TCONS_00027856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027856
Unique NameTCONS_00027856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027856 ID=TCONS_00027856|Name=TCONS_00027856|organism=Clytia hemisphaerica|type=transcript|length=342bp
CCAGAAGACAAGGAAGTAGCAACAATCACAAGTTGCGTCATCCTTGAAAC
CCATCGAATGGCATCTGTCGGCCCACTAAGCCTTCCTCACAAGACAACCG
TCGATACTTCGGTCGGTGGACACACAATCCCCAAGAATACGACAATCTTT
ACAAACCTCTACAGTATGCACTACGACCCTACACACTGGGATGAACCAGA
GAAATTCAAACCAGAACGTTGGTTAAATGCTGATGGAagtttaaagaaag
aaaaggcgACACACTATCTCCCTTTCTCAGCGGGAACTCGTGTTTGTCTC
GCGGAAAAGATGGCCCAATTGCAACTATTCATGATAACAACC
Run BLAST on NCBI

protein sequence of TCONS_00027856-protein

>TCONS_00027856-protein ID=TCONS_00027856-protein|Name=TCONS_00027856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
PEDKEVATITSCVILETHRMASVGPLSLPHKTTVDTSVGGHTIPKNTTIF
TNLYSMHYDPTHWDEPEKFKPERWLNADGSLKKEKATHYLPFSAGTRVCL
AEKMAQLQLFMITT
Run BLAST on NCBI

transcript from alignment at sc0000647:187392..187733

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027856 ID=TCONS_00027856|Name=TCONS_00027856|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at sc0000647:187392..187733 (Clytia hemisphaerica)
GGTTGTTATCATGAATAGTTGCAATTGGGCCATCTTTTCCGCGAGACAAA
CACGAGTTCCCGCTGAGAAAGGGAGATAGTGTGTcgccttttctttcttt
aaactTCCATCAGCATTTAACCAACGTTCTGGTTTGAATTTCTCTGGTTC
ATCCCAGTGTGTAGGGTCGTAGTGCATACTGTAGAGGTTTGTAAAGATTG
TCGTATTCTTGGGGATTGTGTGTCCACCGACCGAAGTATCGACGGTTGTC
TTGTGAGGAAGGCTTAGTGGGCCGACAGATGCCATTCGATGGGTTTCAAG
GATGACGCAACTTGTGATTGTTGCTACTTCCTTGTCTTCTGG

Coding sequence (CDS) from alignment at sc0000647:187392..187733

>TCONS_00027856 ID=TCONS_00027856|Name=TCONS_00027856|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000647:187392..187733 (Clytia hemisphaerica)
GGTTGTTATCATGAATAGTTGCAATTGGGCCATCTTTTCCGCGAGACAAA
CACGAGTTCCCGCTGAGAAAGGGAGATAGTGTGTcgccttttctttcttt
aaactTCCATCAGCATTTAACCAACGTTCTGGTTTGAATTTCTCTGGTTC
ATCCCAGTGTGTAGGGTCGTAGTGCATACTGTAGAGGTTTGTAAAGATTG
TCGTATTCTTGGGGATTGTGTGTCCACCGACCGAAGTATCGACGGTTGTC
TTGTGAGGAAGGCTTAGTGGGCCGACAGATGCCATTCGATGGGTTTCAAG
GATGACGCAACTTGTGATTGTTGCTACTTCCTTGTCTTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015745XLOC_015745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027856-exon-sc0000647-1491911889:187392..187733TCONS_00027856-exon-sc0000647-1491911889:187392..187733Clytia hemisphaericaexon
TCONS_00027856-exon-sc0000647-1510915933:187392..187733TCONS_00027856-exon-sc0000647-1510915933:187392..187733Clytia hemisphaericaexon
TCONS_00027856-exon-sc0000647-1575043694:187392..187733TCONS_00027856-exon-sc0000647-1575043694:187392..187733Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027856-proteinTCONS_00027856-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:187392..187733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.45878	2.4689	3.67896	3.65921	264.229	195.831	43.1525	36.5923	23.5608	30.2169	17.5241	14.4225	29.1346	29.7735	17.3542	17.5455	32.2431	37.0653	13.2453	20.0805	14.7854	18.1262	12.3679	14.364	11.3482	6.90542	26.9568	25.55	22.5153	18.6787
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
IPR002401Cyt_P450_E_grp-I
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00027856 vs. Swiss-Prot (Human)
Match: CP2F1 (Cytochrome P450 2F1 OS=Homo sapiens GN=CYP2F1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.571e-26
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    4 EDKEVATITSCVILETHRMASVGPLSLPHKTTVDTSVGGHTIPKNTTIFTNLYSMHYDPTHWDEPEKFKPERWLNADGSLKKEKATHYLPFSAGTRVCLAEKMAQLQLFMITT 342
            +D+     T  VI E  R A + P++LPH+ T DT+  G  IPK T + T L ++HYDP+ +  P++F PE +L+A+ S KK  A  ++PFSAG R+CL E +A+++LF+  T
Sbjct:  341 KDRAAMPYTDAVIHEVQRFADIIPMNLPHRVTRDTAFRGFLIPKGTDVITLLNTVHYDPSQFLTPQEFNPEHFLDANQSFKKSPA--FMPFSAGRRLCLGESLARMELFLYLT 451
The following BLAST results are available for this feature:
BLAST of TCONS_00027856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP2F11.571e-2642.48Cytochrome P450 2F1 OS=Homo sapiens GN=CYP2F1 PE=1... [more]
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