794|Name=TCONS_00027794|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000645:51328..51658 (Clytia hemisphaerica)
TCCATCTTGTCTCCTTAAGAATATTGTCCAGCCACCATTTTGAGTGGTTT
GATCGCAGTAGACGTTTTCTTTCTGTGTTACTTTGTAGATTCCATTCTTG
GTGTAGCCGTTCTGCAAAAACTCCAGACAATCTTTCATCGGTTTGATGGC
TGTGCAATCACAGCTTTTGCTATTAGGGATCGATCTACATGGCAAACAAT
CGCCATACATCTTTTTGACCAGAGAAAGTAACTTCATCTTTAGTTTGATT
TTCTGGAGATTGGAAATTGATCGGTCAACCAAGACATCTACTGTTTCATT
GCCAGTGGCTGATGTATACGCAAACCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015700XLOC_015700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027794-exon-sc0000645-1491911889:51328..51658TCONS_00027794-exon-sc0000645-1491911889:51328..51658Clytia hemisphaericaexon
TCONS_00027794-exon-sc0000645-1510915933:51328..51658TCONS_00027794-exon-sc0000645-1510915933:51328..51658Clytia hemisphaericaexon
TCONS_00027794-exon-sc0000645-1575043694:51328..51658TCONS_00027794-exon-sc0000645-1575043694:51328..51658Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027794-proteinTCONS_00027794-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000645supercontigsc0000645:51328..51658 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.348006	0.322121	0	0	0	0	1.87557	0.82316	0.84179	2.72449	41.7123	32.7268	537.58	686.924	83.5363	68.3581	71.1209	59.3405	40.4165	35.2683	337.259	253.784	208.282	233.468	15.4885	20.3794	1364.22	1934.06
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014716Fibrinogen_a/b/g_C_1
IPR002181Fibrinogen_a/b/g_C_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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