TCONS_00027852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027852
Unique NameTCONS_00027852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027852 ID=TCONS_00027852|Name=TCONS_00027852|organism=Clytia hemisphaerica|type=transcript|length=659bp
aattaattaAAAGGTGCTACTCATTAAAAGACACCGGTATAGGACCATTG
CCGGAAGGTCAGAATTGCGAATGAAACCATATCTCTTTGCTTTCAGCACT
CAGAGGGGAAAATAATCTCTCAATCAGTTTCAATCTCTATAAAGAAttag
aaggatgtcgaaataaGATGAGGGATGTTGGCCAACTTGCAGTTATCAAG
TCATATTGTTCCAATTAATTTGGCTTTTGCATGAGCGTCCACCTCTATGC
TGGCTTGGATTGAATCATTACATTAATATGTCGAATATGTGTAATCTAAG
TACcctgagattgggtaacttgtgCATCAGTTGAAGGAAACTTGCATGGC
CATCAAATGGCTGACAGCAGcaaaagcaaaatttcaaaacaaaaaaatgt
aacaTTGCAAGAACTATGCAGGTCCACTTACAGCTCTgctctaccatttt
agaatctcaAATTTGTTGTGCTAGTATTTTTGGCCTGTTTTTGGCCGACA
GAATCACGGGTAACTAAATGGTTAGATTATAAAAAATCACCCAGGATCAA
AAATTTAAGATCCACCATGGTGggaattgagaaatttttgacaacttttt
ttgaCATCAAACTAATCCAAACTGTTCCTGCTTTTACTAACAGAACCCTT
TATCTTTAA
Run BLAST on NCBI

transcript from alignment at sc0000647:71916..72574

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027852 ID=TCONS_00027852|Name=TCONS_00027852|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at sc0000647:71916..72574 (Clytia hemisphaerica)
TTAAAGATAAAGGGTTCTGTTAGTAAAAGCAGGAACAGTTTGGATTAGTT
TGATGtcaaaaaaagttgtcaaaaatttctcaattccCACCATGGTGGAT
CTTAAATTTTTGATCCTGGGTGATTTTTTATAATCTAACCATTTAGTTAC
CCGTGATTCTGTCGGCCAAAAACAGGCCAAAAATACTAGCACAACAAATT
tgagattctaaaatggtagagcAGAGCTGTAAGTGGACCTGCATAGTTCT
TGCAAtgttacatttttttgttttgaaattttgcttttgCTGCTGTCAGC
CATTTGATGGCCATGCAAGTTTCCTTCAACTGATGcacaagttacccaat
ctcaggGTACTTAGATTACACATATTCGACATATTAATGTAATGATTCAA
TCCAAGCCAGCATAGAGGTGGACGCTCATGCAAAAGCCAAATTAATTGGA
ACAATATGACTTGATAACTGCAAGTTGGCCAACATCCCTCATCttatttc
gacatccttctaaTTCTTTATAGAGATTGAAACTGATTGAGAGATTATTT
TCCCCTCTGAGTGCTGAAAGCAAAGAGATATGGTTTCATTCGCAATTCTG
ACCTTCCGGCAATGGTCCTATACCGGTGTCTTTTAATGAGTAGCACCTTT
taattaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015741XLOC_015741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027852-exon-sc0000647-1491911889:71916..72574TCONS_00027852-exon-sc0000647-1491911889:71916..72574Clytia hemisphaericaexon
TCONS_00027852-exon-sc0000647-1510915933:71916..72574TCONS_00027852-exon-sc0000647-1510915933:71916..72574Clytia hemisphaericaexon
TCONS_00027852-exon-sc0000647-1575043694:71916..72574TCONS_00027852-exon-sc0000647-1575043694:71916..72574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:71916..72574 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02491	1.07633	0.714128	1.83399	0.106319	0.084015	0.101361	0	0	0	0	0.210026	0	0	0.0447676	0.0480425	0.295922	0.121324	0.0838081	0	0.152453	0	0.180791	0.0821828	0.423232	0.30218	0	0.115372	0.175011	0.0891544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top