TCONS_00027859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027859
Unique NameTCONS_00027859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027859 ID=TCONS_00027859|Name=TCONS_00027859|organism=Clytia hemisphaerica|type=transcript|length=532bp
NNtatttaaagtattttatcaGATTTTTGACCCCCTTAAGCAGTTATGCT
AACACTTTGACAATACTAAAGAGTTACATTTGTAAAAACCAtgcatttcc
ttgttttttttatttttttgtgtcaTCTAGAGGGTCGTTCTTCTATTAGA
AACATGAGAAAGTTCTAATATCATTGATaagtcttcttttgttcttttca
aagaaaaacatgtaataactgaaatcaaaccaaaccaaatcttttggttt
tatattaatttagtctctataatattccttaaattttgGCAATAGAAAAA
GACACTCCAAAATCTTTAATTAATGATGTATAATGTTCTAGGGTTGTACC
CTAAgaagaaaaagttatgtccgcaacacagCATTATTATACATGTAacc
ctttctattgaaaaagtTTAGTGACTCTCAAGGAAAAATCACATTTAATG
ATTATGAAAATGTACAACAGTTGATGTCAAGCTCaaatcttaacttttaa
gattagattttaacaaaaaattatatatgatT
Run BLAST on NCBI

transcript from alignment at sc0000647:250752..251283

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027859 ID=TCONS_00027859|Name=TCONS_00027859|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000647:250752..251283 (Clytia hemisphaerica)
AatcatatataattttttgttaaaatctaatcttaaaagttaagatttGA
GCTTGACATCAACTGTTGTACATTTTCATAATCATTAAATGTGATTTTTC
CTTGAGAGTCACTAAactttttcaatagaaagggtTACATGTATAATAAT
GctgtgttgcggacataactttttcttcTTAGGGTACAACCCTAGAACAT
TATACATCATTAATTAAAGATTTTGGAGTGTCTTTTTCTATTGCcaaaat
ttaaggaatattatagagactaaattaatataaaaccaaaagatttggtt
tggtttgatttcagttattacatgtttttctttgaaaagaacaaaagaag
acttATCAATGATATTAGAACTTTCTCATGTTTCTAATAGAAGAACGACC
CTCTAGAtgacacaaaaaaataaaaaaaacaaggaaatgcaTGGTTTTTA
CAAATGTAACTCTTTAGTATTGTCAAAGTGTTAGCATAACTGCTTAAGGG
GGTCAAAAATCtgataaaatactttaaataNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015748XLOC_015748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027859-exon-sc0000647-1491911889:250752..251283TCONS_00027859-exon-sc0000647-1491911889:250752..251283Clytia hemisphaericaexon
TCONS_00027859-exon-sc0000647-1510915933:250752..251283TCONS_00027859-exon-sc0000647-1510915933:250752..251283Clytia hemisphaericaexon
TCONS_00027859-exon-sc0000647-1575043694:250752..251283TCONS_00027859-exon-sc0000647-1575043694:250752..251283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:250752..251283 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52628	3.21329	2.73602	3.77181	2.36997	0.93639	1.55336	1.45423	2.96187	2.40762	2.00305	3.29182	2.11845	2.80693	1.30977	0.87012	1.15437	1.26771	0.700563	1.46618	3.92932	3.41877	1.13344	1.60295	0.707571	0.736738	3.16281	1.44662	3.90118	4.71994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top