TCONS_00027868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027868
Unique NameTCONS_00027868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027868 ID=TCONS_00027868|Name=TCONS_00027868|organism=Clytia hemisphaerica|type=transcript|length=2930bp
ccactttcaaaaattttcaagatttggcTGTTTtcgaaatgttcttaact
tgttgtaATATTCTCTTTAAAAAAGCGTGTGCTAAACACGGAGGAGAGTC
TCTCTTCTCTGATTACaataattaaaactttttaactttCACGACGGAGA
GTGTcgtgatgtttttaaaaatagatgATGTTATTCGCTGTATCTTGAAT
TGATAatccttttgttttaaatgtttgcATTTTGGCCAAACGTACTTAAA
TAAATCACATAGAGTCTGTACGCATTTGACTTTCGGAAGTTCGGCCAAGG
ACATATTGGTTTTATCATAATGTTTTCGTGTTCATTTTGGGCGCGCCGAT
CATTCTTGATAGAAATAGTTCACATTCTTTgcgaaaacaaaagtaaactt
ttcaagcaaagatttttgaaatatttctgtACGTTTCAAACATTTGGAAT
TCTTCTTATAATAAAATATGGTATGttatttcttcattttacaACGGGTA
TAGAACTGTCAATGCGTCCtaaaaaatatgttattttctAAAACCTTTCT
AAAAAAGACATCGGTTCCTTGATTCCTACTTTTTTAGTATATTTAATCGA
AAGACTCTACTTTTTAGAATTTCTACATTGATGTTCATGAATTTTTAATG
CTGTTCACACGATTTCTCTCTCCCTTCCATAGAAAAAAAGTAGCAATTTT
AGTAAATGTACTGTAGATGAATCTTTAACAACCATAAACAAAGTCTAAAA
TCGAACCAAAATCTGATCACAAAACATGGCGGATGATAAATTGAGAGAAC
ATTCAGTTAGAGATCTCAACCAGAATGAAAGAGTATCAGCAAGTACTGAC
CCTGAATCCATGGCTTCTGATGCTGAGGGTGTTTGGAGTCCAGACATAGA
ACAAAGTTTTCAAGAAGCATTAGCAATCTACCCACCATGTGGTAGAAGAA
AAATTATACTGTCAGACGAAGGGAAAATGTACGGACGTAATGAACTTATT
GCACGATATATCAAACTTAGGACGGGCAAAACCAGAAGTCGAAAGCAGGT
TTCAAGCCATATTCAAGTTCTTGCTCGCCGTAAGGCCAGGGACATACAAG
ACTCTCAATCAAAAGACAAGGCACTTCAAGCAATGGCCAACCTAACTTCT
TCACAGATAGTATCTGGAAACAGTCTACATCCATCCAAATTGCTGGAGCC
AGCGGTCAAGAGAGAACTCAATTTGAGCCCACAAAATTATTGGCCATCTC
CTCAAAATGGTGTACCTCCTCCACCTGCACCGCCCATTGGATATCCGTTC
ACAACTGCAAGTGCTTTTTATGCCAGTACCATAACACAAGCTTCAACCAC
TTCCCACGCGCAAGGCATCAATTCCGACAGACATTCTTCCTCTCGTACTT
TAAGTAATCCAACTTCACCAACTATTCATGATGGACCACCGCCACCATTA
CCACACAGTTCCAGTCTGCAACCCAACAACACGACCTCTAGCCCACCATG
GCAGACAAGACATTCCCAAAACCAAATGCCACTTCGCTTACTTGATTTTT
CTGCATATATCGAAATTGACAAAACGGAAAGCTACCACAAGCATGTcttt
gtaaatttgaataactaTCGCATATTTGAAGATCCTGGAATCGAATCAAT
TGATATTCGACAAATTTATGACAAGTTTCCTGAAAAGAAAGGTGGTTTGA
AAGAACTTTACGAAAAGGGACCTCAAAATCTCTTCTTCTTGGTCAAGTTT
TGGGCTGATTTGAATACGAATATATCGGATGATGCAGCTGCTGCGTACAG
AGTATCCAGCACATATGAATCAACAGAAAATATGACGATCACTTGTTCTA
CCAAGGTTTGCTCTTTCGGTAAGCAAGTTGTGGAGAAAGTGGAAACGGAG
TTCTCATCTTACGAAAATGGCCGCTACGTTTACAGAATTCATCGGTCAGC
CATGTGCGAATACATGATCAATTTTATCCACAAGCTCAAACATTTACCAG
AGAAATTCATGATGAATTCAGTTCTCGAAAACTTCACAATTTTACAAGTC
GTAACAAATCGACAAACTCAAGAGACGTTACTTTGTTTGGCTTttgtttt
tgaagtttcttCAAATGAACATGGTGCACAGcataatgttttcaaattag
TCAAAGATTAAATCTTAAATAGctctatttttaacttttaccaTTATAAA
TCAGAATCAGTGTTGTGAAAAGTTGTTATTTTTTCTACGCGAGTAAATTT
TACGCAAacatatatttttggaaaaagaaactGTATAGATAATTAGTACC
TACTTTTGTAAATATCTAGTGATGGAATATGTATTTTTCTCGTTATATTT
TCCTCATTTTAAAAGAGGGTTAATGCtttattgataaaattttatattGA
GTACGATTTTAGAGGTGCAAGTAATTCCGATCTCTTCTCTATGTTGGCTA
TTATTGAAGGTGTTTTAGGAGAAGAAATTTTAACAGGAAAATAAATCGAC
AGATGGGCCATTCTTCAATTTCGGTGCAATTTGATGAAATGATTTTTGAC
GAATGACTTTTTATTTGTGGAGAGCAATaagagtttttttctatttttgc
taTATTTGGTTGAGTTAGAGGAGGTTTAACGTCCATTAAGGTATATAAGT
TATTATGACATAAAAGGCAAGCTACGGAAAATCCATTGTAgagaatacac
tttttctaaatttgaaaattcattttcGTGGATAGGAGTTCCCGTATTTT
TCCATagttttcataaatttttcgaTAGACCCTTCCTGATAACACCAACA
ACAAATAAGAACGGGATGCTGATctatttttttaatgactttaTCTTAGT
GTTTTAGCTAAGTATAAAATTTTGTATCAGttagttttcaaagagaaatt
tGTTAAAAGATGTACATTTGGAAAACTGAA
Run BLAST on NCBI

transcript from alignment at sc0000649:89860..103426+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027868 ID=TCONS_00027868|Name=TCONS_00027868|organism=Clytia hemisphaerica|type=transcript|length=13567bp|location=Sequence derived from alignment at sc0000649:89860..103426+ (Clytia hemisphaerica)
ccactttcaaaaattttcaagatttggcTGTTTtcgaaatgttcttaact
tgttgtaATATTCTCTTTAAAAAAGCGTGTGCTAAACACGGAGGAGAGTC
TCTCTTCTCTGATTACaataattaaaactttttaactttCACGACGGAGA
GTGTcgtgatgtttttaaaaatagatgATGTTATTCGCTGTATCTTGAAT
TGATAatccttttgttttaaatgtttgcATTTTGGCCAAACGTACTTAAA
TAAATCACATAGAGTCTGTACGCATTTGACTTTCGGAAGTTCGGCCAAGG
ACATATTGGTTTTATCATAATGTTTTCGTGTTCATTTTGGGCGCGCCGAT
CATTCTTGATAGAAATAGTTCACATTCTTTgcgaaaacaaaagtaaactt
ttcaagcaaagatttttgaaatatttctgtACGTTTCAAACATTTGGAAT
TCTTCTTATAATAAAATATGGTATGttatttcttcattttacaACGGGTA
TAGAACTGTCAATGCGTCCtaaaaaatatgttattttctAAAACCTTTCT
AAAAAAGACATCGGTTCCTTGATTCCTACTTTTTTAGTATATTTAATCGA
AAGACTCTACTTTTTAGAATTTCTACATTGATGTTCATGAATTTTTAATG
CTGTTCACACGATTTCTCTCTCCCTTCCATAGAAAAAAAGTAGCAATTTT
AGTAAATGTACTGTAGATGAATCTTTAACAACCATAAACAAAGTCTAAAA
TCGAACCAAAATCTGATCACAAAACATGGCGGATGATAAATTGAGAGAAC
ATTCAGTTAGAGATCTCAACCAGAATGAAAGAGTATCAGCAAGTACTGAC
CCTGAATCCATGGCTTCTGATGCTGAGGGTGTTTGGAGTCCAGACATAGA
ACAAAGTTTTCAAGAAGCATTAGCAATCTACCCACCATGTGGTAGAAGAA
AAATTATACTGTCAGACGAAGGGAAAATGTACGGTAAGTGAGTCACAACG
ATTTTgttattttagtgtttttcttctataatctttttttcatgtcttct
taaaaaagaagacaagaCAAGTATTTGATAAATGTAATCTTAataactga
aatatttttgaattagtAGGAGCAATTAAAAGTCTTTATGACAGTTAGAT
TCCTTGCATTGTACTAAGTTTTGtcaaattctttcaaaacttGCAAGTgg
ttataaaaacaaaaggaatttgatccattttattttttttgtattaagTT
ATGCTTGGCTTTTAAGGAATTCTTCATATATAAATGAACTTATAAAACCT
TGATTTATTGTGTGTATTCTCATTTTGTTTACTCACTTTAGAAAATTTta
cacaaatatttttttagcttttggtGGGGTTGAATCACATAACCCACCTA
GGACAGTCTGGCATATCTTTGCAATTGCCTGGGGTGTAACTAACCCATTT
TAAATGTGCAAAACATAggcaaaacatgctaatttgaccTTTAAATAGAA
AATGTACCTTAAATAcaaactcaaatcaaaacaaaaatggtagagtagag
ctgtgagcggagctgcgtagttcatttgttttgaaattttgctgctttga
ttggtcagtcatttgagttACCCGAATTCACGGTATCTTATGTAAAATAT
TCTCCaaatatttaagaaaaaaaaccatTTACCCAGTGGAATTTTACATG
GTATTAGCTACTTACATTTTCTAGCCATTGCATCAGATTGCATTTCAACC
AATTGCAGTTTcaaacagggggggggtcggtagtaaaatctcagacatat
atgagtagtaaaaggatctttacgaatttttacataccaccacccagact
cttggaagaagtattttactaccctggtagtaaaagtctttgggacaatt
tgtcatggagaccacctattttttggttgcttttcggactgattttacaa
aaaaaattaaagtcttttttacattgacaaaaaaattcgaGAATTtattg
tttgcagcaaacaactttctaGACAGGAAACCCACCTATCGCTTCACTGC
GTAAACCTCCAAAATGTCGAATTCCTTGTTCAGCAGCTATTTCCCTCATC
ACTTTGtcagtcaggaacagtcgccttattaggagacacctcctgattag
gagacccgtctcctaatcaggaggttcacgtTTCTTAATCAGGAGACGGG
TGTAATTATCTCGTGAAAGAGCAAACATAGATGATGCGATAGCGTTCCCT
TCTTCTTTGAAGGGAATAGATTTTGGATTGCTTGAGACACTCGCGTTAAT
TGTTTGAGGTGCCTTTTATCCTTCTTAGAAAGGATTTTTGAATGTCTTTA
AGTCTCTGAAAGAGACCAACAGTTGGACTCCATAGAACAGATGACCGCGA
TGAAAACGTTTGCAGTATCCATGAAGTTaaactttttgctttttgaatGG
TTGAAATTACTTGTTCTTTAAACAAGCAATCGTTACTTATCAGGATTCCC
AAatcttttataacatttttgCGTTCAATGATATTGCCTGATGGTGATGT
ATGTTTGTTTGGTCCTtgataaattgattttgaccatATCTCAACATGca
tttttaattgagaaatGTTATATTATCTTTTAGGACGTAATGAACTTATT
GCACGATATATCAAACTTAGGACGGGCAAAACCAGAAGTCGAAAGCAGGT
ATGTAAGAAAACACAGATAATTTTTAGCCACGattgatttcaaaatagcc
AGAATCTGCAATATTCATCATTAATTAATTAACAAGCAGTAAGTGATATA
TGTAAGTCACAGGTCAACAGTTCAAggacggttagtgtaaaacacaggtc
acaggtcacgggtcagtgttgacaggtcagcttcaattactgtaaaacac
aaagaaaatgtttgaaaaacagttgttaatgtcaaaaatataattccaaa
ggtattttattgatctagaactattttaaagctaaacaTCTACCCAAGTG
CTTACCACGTGATTTTgcgttttatgccgtgtataacacggacctgtaat
acttgtattatatattacatctatatcacacatgtaaacaaaatatcttt
tcaatgttataagcatgttacgtatgttatatacaaagaataaagaaata
ttcgaatatcgatctcatctttgctttaaacagccccctatcaggaaaat
agctatttcacaatcactatgtcatatctcattttatcacctgcatcacc
ttgggtatgataacaagaattgatgaaaataatgtcaatgagattatatt
ttataaatgtttcaacatttttatcccctgctttgtatttttgataaaat
gacggcactattttcatctctctaaaacagctctcttggagtatttcttg
ttttcaaaacctgtcaatctatatccacttgcagtgtcagcatcctatta
tgcatgaagaatattttattgttaattggtgtaaaaaacctcatactttt
gagataacatcattatttacataatttaagtgtcatttgttgtcaatgtt
tggggttgatgatttgtcatTTAAGTCTCctaaataacatattttgatat
tacatttgcattacatataatattttcaggagcttatgttatgagttgta
tgttaagagtgcgttacagttttccggtctgtaatttgtatgacctgtga
cccgtgacctgtgacctgtgacctgcgttttacactaaccggttCAAGGA
TCAGTGCTGACAGTGCTTTAactactgtaaaacacaaagaaagcACTTGT
TATTGTCAACAATATCCTTATGCAAGTATTTTAATGATCTGTAACTTATT
GAAAGGTCAAAATCTATCTATGTGTCCACCACATAGTGGTGGAGTAGAGT
ATGGAAAGGGCCTCAATCCCCTTTCTATCTTGGTATCCCCCAACTTTCAA
AAGTGTCCATCCCCAAGGTTTTTTAACTCAATTCTTTAAGATGCAGGGTT
CGTACATAGGCtgtttttcctgtttttcctgttttttgacttttttcctg
ttttcctgtttttttgtcAGTTATTTCATGAAAGTCctgtttttttctca
tttagctttagaaaaaatcaaaagtggaagaaaaagtaaatataGTTAAT
AAGATATGAGATAAGTATCGTTGAAATCAATTGTATAACTTCAATCTATT
CTACTGTACTAGTATCTGCAAGCTTAGGTAGGGCTGAGTATGGGTGTTGT
TACGTATAatattggctaggaattgggttattatcagttagggttagggt
tggagcttgaaacaagcactcttttgtgatttttcttaatacagtctggt
ctgcaatttgtacaatataaatagccgtcagaagcgCTATCCTAGCATGA
ATCCATTGCGCAATGGATAGGGcaatgggtttcaaaacatcggaactttg
catttagtgggttcgaatcccaccggtggcaatccgtcggtaagtcattc
agtaagttagaaaacataaaataactcacaaagaaccagaaagtcagaaa
aactacgaacaagagactggaaagtacgaaataagtctaGATCTGTCTTT
CATCTTTGTGAAGAAGACACGACCTACCATATACATAGACTTCAAATAAT
TAGGTATTTAGGCCAAAATTAAccgaaatcacaaaaaaacagggttttgc
ccgggaaaaaatctaaaatctgttctgttgcTGCTACAAGCCTCAAATTA
GAATTAAAATATTCCTTGGAAAAAGTAGGATTGGAAtttaacaattatat
acctctaccatgtatgtaaaaattcaaagaattagGTATATAGGCCAAAA
CTGACCAAAATCAGGGAAAAACGGGGTTTTACCTTGAAGtaaaacctaaa
atctgttctgttggtgctacaaacctcaaattaggcttaaaatgttcttt
ggaaGAAAGTAGGATTGGAAAGTTACAATTATATGTTATAGTTACTTACA
TCTACACCGTATTTTGTAAGGTTATTTATGTTATGAAACCTAGGCTAAAA
GTGTCAGTTTTCCTCTGAAATTCCTGTTTTTTCACATTCATCAAGCCTGT
TTTTATTATGAAAAATAGCCTGTTTTGTATTGGAAGGCCTGTACGAACCC
TGCAAATGTCAACTGNGAAAAATAGCCTGTTTTGTATTGGAAGGCCTGTA
CGAACCCTGAAGATGTCAACTGGATTTTCACTCCTAATCtccaattttga
atattttttgccatTTCCGAAATTCTGCGAAACTTTTTGCTGAATTCAGT
TTTTCTGCACTAAAATTGCCCAATTTTCCATCTCCAACTACCTTAAGaca
tgaacatataaataaaagactggacgtctatcttctattgtgtctttgaa
gcgagcgTCGTTGCcgtctgtatttcaaaattggtataaaaaatcagaca
atattccgtcacaattttgtttcttaaaattacttaggtaaaaggattga
taaaGCTTAAACATTAACTgtaattcacaaaagaattattctAAATATTT
TCATGAGTTTGCAGtatattttttcaacatttttcaacgcAGAAATGCTG
ATTTCAACTGCATGTATACTTTttaatcacttttgtcactccaataactt
tttttatgatatgaaaaaaatagtatgccaaagttgagagcctgtgtcat
aagattatcataatttgaatcccaTACTCTCTAAAATTTTTGGGTCCAAA
CTTAAAGATATTAGATAGTAATTAAtcttgacaagctgacgatgattttg
cctctgttatctttgttatgatagaGATAAATGACTTGAAAAGAGTAGAA
CAGCAGAAACTTTTGTTGAAGTTTAGGCATTGtaagcaaggtattcccaa
gaggtatatcatcaaaactTATTGTTACATTTTATGACTTTAACGAGGTG
ggaacgaagctagcagtgttatcttcgaaaatacaaaggagatgaaTGTC
CAGTCGTTTAAATGTTCATGCTTAAGAGTTaagagaactaattttcgtga
tAACTAATTTTTGTGGAACTAATTTCGCTGGAACTAGTTTTCGCGATTTT
GAGTGTCTTCCATGAAAATTAGTTCTCCCAAAtgcaattttttctaaaaa
tgctcTAGGACACCCACAAAAAGTGGGTGTCAATCGTGAAGATTTAGTTC
CGCAAAATGTGCCAATTTAGTACCCTCAcatcgcgaaaataagttccgca
aaaaattagttcccttaagttAAGGTAGAgggcttttttcacatgtacag
AAGATTTTACTTAAGATTTCCAAGAATGGGGAATTTCCATAAGCTTAGGT
ATTGTTTGAAGGCCTTAATAAGTGAACTTTGCTTACATTCATGCTATGTA
ATGTCGAGGAAgttcccaaaagacagccttacaAACGAATTTACATGATC
AAACTTCTGAaagttcttcaaaattttcgttgAATTCTGCCACTTCGTTT
GAAAAAAGGGCCAATTTCCCTCCAACCCTAACTAATAAAACTCCATCTGG
TGGTaggtatttcaaaaatttagatttgttTGCCTAGCGATTTTTTCAAT
ATATGGCAAAAGTTTGGCACATCTTCAGAAGTTGTAGGATTGAGCTAAAA
TTTCGACCAGTCCCTGCAAGATGAGGTGTTAAGGTTCTGATATAGTACTT
GCAAGAATACTTTTAAAAGTTCTGCCAAGTTTCTTCACActtttacatgt
ttttatagAACCTGGAGAAATTAAAACTTTTGCCAATATAGTAACTCTGT
TCTACTCTTTCAAACCATGCTTTTTTAAACTCAAAGTTCTCATCTCCTTT
CTTTTTATTAGGTTTCAAGCCATATTCAAGTTCTTGCTCGCCGTAAGGCC
AGGGACATACAAGTAGGTTTAAAGCAtgtaatttatttattaaatcAGTG
CCagaaattttatatttatctCAAAATTCATCCATTATCATTCATTTATA
TCAAGTGTCGTCTTTCCAAAAGGATTTTGGTCACCTCATCTTGTTCAAGC
CAGtttgaatgaattttaaataactaattcctttttttgcattattaagt
tttggcagaaaattttccagttttttAGATTAGGTGCCACTTTTTGTGGT
GGTTGACAGTGATAGTAAATGCTCTATACAATTCAATgtaaaatcaaatc
tgaaaaCTGTATTTTTCAGGACTCTCAATCAAAAGACAAGGCACTTCAAG
CAATGGCCAACCTAACTTCTTCACAGATAGTATCTGGAAACAGTCTACAT
CCATCCAAATTGCTGGAGCCAGCGGTCAAGAGAGAACTCAATTTGAGCCC
ACAAAATGTAATACTTTTTGGATCTTTGAAAAAGTGaatgttgaaaaatt
gcaaaaattcggGTGTTCCTAAAAGGTAGGAAGTAGCCCAATTGGGCTAC
TTATTGGGGTACCCCTTTTTGTCCTAAATTTTACAAACTGATGCTTAGTT
CATGATAAAATGATACTAAAACCTTCGATTGATAATTTACAAAAATCAGA
TTTAAGACTGCCATAAAACTTAGGTCGCAATAGTTATTTTCCCAAAGGTA
CTGAAATCTACAATTTTTTATCATGCCATGGTCAGAGACCATGTTGTCTT
CCTTCTTCACATACTCGAAAAAATAGAGACCAGAATAATATTTCTGAAAA
ACGCAGAACAATGTAATATGTTCTGTTCGATAAAATGAAGGATGTCGCGA
AAATATGATTTCCTTTTATTTTAATCTTAATTTTATAAGAGTCTCTAAAT
TTGGTGTTAAAAGTTATCAGTTTGCAATTTGATCATTTTGATCTTTTATC
CTCTCTTTTCGATCTTTTGTGTTTTAATTTATTATGTACACAAGAACATA
TTGACTTACTTCAATAATCTGAGTAATGTTATTAAATTTGAAGTTGCTAC
CCATATACCCTGtcacaaagctctatttcatACACCATGTGCTTTGACCA
CATGGTAACATGTATCTTTGAATATCTTCTGCATCATGCAATAgtaattg
aattatttttcagattCTTAACTCATGGCCTAGCAGATGActttcctaca
caaattttccgTTATTTAATTCTGGTCTGTTGTAAATAAAATGGGTACCC
CAATAAGTAGCCCAATTCGGGTACCCTACCTTTTAGGAACAccccaaaaa
ttctgaaaaaaaaacacgaaaaatgaaaagatttactaaataaattctca
aattttagtCTGGATACCAACTTTTTGGTATTTAGGTACCCCGTGGTTTA
AGTTTTTTGGgtataccaccacgtcactaaacatCATGATGTCCtagatt
ttagtactgaccccacCCCACCCCCCCTGATTCACGAACAAAAAGGACAA
AGTTTCAGATTGACATTTAGATTGACAGCTAGACATATGTTAAGATTGTG
AGCAGGAGCAGGAGCAAAGAATTGTGCTGCCTAATGTTCAGCCAAACATA
CATGAACGACTTAAACAGTCAAAACTGacgaaaaaattgaagaaaaaagt
tttaaggACGACAATCCAACAAGTCTAGGTTAGCCAATGTTAACGATATT
GATATAATCtctttttagattttgataATGATAACAACTATTTTTTTATC
AGTATTGGCCATCTCCTCAAAATGGTGTACCTCCTCCACCTGCACCGCCC
ATTGGATATCCGTTCACAACTGCAAGTGCTTTTTATGCCAGTACCATAAC
ACAAGCTTCAACCACTTCCCACGCGCAAGGCATCAATTCCGACAGACATT
CTTCCTCTCGTACTTTAAGTAATCCAACTTCACCAACTATTCATGATGGA
CCAGtatgtaatttttatttatggGATCCTTctacaaaaattaatttttc
attattaCATCACAAAAGGGCTGACCAAGCTGATTCGGATGTTACTTGAA
AATAAAGACTTTGaacgattttaaaaattttaaactgaaaattaattttt
gaagtgATTTGCTTCATGTTATAAATTCATAGATTGCACCCCCACTTTTT
TAATAGGGGGTGCCAAAAAATTTGGGAGCCTTTGTAGGGGGAGGGTACCA
AGTGGGGATCAAATAAGAATGGGGGGGGCTGGAAATGTTGATCAACTCAA
TCATATACAAATTGTCACGGTctgttttcaagtaaaaatatgTACCATCA
AAATACAAAAGTGTATCATGTTATTAAAAAACgctaattatatttttata
ttgcTCAGATTTTCTGCATAAAAAGGAGGGTAAGGTTTCATTAAGATGGG
GTATGGATATATAGGGGGATGAAATAAAGCTAGGGGGTTCTTACCCCTCT
GTAGCCTAAATCTAGACTGATccatttagaaatattttgcgtAATGgact
gttccattaaatttccatacgaacTTTTCCATAGAAAAAGAAGATTCTTA
GAAATGTGTGGAtaacccctggaaaatggcaaaatttgcaaaagaacctt
tggaaaaatcattttcataccTTGAAAAAGTGAGGGTGGATGAACTAATG
TCAGTCTTTTANCGACAGACATTCTTCCTCTCGTACTTTAAGTAATCCAA
CTTCACCAACTATTCATGATGGACCAGtatgtaatttttatttatggGAT
CCTTctacaaaaattaatttttcattattaCATCACAAAAGGGCTGACTA
AGCTGATTCGGATGTTACTTGAAAATAAAGACTTTGaacgattttaaaaa
ttttaaactgaaaattaatttttgaagtgATTTGCTTCATGTTATAAATT
CATAGATTGCACCCCCACTTTTTTAATAGGGGGTGCCAAAAAATTTGGGA
GCCTTTGTAGGGGGAGGGTACCAAGTGGGGATCAAATAAGAATGGGGGGG
GCTGGAAATGTTGATCAACTCAATCATATACAAATTGTCACGGTctgttt
tcaagtaaaaatatgTACCATCAAAATACAAAAGTGTATCATGTTATTAA
AAAACgctaattatatttttatattgcTCAGATTTTCTGCATAAAAAGGA
GGGTAAGGTTTCATTAAGATGGGGTATGGATATATAGGGGGATGAAATAA
AGCTAGGGGGTTCTTACCCCTCTGTAGCCTAAATCTAGACTGATccattt
agaaatattttgcgtAATGgactgttccattaaatttccatacgaacTTT
TCCATAGAAAAAACGATTCTTAGAAATGTGTGGATAACCccttggaaaat
ggcaaaatttgcaaaagaacctttggaaaaatcattttcataccTTGAAA
AAGTGAGGGTGGATGAACTAATGTCAGTCTTTTATCCCTGGAAATCTCAG
AATAACCTTTATatgaaaaatactttttatacCCCTGGAAGTACTTTATA
CCCCTGGAAGTACTTTAtacccctggaaatgttcgtccatccCCTGTTTG
GATATATGgtggaatggcccaatatgtttaaagggacataacagttcttg
ccaaatttgtaaacaaactgtatgcagcggatacaaaatcaaaacaaatg
tcacatgtcaaaataaaaaatcaaatcaaatatggctaattttgatagTT
CAATTGTTCTACCAATTGTTCAATTGTTCTactacaagtttgttttggac
acgtgattttcattgttctctttaatgacacgtggttcgcgcaatgtttt
actacttttatgtccctttaacgtGCACTGAtaacatttaaaaagaaaca
attttttgtcGGATGCTGTTTTGAACAAATACctgaaatttcttattttc
ttttagCCGCCACCATTACCACACAGTTCCAGTCTGCAACCCAACAACAC
GACCTCTAGCCCACCATGGCAGACAAGACATTCCCAAAACCAAATGCCAC
TTCGCTTACTTGATTTTTCTGCATATATCGAAATTGACAAAACGGAAAGC
GTAAGTATCTTATATATCTTATCATCTCCAAACTAATGACtcaaagaaaa
acattaaatGAACTATTGAATGGCCTATTTACCTTAAGTTCATTACTCTT
CTCTTTTTTAGTACCACAAGCATGTctttgtaaatttgaataactaTCGC
ATATTTGAAGATCCTGGAATCGAATCAATTGATATTCGACAAATTTATGA
CAAGTTTCCTGAAAAGAAAGGTGGTTTGAAAGAACTTTACGAAAAGGGAC
CTCAAAATCTCTTCTTCTTGGTCAAGTTTTGGGTAAGACTACTAAATTTT
CTTAGGGTTAGAGCTTTACAAGATCTCTTAATAAAagtgttttttgactt
ttttttacaatcCACACAACATCCGCCTAAAATGTAGCAATAATCTTTCT
TTGTAATTAATTTCTATTTCCTCAGCAGTAGTGTGGAATATAGTCCTTTC
CTTTCTTTCCAAGGCTGATTTGAATACGAATATATCGGATGATGCAGCTG
CTGCGTACAGAGTATCCAGCACGTAAGTCACCTTTCTTTAAACACACAAT
GCTCAACGTGATCTGTACAAGACCATAAAGAAGATAGAAAGAACCTcact
tacacgcttttttaaagaaattttggctTAACCTGagattctttttaaat
ttttattatttcaagcAATAGAGCTATTGTTATGGGGCTAAAATCTGagc
atagcttcagccaggtttctagctccccccaacaaagtaaggtcccccca
acaatttagctccccccaaaaattgccttgtgctaggtcccctaacacTN
AAAGCTTCTATATCTTAAAACTCTTCACCTACGTTTTTACCCTAGATATG
AATCAACAGAAAATATGACGATCACTTGTTCTACCAAGGTTTGCTCTTTC
GGTAAGCAAGTTGTGGAGAAAGTGGAAACGGAGTTCTCATCTTACGAAAA
TGGCCGCTACGTTTACAGAATTCATCGGTCAGCCATGTGCGAATACATGA
TCAATTTTATCCACAAGCTCAAACATTTACCAGAGAAATTCATGATGAAT
TCAGTTCTCGAAAACTTCACAATTTTACAAGTATGTGTTTTATTTATTGT
CTTCGTCTTGTTTTGTAATCCCTCTTGGTTTGAACGTTTTCTTGACCCAT
TAGTCGGAAGTATTCCTGCAATTATGTTGATACGATATCGAAGTCAGATG
TAAAAACGGAATGCGGTATACGTTAGAGTTTTTAAAAGTGAAACCTTTAA
ACCTCAAACGGTTTTCCCCTTACGTCTCTAATGGTCTCTATAACAGAAAC
GATTATTCCAGTGCGCCATGGCCATTGAATTATGAGAGCTTGACAGTAAA
CAGTTTTAGCAAAACTACAAAAGGATCTTAGGATCCAAAGTTccaaaatg
gtccagtagggcttgaaatatagcctagaaaccaataaatccctcccaga
tcgaaataatcgatgaaatcaagttgaaggcatGGAATTGACATTCTTgc
tcgaaaaatggtaaattagccaaaagtgccaatatattatgacactGATT
GTAGATATAACGTTTCTGTAATGCCAACAAATCTGTTGTTCGAGTTATCA
AAGCTATTTTGGATCAAGTTGATTGAGAAAGTGATTTCCGTAGATCCTCC
GGTACAGAATTAAAAATTAGGTGACCGGCAGTTGCTTTACTTGCTGATGG
GGAaaagattttgaatgttttttatcCATTTCAGGTCGTAACAAATCGAC
AAACTCAAGAGACGTTACTTTGTTTGGCTTttgtttttgaagtttcttCA
AATGAACATGGTGCACAGcataatgttttcaaattagTCAAAGATTAAAT
CTTAAATAGctctatttttaacttttaccaTTATAAATCAGAATCAGTGT
TGTGAAAAGTTGTTATTTTTTCTACGCGAGTAAATTTTACGCAAacatat
atttttggaaaaagaaactGTATAGATAATTAGTACCTACTTTTGTAAAT
ATCTAGTGATGGAATATGTATTTTTCTCGTTATATTTTCCTCATTTTAAA
AGAGGGTTAATGCtttattgataaaattttatattGAGTACGATTTTAGA
GGTGCAAGTAATTCCGATCTCTTCTCTATGTTGGCTATTATTGAAGGTGT
TTTAGGAGAAGAAATTTTAACAGGAAAATAAATCGACAGATGGGCCATTC
TTCAATTTCGGTGCAATTTGATGAAATGATTTTTGACGAATGACTTTTTA
TTTGTGGAGAGCAATaagagtttttttctatttttgctaTATTTGGTTGA
GTTAGAGGAGGTTTAACGTCCATTAAGGTATATAAGTTATTATGACATAA
AAGGCAAGCTACGGAAAATCCATTGTAgagaatacactttttctaaattt
gaaaattcattttcGTGGATAGGAGTTCCCGTATTTTTCCATagttttca
taaatttttcgaTAGACCCTTCCTGATAACACCAACAACAAATAAGAACG
GGATGCTGATctatttttttaatgactttaTCTTAGTGTTTTAGCTAAGT
ATAAAATTTTGTATCAGttagttttcaaagagaaatttGTTAAAAGATGT
ACATTTGGAAAACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015753XLOC_015753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027868-exon-sc0000649-1491911889:89860..90842TCONS_00027868-exon-sc0000649-1491911889:89860..90842Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:89860..90842TCONS_00027868-exon-sc0000649-1510915933:89860..90842Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:89860..90842TCONS_00027868-exon-sc0000649-1575043694:89860..90842Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:92493..92557TCONS_00027868-exon-sc0000649-1491911889:92493..92557Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:92493..92557TCONS_00027868-exon-sc0000649-1510915933:92493..92557Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:92493..92557TCONS_00027868-exon-sc0000649-1575043694:92493..92557Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:96721..96771TCONS_00027868-exon-sc0000649-1491911889:96721..96771Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:96721..96771TCONS_00027868-exon-sc0000649-1510915933:96721..96771Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:96721..96771TCONS_00027868-exon-sc0000649-1575043694:96721..96771Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:97079..97216TCONS_00027868-exon-sc0000649-1491911889:97079..97216Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:97079..97216TCONS_00027868-exon-sc0000649-1510915933:97079..97216Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:97079..97216TCONS_00027868-exon-sc0000649-1575043694:97079..97216Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:98512..98656TCONS_00027868-exon-sc0000649-1491911889:98512..98656Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:98512..98656TCONS_00027868-exon-sc0000649-1510915933:98512..98656Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:98512..98656TCONS_00027868-exon-sc0000649-1575043694:98512..98656Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:99430..99485TCONS_00027868-exon-sc0000649-1491911889:99430..99485Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:99430..99485TCONS_00027868-exon-sc0000649-1510915933:99430..99485Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:99430..99485TCONS_00027868-exon-sc0000649-1575043694:99430..99485Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:100666..100809TCONS_00027868-exon-sc0000649-1491911889:100666..100809Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:100666..100809TCONS_00027868-exon-sc0000649-1510915933:100666..100809Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:100666..100809TCONS_00027868-exon-sc0000649-1575043694:100666..100809Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:100921..101091TCONS_00027868-exon-sc0000649-1491911889:100921..101091Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:100921..101091TCONS_00027868-exon-sc0000649-1510915933:100921..101091Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:100921..101091TCONS_00027868-exon-sc0000649-1575043694:100921..101091Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:101273..101331TCONS_00027868-exon-sc0000649-1491911889:101273..101331Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:101273..101331TCONS_00027868-exon-sc0000649-1510915933:101273..101331Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:101273..101331TCONS_00027868-exon-sc0000649-1575043694:101273..101331Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:101655..101889TCONS_00027868-exon-sc0000649-1491911889:101655..101889Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:101655..101889TCONS_00027868-exon-sc0000649-1510915933:101655..101889Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:101655..101889TCONS_00027868-exon-sc0000649-1575043694:101655..101889Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1491911889:102544..103426TCONS_00027868-exon-sc0000649-1491911889:102544..103426Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1510915933:102544..103426TCONS_00027868-exon-sc0000649-1510915933:102544..103426Clytia hemisphaericaexon
TCONS_00027868-exon-sc0000649-1575043694:102544..103426TCONS_00027868-exon-sc0000649-1575043694:102544..103426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000649supercontigsc0000649:89860..103426 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0990998	0.0644253	0.0748039	0	0	0	0.0424695	0.0795189	0.276823	0.20603	0.535474	0.176	0.327051	0.182523	0.112074	0.181166	0.297575	0.202641	0.245806	0.158428	0.25362	0.373883	0.416628	0.275473	0	0	0.450757	0.0483402	0.219438	0.439026
Blast
[Close]
BLAST of TCONS_00027868 vs. Swiss-Prot (Human)
Match: TEAD1 (Transcriptional enhancer factor TEF-1 OS=Homo sapiens GN=TEAD1 PE=1 SV=2)

HSP 1 Score: 482.256 bits (1240), Expect = 2.909e-160
Identity = 267/450 (59.33%), Postives = 319/450 (70.89%), Query Frame = 2 
Query:  827 ERVSASTDPESMASDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRSRKQVSSHIQVLARRKARD----IQDSQSKDKALQAMANLTSSQIVSGNSLHPSKLLEPAVKRELNLSPQNYWXXXXXXXXXXXXXXXXXXFTTASAFYASTITQASTTSHAQGINSDRHSSSRTLSNPTSPTIHDGXXXXXXXXXXXXXNNTTSSPPWQTRHSQNQMPLRLLDFSAYIEIDK-TESYHKHVFVNLNNY-RIFEDPGIESIDIRQIYDKFPXXXXXXXXXXXXXPQNLFFLVKFWADLNTNISDDAAAAYRVSSTYESTENMTITCSTKVCSFGKQVVEKVETEFSSYENGRYVYRIHRSAMCEYMINFIHKLKHLPEKFMMNSVLENFTILQVVTNRQTQETLLCLAFVFEVSSNEHGAQHNVFKLVKD 2158
            ER+S S D + + +DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTR+RKQVSSHIQVLARRK+RD    ++D  +KDKALQ MA ++S+QIVS  ++H +KL  P + R                            F  A  F+   I Q      +Q +      +       T+P                      S P WQ R S     LRL++FSA++E  +  +SY+KH+FV++ +    + DP +ES+DIRQIYDKFPEKKGGLKEL+ KGPQN FFLVKFWADLN NI DDA A Y V+S YES+ENMT+TCSTKVCSFGKQVVEKVETE++ +ENGR+VYRI+RS MCEYMINFIHKLKHLPEK+MMNSVLENFTIL VVTNR TQETLLC+A VFEVS++EHGAQH++++LVKD
Sbjct:   17 ERMSDSAD-KPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATAIH-NKLGLPGIPRP--------------------------TFPGAPGFWPGMI-QTGQPGSSQDVKPFVQQAYPIQPAVTAPI----------PGFEPASAPAPSVPAWQGR-SIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD 426
The following BLAST results are available for this feature:
BLAST of TCONS_00027868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEAD12.909e-16059.33Transcriptional enhancer factor TEF-1 OS=Homo sapi... [more]
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