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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027871 ID=TCONS_00027871|Name=TCONS_00027871|organism=Clytia hemisphaerica|type=transcript|length=2284bpRun BLAST on NCBI protein sequence of TCONS_00027871-protein >TCONS_00027871-protein ID=TCONS_00027871-protein|Name=TCONS_00027871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MADDKLREHSVRDLNQNERVSASTDPESMASDAEGVWSPDIEQSFQEALARun BLAST on NCBI transcript from alignment at sc0000649:90294..103426+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027871 ID=TCONS_00027871|Name=TCONS_00027871|organism=Clytia hemisphaerica|type=transcript|length=13133bp|location=Sequence derived from alignment at sc0000649:90294..103426+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000649:90294..103426+ >TCONS_00027871 ID=TCONS_00027871|Name=TCONS_00027871|organism=Clytia hemisphaerica|type=CDS|length=15246bp|location=Sequence derived from alignment at sc0000649:90294..103426+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027871 vs. Swiss-Prot (Human)
Match: TEAD1 (Transcriptional enhancer factor TEF-1 OS=Homo sapiens GN=TEAD1 PE=1 SV=2) HSP 1 Score: 482.256 bits (1240), Expect = 6.873e-163 Identity = 267/450 (59.33%), Postives = 319/450 (70.89%), Query Frame = 1
Query: 181 ERVSASTDPESMASDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRSRKQVSSHIQVLARRKARD----IQDSQSKDKALQAMANLTSSQIVSGNSLHPSKLLEPAVKRELNLSPQNYWXXXXXXXXXXXXXXXXXXFTTASAFYASTITQASTTSHAQGINSDRHSSSRTLSNPTSPTIHDGXXXXXXXXXXXXXNNTTSSPPWQTRHSQNQMPLRLLDFSAYIEIDK-TESYHKHVFVNLNNY-RIFEDPGIESIDIRQIYDKFPXXXXXXXXXXXXXPQNLFFLVKFWADLNTNISDDAAAAYRVSSTYESTENMTITCSTKVCSFGKQVVEKVETEFSSYENGRYVYRIHRSAMCEYMINFIHKLKHLPEKFMMNSVLENFTILQVVTNRQTQETLLCLAFVFEVSSNEHGAQHNVFKLVKD 1512
ER+S S D + + +DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTR+RKQVSSHIQVLARRK+RD ++D +KDKALQ MA ++S+QIVS ++H +KL P + R F A F+ I Q +Q + + T+P S P WQ R S LRL++FSA++E + +SY+KH+FV++ + + DP +ES+DIRQIYDKFPEKKGGLKEL+ KGPQN FFLVKFWADLN NI DDA A Y V+S YES+ENMT+TCSTKVCSFGKQVVEKVETE++ +ENGR+VYRI+RS MCEYMINFIHKLKHLPEK+MMNSVLENFTIL VVTNR TQETLLC+A VFEVS++EHGAQH++++LVKD
Sbjct: 17 ERMSDSAD-KPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATAIH-NKLGLPGIPRP--------------------------TFPGAPGFWPGMI-QTGQPGSSQDVKPFVQQAYPIQPAVTAPI----------PGFEPASAPAPSVPAWQGR-SIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD 426 The following BLAST results are available for this feature:
BLAST of TCONS_00027871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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