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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027855 ID=TCONS_00027855|Name=TCONS_00027855|organism=Clytia hemisphaerica|type=transcript|length=1769bp
CAACTGTGTAATTGCGCTTACAGCCTTGAGAGTCAAGCGCGCAATTAAGA
GGATTTCTCAGACTGAATTTGATGCTGTTGCTATATATATTACTTGTCTC
CTTTTCCATACGGTTAACTACCTACTGTGAggggtcctaaatctgacagc
cctgcctaaatcagATGggatctttcaaagatacaaactaaaataaaaac
aaacctttcactGTGACACCATGAGGATACCAAAGTATCAACTAAACTGG
aggatttgatacactgaaccaattgaaccaaataacaaatTGCTTTTTCT
TATATACAAAACAtacaattttttattacaaaattgttaacgttcaaaac
acgagcaacagattcagaataataatggaggtaattattttacaactcac
actttatGATCACATTAATAATTGaaatcttgacattatagtcatcttgt
tagatgttttctTTCGAGAGTtattgcaatagtttattgttcaacttgga
aagggaatattatattttcatagcagttatttggggggtcggatttaggc
agggctgctCTCGGATTTAGGACAACTCATGATATAATTAGGCACAGTTG
CTATATCTTCCTACGCTGGAGTGCTATGCTTTACgtaaaaaggcaaaaat
attGAAGTGAAGATATTTAGGCTTGCAATTTTAAGTTACGGCTTGAAAAT
GATAGTTTCAACCTGAGGTACTGAGATTTCAAAACGTCGTATCTTGGCTT
CAgaataaattgtaaaaatcgaaaaactttAGAAAAGGGATATGTATTTT
TAATTGATCAGTGTGGAGGCAGACCTGATCAACGTTATTATAGATATTAT
AAAATTAAGTTACCGGTTTTCATGGGTTTTCCATATGAAGACTACCCGGA
ACTGAACATAAAGAAAcagaagaaaaactaaaaatccACTCCCTGGAAAA
TATCTAGATCGGTTAGGGAAGCCATCCAGTATTCTGCCATCCTATCaggc
cagcaaaaactaaatgacacttgtaaacttaagtttcttaccattttcca
tcgaaaacaactgAAAACATTACTACTTCCTAAAGCCTGAGAGCAATGCA
AATGATCTTCCTTGATGAGGGcacccttttggatctattgttaaatcatt
taaaatggtggacaggGTTTGCGAAATGATAAAGGCACCCGCTGCTTTGA
GGGTGGTAACGAcgaaacgcccaatatgatcagcCAACAGAAGTATGAAT
GCACTCTACCGTGGCGAAAGCGCAAACAGCATTTCACAACTATAAGAAta
tcttttgtgcttaattctatttaactttgagagcttcattgaagatgaag
aaatagaaagataaaaaatgcgctggctaattttgtttaaataggtgtgt
tctatcattgttgaaagttggagaaattttttagagccaattaaaggcac
agtctccttatacttactatgtttgctatacTGTCTAGGCAAAAAACGGT
TTAAAAAGACGCAAACGTTATTTTTTTGTGAGTgcggttatgattttttt
tattgctgccgcgtacaggaactcgccaaatgttcctaactgtagATTGT
TTTGGCGAAGGGAAGTCAGGTATTAGTTTACTGTTACCCTTCCGCATGTG
TTTGAGCTACCGTAAGTTAGTCTAATAATGTCGACAttcctcttctaatt
ttgacacccttctttagggATAGGAATTATAGGAAGGTCGAaatcgctga
tggaaactatttttctttc Run BLAST on NCBI transcript from alignment at sc0000647:123620..125388 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027855 ID=TCONS_00027855|Name=TCONS_00027855|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at sc0000647:123620..125388 (Clytia hemisphaerica)
gaaagaaaaatagtttccatcagcgattTCGACCTTCCTATAATTCCTAT
ccctaaagaagggtgtcaaaattagaagaggaaTGTCGACATTATTAGAC
TAACTTACGGTAGCTCAAACACATGCGGAAGGGTAACAGTAAACTAATAC
CTGACTTCCCTTCGCCAAAACAATctacagttaggaacatttggcgagtt
cctgtacgcggcagcaataaaaaaaatcataaccgcACTCACAAAAAAAT
AACGTTTGCGTCTTTTTAAACCGTTTTTTGCCTAGACAgtatagcaaaca
tagtaagtataaggagactgtgcctttaattggctctaaaaaatttctcc
aactttcaacaatgatagaacacacctatttaaacaaaattagccagcgc
attttttatctttctatttcttcatcttcaatgaagctctcaaagttaaa
tagaattaagcacaaaagataTTCTTATAGTTGTGAAATGCTGTTTGCGC
TTTCGCCACGGTAGAGTGCATTCATACTTCTGTTGgctgatcatattggg
cgtttcgTCGTTACCACCCTCAAAGCAGCGGGTGCCTTTATCATTTCGCA
AACcctgtccaccattttaaatgatttaacaatagatccaaaagggtgCC
CTCATCAAGGAAGATCATTTGCATTGCTCTCAGGCTTTAGGAAGTAGTAA
TGTTTTcagttgttttcgatggaaaatggtaagaaacttaagtttacaag
tgtcatttagtttttgctggcctGATAGGATGGCAGAATACTGGATGGCT
TCCCTAACCGATCTAGATATTTTCCAGGGAGTggatttttagtttttctt
ctgTTTCTTTATGTTCAGTTCCGGGTAGTCTTCATATGGAAAACCCATGA
AAACCGGTAACTTAATTTTATAATATCTATAATAACGTTGATCAGGTCTG
CCTCCACACTGATCAATTAAAAATACATATCCCTTTTCTaaagtttttcg
atttttacaatttattcTGAAGCCAAGATACGACGTTTTGAAATCTCAGT
ACCTCAGGTTGAAACTATCATTTTCAAGCCGTAACTTAAAATTGCAAGCC
TAAATATCTTCACTTCaatatttttgcctttttacGTAAAGCATAGCACT
CCAGCGTAGGAAGATATAGCAACTGTGCCTAATTATATCATGAGTTGTCC
TAAATCCGAGagcagccctgcctaaatccgaccccccaaataactgctat
gaaaatataatattccctttccaagttgaacaataaactattgcaataAC
TCTCGAAagaaaacatctaacaagatgactataatgtcaagatttCAATT
ATTAATGTGATCataaagtgtgagttgtaaaataattacctccattatta
ttctgaatctgttgctcgtgttttgaacgttaacaattttgtaataaaaa
attgtaTGTTTTGTATATAAGAAAAAGCAatttgttatttggttcaattg
gttcagtgtatcaaatcctCCAGTTTAGTTGATACTTTGGTATCCTCATG
GTGTCACagtgaaaggtttgtttttattttagtttgtatctttgaaagat
ccCATctgatttaggcagggctgtcagatttaggaccccTCACAGTAGGT
AGTTAACCGTATGGAAAAGGAGACAAGTAATATATATAGCAACAGCATCA
AATTCAGTCTGAGAAATCCTCTTAATTGCGCGCTTGACTCTCAAGGCTGT
AAGCGCAATTACACAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027855-exon-sc0000647-1491911889:123620..125388 | TCONS_00027855-exon-sc0000647-1491911889:123620..125388 | Clytia hemisphaerica | exon |
| TCONS_00027855-exon-sc0000647-1510915933:123620..125388 | TCONS_00027855-exon-sc0000647-1510915933:123620..125388 | Clytia hemisphaerica | exon |
| TCONS_00027855-exon-sc0000647-1575043694:123620..125388 | TCONS_00027855-exon-sc0000647-1575043694:123620..125388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000647 | supercontig | sc0000647:123620..125388 . |
Blast
The following BLAST results are available for this feature:
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