TCONS_00027800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027800
Unique NameTCONS_00027800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027800 ID=TCONS_00027800|Name=TCONS_00027800|organism=Clytia hemisphaerica|type=transcript|length=791bp
CTAAGAAATCAAGTTTTTAGCTTTTGCTCTTGTCATGAGAGTAGCGTTTG
TTCGTGAAGGGTGAAAACAAAATTCTGGATCTTTAAGAATGTGCGTCCAT
TTGCCTTGGCCATACTTCTTCAGTCCTTTAAGAATAAAATCGTCTTCTTC
TGCTGTGAAAGAGCTTTTTGGCTTTCGTTCTGTTGGTGAGCGTTGCGTGC
TTTTTGGAGGTTTGGCTGTTNTGCGCGTCCATTTGCCTTGGCCATACTTC
CTCAGTCCTTTAAGAATAAAATCGTCTTCTTCTGCTGTGAAAGAGCTTTT
TGGCTTTCGTTCTGTTGGTGAGCGTTGCGTGCTTTTTGGAGGTTTGGCTG
TTGATGTAGGTTTCTTAGGTTCTTGAGATTCGATGTTTGGTGATTCGTCG
TCTGGTTGAGAATTATCGATAGACATGTCACTTGTGTTTTCAACGCTTAC
CTTCCCATTGTCCTGATCGTCGGTAATGGTAGAGCTAGGACTGTTGTTGA
TCAGTATTTTCATGCATTCGCTGGCCTTCCGTGCAACGTCTcgagatttt
tgtttttgatagtgGACTTTCGCAACGTTTGAAGTGTGTTTTTGGTCCAA
GCTGACGATTGCCTGTTCTTCTGTAGTCAAACGTTCTGCGCTCTCAGTTT
CAATGATTTGTCGATATCTCGTTGGATTCACATATTTCCAATCGCTTGAT
AGACCATTCTGCCAAAGATATCACCAAGATTCTTCAGCTGTGTACCATTT
CCGTTCACTAAAAGATACTGACAAGATGGTTTGAAAGTTNN
Run BLAST on NCBI

protein sequence of TCONS_00027800-protein

>TCONS_00027800-protein ID=TCONS_00027800-protein|Name=TCONS_00027800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MKILINNSPSSTITDDQDNGKVSVENTSDMSIDNSQPDDESPNIESQEPK
KPTSTAKPPKSTQRSPTERKPKSSFTAEEDDFILKGLRKYGQGKWTRXTA
KPPKSTQRSPTERKPKSSFTAEEDDFILKGLKKYGQGKWTHILKDPEFCF
HPSRTNATLMTRAKAKNLIS
Run BLAST on NCBI

transcript from alignment at sc0000645:194807..195597

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027800 ID=TCONS_00027800|Name=TCONS_00027800|organism=Clytia hemisphaerica|type=transcript|length=791bp|location=Sequence derived from alignment at sc0000645:194807..195597 (Clytia hemisphaerica)
NNAACTTTCAAACCATCTTGTCAGTATCTTTTAGTGAACGGAAATGGTAC
ACAGCTGAAGAATCTTGGTGATATCTTTGGCAGAATGGTCTATCAAGCGA
TTGGAAATATGTGAATCCAACGAGATATCGACAAATCATTGAAACTGAGA
GCGCAGAACGTTTGACTACAGAAGAACAGGCAATCGTCAGCTTGGACCAA
AAACACACTTCAAACGTTGCGAAAGTCcactatcaaaaacaaaaatctcg
AGACGTTGCACGGAAGGCCAGCGAATGCATGAAAATACTGATCAACAACA
GTCCTAGCTCTACCATTACCGACGATCAGGACAATGGGAAGGTAAGCGTT
GAAAACACAAGTGACATGTCTATCGATAATTCTCAACCAGACGACGAATC
ACCAAACATCGAATCTCAAGAACCTAAGAAACCTACATCAACAGCCAAAC
CTCCAAAAAGCACGCAACGCTCACCAACAGAACGAAAGCCAAAAAGCTCT
TTCACAGCAGAAGAAGACGATTTTATTCTTAAAGGACTGAGGAAGTATGG
CCAAGGCAAATGGACGCGCANAACAGCCAAACCTCCAAAAAGCACGCAAC
GCTCACCAACAGAACGAAAGCCAAAAAGCTCTTTCACAGCAGAAGAAGAC
GATTTTATTCTTAAAGGACTGAAGAAGTATGGCCAAGGCAAATGGACGCA
CATTCTTAAAGATCCAGAATTTTGTTTTCACCCTTCACGAACAAACGCTA
CTCTCATGACAAGAGCAAAAGCTAAAAACTTGATTTCTTAG

Coding sequence (CDS) from alignment at sc0000645:194807..195597

>TCONS_00027800 ID=TCONS_00027800|Name=TCONS_00027800|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000645:194807..195597 (Clytia hemisphaerica)
ATGAAAATACTGATCAACAACAGTCCTAGCTCTACCATTACCGACGATCA
GGACAATGGGAAGGTAAGCGTTGAAAACACAAGTGACATGTCTATCGATA
ATTCTCAACCAGACGACGAATCACCAAACATCGAATCTCAAGAACCTAAG
AAACCTACATCAACAGCCAAACCTCCAAAAAGCACGCAACGCTCACCAAC
AGAACGAAAGCCAAAAAGCTCTTTCACAGCAGAAGAAGACGATTTTATTC
TTAAAGGACTGAGGAAGTATGGCCAAGGCAAATGGACGCGCANAACAGCC
AAACCTCCAAAAAGCACGCAACGCTCACCAACAGAACGAAAGCCAAAAAG
CTCTTTCACAGCAGAAGAAGACGATTTTATTCTTAAAGGACTGAAGAAGT
ATGGCCAAGGCAAATGGACGCACATTCTTAAAGATCCAGAATTTTGTTTT
CACCCTTCACGAACAAACGCTACTCTCATGACAAGAGCAAAAGCTAAAAA
CTTGATTTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015706XLOC_015706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027800-exon-sc0000645-1491911889:194807..195597TCONS_00027800-exon-sc0000645-1491911889:194807..195597Clytia hemisphaericaexon
TCONS_00027800-exon-sc0000645-1510915933:194807..195597TCONS_00027800-exon-sc0000645-1510915933:194807..195597Clytia hemisphaericaexon
TCONS_00027800-exon-sc0000645-1575043694:194807..195597TCONS_00027800-exon-sc0000645-1575043694:194807..195597Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027800-proteinTCONS_00027800-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000645supercontigsc0000645:194807..195597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.518502	0.853231	0.621181	0.675254	1.97294	1.68896	8.94634	11.5925	1.48812	4.12729	1.97762	1.90328	0.367244	0.294719	0.460088	2.43971	1.37284	1.50855	0.695695	0.994032	0.86364	1.12117	0.559149	0.19063	0.196345	0.58411	0.668688	0.0892052	1.67678	0.335051
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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