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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027886 ID=TCONS_00027886|Name=TCONS_00027886|organism=Clytia hemisphaerica|type=transcript|length=2116bp
TAAATATGGCAGGCAGAAATGACAGTGGAAAAGATCTTGGTAAATTGTTT
GTCAAGGTTTTCAGGGAACGAGCACGTCAGCAGCATAATAATAATACTGA
TATTGATATGACAGATGTTATGGCATCTTTGATGagagaaaaatatagca
aactAATATCTCCGATCCGTTGAGAATGAAAAACATGAAGAGTTGacatt
tcaaatgaaaagaCCATGTTTTCCATATCAGTTTTGGATGCAAGATTTAC
CTTGGTCAACTGGAGCAAAGgtTAACCCAGATTGGGATGAAACTGATGTT
GGTATCACAGACTCGCTCAATCAAGCCATAATCTCAATAGCCGAAAAAGA
AGCTCAGTTTCCAATAAATGAAAAGGGTCTTGCTATTCAGAGGAAGATGG
GAAAATTACTTGAAAATGTGACAGAGGATCTAAAAACAAATCATAAATCT
TTCAAGGATAGTACTTTATACTATACAGGAAGTATGTATGAAGGGTTGAA
AATTGATGCAGTTGACGAATTTGATTTCATGATTGAAATGCCTGTTCTTT
CCAAAGTTGCGGATATATCAATGAAATCTACAAAACAAATGTTGCAATTC
GAATTAAAGGATTTAAACCCATTCAATGATTCACCAATTGAAAAGGTCAA
AGTAGATGCTGCAAATATACAAGAGTTCTTTGATCGTAAATCAAAATTTG
TGAAGCCTGGAGAAGAATGGATATTCCCTGGAGATGATAGAGAAAGTTGG
AACATACCTGCAGAATTCAATAACACAGATCCTAGTCATTGGATGAATAT
GGCAATCATCATTAGAGCTTTTGGTTTATTGGTTCAAGAGAAAATACAAC
ATCATCTTCCAAGAGAATGGAAATTTATTCCTAATGAATTTGGTTTGGTG
ACCATTGACCATTTTCTTCAACATAAAAGTGCTTTCACTTTTGATATTGT
CACtggtgaaaatcaaattgtAAATATAGATGTAGATTTATGCTTACCCA
TTTATAATCTACCTTTGCTGATGAATTCTAGTGACCCTGGTGATATTTTA
CCAGAGGATTTCAAACAACGATTTAGAGATAACCCATCTATCCATCATGC
CATTATTCGAAACTCAAATACCCTTCGTATATCTTTGTCttgcaaagaaa
aagaagcCTTTACAAAATTTGACTCAGACGACCCACGTAAATTATGTATG
AGATTTTTCAAATACCTGCGCAGTAAATTCATAACACACTTGAAATGGCA
TGATGACGCTGCATCTTGTTTAGTTAATTCTTACCacatcaaaacaattt
ttttatatttatttgaaatttatcCTGAGCAGTCTTCTTGGAACGGAACA
AACTTTGGTATCAGATTAAAAGTTAAGCATTTCTTGTGTTGAGAACTTGT
TTTGAGAAACGaattttagaaagttttttCATACCATATTATAATATTTT
GAAGAAGTACTATCGGTCCCAAGATAACTCTGGAGAAGCTGATCAAGTTG
TTAAGGATATCAATGGACTACTGACATTGTTTGATAAGATGGGGAATATA
ACTGAAGTCAGCGATACTACTGGTTTATTCTATGAAGGAATAGCTCGAAA
AGAGCCAAAACTTATTCGAATTCTTACTGATAATGATAAGAAACGTAGAA
ATTATGAACTTCTTGTATCGCATATCTTTTAGTAAGAAGTTGAAAGCACA
ACTAGCCAAGTTGCCTTGGATCCAAGTTCGTttcatggcttggcagcagg
ttttaagtgccccctaagaattcaggtgacccctaagacttaggtaaccc
ctggttgccaaatattttaggtgacccctaagccgatgacacgtcaattt
ttttcgaaaatccttttcaaacaatcaaacaaatacaacagttagtttag
ctaaatagaataaatgccctaagaaataagagataagctaagtactgaag
gttcatgccagattatcaaggttttgtaagtcagggGTGCAGATCCCTtg
ccagacagattttttatctaagtaaatgcaacaggattaaagaattttta
cagatccagtgccgtaggaaacattttcatattaggggggctgaagttta
atGACACCgcaagggc Run BLAST on NCBI protein sequence of TCONS_00027886-protein >TCONS_00027886-protein ID=TCONS_00027886-protein|Name=TCONS_00027886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MKRPCFPYQFWMQDLPWSTGAKVNPDWDETDVGITDSLNQAIISIAEKEA
QFPINEKGLAIQRKMGKLLENVTEDLKTNHKSFKDSTLYYTGSMYEGLKI
DAVDEFDFMIEMPVLSKVADISMKSTKQMLQFELKDLNPFNDSPIEKVKV
DAANIQEFFDRKSKFVKPGEEWIFPGDDRESWNIPAEFNNTDPSHWMNMA
IIIRAFGLLVQEKIQHHLPREWKFIPNEFGLVTIDHFLQHKSAFTFDIVT
GENQIVNIDVDLCLPIYNLPLLMNSSDPGDILPEDFKQRFRDNPSIHHAI
IRNSNTLRISLSCKEKEAFTKFDSDDPRKLCMRFFKYLRSKFITHLKWHD
DAASCLVNSYHIKTIFLYLFEIYPEQSSWNGTNFGIRLKVKHFLC Run BLAST on NCBI transcript from alignment at sc0000653:15089..17404+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027886 ID=TCONS_00027886|Name=TCONS_00027886|organism=Clytia hemisphaerica|type=transcript|length=2316bp|location=Sequence derived from alignment at sc0000653:15089..17404+ (Clytia hemisphaerica)
TAAATATGGCAGGCAGAAATGACAGTGGAAAAGATCTTGGTAAATTGTTT
GTCAAGGTTTTCAGGGAACGAGCACGTCAGCAGCATAATAATAATACTGA
TATTGATATGACAGATGTTATGGCATCTTTGATGagagaaaaatatagca
aactAATATCTCCGATCCGTTGAGAATGAAAAACATGAAGAGTTGacatt
tcaaatgaaaagaCCATGTTTTCCATATCAGTTTTGGATGCAAGATTTAC
CTTGGTCAACTGGAGCAAAGGTTTAGTgatcaaaatgtttttcaatgTAC
CTGCACTATACCTAAACTTATACTCCCAAGATTTTCAAACTTACACTGAA
TGTTATGATCAATCTGCTTGAAGATTCTTACCCGCTAGCTAAAATCAAAC
ATCTAATTTTATAACAATCTATAACAAACAATCAGACGAATGAAAATAtt
cctttttttcctttttttaggtTAACCCAGATTGGGATGAAACTGATGTT
GGTATCACAGACTCGCTCAATCAAGCCATAATCTCAATAGCCGAAAAAGA
AGCTCAGTTTCCAATAAATGAAAAGGGTCTTGCTATTCAGAGGAAGATGG
GAAAATTACTTGAAAATGTGACAGAGGATCTAAAAACAAATCATAAATCT
TTCAAGGATAGTACTTTATACTATACAGGAAGTATGTATGAAGGGTTGAA
AATTGATGCAGTTGACGAATTTGATTTCATGATTGAAATGCCTGTTCTTT
CCAAAGTTGCGGATATATCAATGAAATCTACAAAACAAATGTTGCAATTC
GAATTAAAGGATTTAAACCCATTCAATGATTCACCAATTGAAAAGGTCAA
AGTAGATGCTGCAAATATACAAGAGTTCTTTGATCGTAAATCAAAATTTG
TGAAGCCTGGAGAAGAATGGATATTCCCTGGAGATGATAGAGAAAGTTGG
AACATACCTGCAGAATTCAATAACACAGATCCTAGTCATTGGATGAATAT
GGCAATCATCATTAGAGCTTTTGGTTTATTGGTTCAAGAGAAAATACAAC
ATCATCTTCCAAGAGAATGGAAATTTATTCCTAATGAATTTGGTTTGGTG
ACCATTGACCATTTTCTTCAACATAAAAGTGCTTTCACTTTTGATATTGT
CACtggtgaaaatcaaattgtAAATATAGATGTAGATTTATGCTTACCCA
TTTATAATCTACCTTTGCTGATGAATTCTAGTGACCCTGGTGATATTTTA
CCAGAGGATTTCAAACAACGATTTAGAGATAACCCATCTATCCATCATGC
CATTATTCGAAACTCAAATACCCTTCGTATATCTTTGTCttgcaaagaaa
aagaagcCTTTACAAAATTTGACTCAGACGACCCACGTAAATTATGTATG
AGATTTTTCAAATACCTGCGCAGTAAATTCATAACACACTTGAAATGGCA
TGATGACGCTGCATCTTGTTTAGTTAATTCTTACCacatcaaaacaattt
ttttatatttatttgaaatttatcCTGAGCAGTCTTCTTGGAACGGAACA
AACTTTGGTATCAGATTAAAAGTTAAGCATTTCTTGTGTTGAGAACTTGT
TTTGAGAAACGaattttagaaagttttttCATACCATATTATAATATTTT
GAAGAAGTACTATCGGTCCCAAGATAACTCTGGAGAAGCTGATCAAGTTG
TTAAGGATATCAATGGACTACTGACATTGTTTGATAAGATGGGGAATATA
ACTGAAGTCAGCGATACTACTGGTTTATTCTATGAAGGAATAGCTCGAAA
AGAGCCAAAACTTATTCGAATTCTTACTGATAATGATAAGAAACGTAGAA
ATTATGAACTTCTTGTATCGCATATCTTTTAGTAAGAAGTTGAAAGCACA
ACTAGCCAAGTTGCCTTGGATCCAAGTTCGTttcatggcttggcagcagg
ttttaagtgccccctaagaattcaggtgacccctaagacttaggtaaccc
ctggttgccaaatattttaggtgacccctaagccgatgacacgtcaattt
ttttcgaaaatccttttcaaacaatcaaacaaatacaacagttagtttag
ctaaatagaataaatgccctaagaaataagagataagctaagtactgaag
gttcatgccagattatcaaggttttgtaagtcagggGTGCAGATCCCTtg
ccagacagattttttatctaagtaaatgcaacaggattaaagaattttta
cagatccagtgccgtaggaaacattttcatattaggggggctgaagttta
atGACACCgcaagggc Coding sequence (CDS) from alignment at sc0000653:15089..17404+ >TCONS_00027886 ID=TCONS_00027886|Name=TCONS_00027886|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000653:15089..17404+ (Clytia hemisphaerica)
atgaaaagaCCATGTTTTCCATATCAGTTTTGGATGCAAGATTTACCTTG
GTCAACTGGAGCAAAGgtTAACCCAGATTGGGATGAAACTGATGTTGGTA
TCACAGACTCGCTCAATCAAGCCATAATCTCAATAGCCGAAAAAGAAGCT
CAGTTTCCAATAAATGAAAAGGGTCTTGCTATTCAGAGGAAGATGGGAAA
ATTACTTGAAAATGTGACAGAGGATCTAAAAACAAATCATAAATCTTTCA
AGGATAGTACTTTATACTATACAGGAAGTATGTATGAAGGGTTGAAAATT
GATGCAGTTGACGAATTTGATTTCATGATTGAAATGCCTGTTCTTTCCAA
AGTTGCGGATATATCAATGAAATCTACAAAACAAATGTTGCAATTCGAAT
TAAAGGATTTAAACCCATTCAATGATTCACCAATTGAAAAGGTCAAAGTA
GATGCTGCAAATATACAAGAGTTCTTTGATCGTAAATCAAAATTTGTGAA
GCCTGGAGAAGAATGGATATTCCCTGGAGATGATAGAGAAAGTTGGAACA
TACCTGCAGAATTCAATAACACAGATCCTAGTCATTGGATGAATATGGCA
ATCATCATTAGAGCTTTTGGTTTATTGGTTCAAGAGAAAATACAACATCA
TCTTCCAAGAGAATGGAAATTTATTCCTAATGAATTTGGTTTGGTGACCA
TTGACCATTTTCTTCAACATAAAAGTGCTTTCACTTTTGATATTGTCACt
ggtgaaaatcaaattgtAAATATAGATGTAGATTTATGCTTACCCATTTA
TAATCTACCTTTGCTGATGAATTCTAGTGACCCTGGTGATATTTTACCAG
AGGATTTCAAACAACGATTTAGAGATAACCCATCTATCCATCATGCCATT
ATTCGAAACTCAAATACCCTTCGTATATCTTTGTCttgcaaagaaaaaga
agcCTTTACAAAATTTGACTCAGACGACCCACGTAAATTATGTATGAGAT
TTTTCAAATACCTGCGCAGTAAATTCATAACACACTTGAAATGGCATGAT
GACGCTGCATCTTGTTTAGTTAATTCTTACCacatcaaaacaattttttt
atatttatttgaaatttatcCTGAGCAGTCTTCTTGGAACGGAACAAACT
TTGGTATCAGATTAAAAGTTAAGCATTTCTTGTGTTGAatgaaaagaCCA
TGTTTTCCATATCAGTTTTGGATGCAAGATTTACCTTGGTCAACTGGAGC
AAAGgtTAACCCAGATTGGGATGAAACTGATGTTGGTATCACAGACTCGC
TCAATCAAGCCATAATCTCAATAGCCGAAAAAGAAGCTCAGTTTCCAATA
AATGAAAAGGGTCTTGCTATTCAGAGGAAGATGGGAAAATTACTTGAAAA
TGTGACAGAGGATCTAAAAACAAATCATAAATCTTTCAAGGATAGTACTT
TATACTATACAGGAAGTATGTATGAAGGGTTGAAAATTGATGCAGTTGAC
GAATTTGATTTCATGATTGAAATGCCTGTTCTTTCCAAAGTTGCGGATAT
ATCAATGAAATCTACAAAACAAATGTTGCAATTCGAATTAAAGGATTTAA
ACCCATTCAATGATTCACCAATTGAAAAGGTCAAAGTAGATGCTGCAAAT
ATACAAGAGTTCTTTGATCGTAAATCAAAATTTGTGAAGCCTGGAGAAGA
ATGGATATTCCCTGGAGATGATAGAGAAAGTTGGAACATACCTGCAGAAT
TCAATAACACAGATCCTAGTCATTGGATGAATATGGCAATCATCATTAGA
GCTTTTGGTTTATTGGTTCAAGAGAAAATACAACATCATCTTCCAAGAGA
ATGGAAATTTATTCCTAATGAATTTGGTTTGGTGACCATTGACCATTTTC
TTCAACATAAAAGTGCTTTCACTTTTGATATTGTCACtggtgaaaatcaa
attgtAAATATAGATGTAGATTTATGCTTACCCATTTATAATCTACCTTT
GCTGATGAATTCTAGTGACCCTGGTGATATTTTACCAGAGGATTTCAAAC
AACGATTTAGAGATAACCCATCTATCCATCATGCCATTATTCGAAACTCA
AATACCCTTCGTATATCTTTGTCttgcaaagaaaaagaagcCTTTACAAA
ATTTGACTCAGACGACCCACGTAAATTATGTATGAGATTTTTCAAATACC
TGCGCAGTAAATTCATAACACACTTGAAATGGCATGATGACGCTGCATCT
TGTTTAGTTAATTCTTACCacatcaaaacaatttttttatatttatttga
aatttatcCTGAGCAGTCTTCTTGGAACGGAACAAACTTTGGTATCAGAT
TAAAAGTTAAGCATTTCTTGTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027886-exon-sc0000653-1491911889:15089..15358 | TCONS_00027886-exon-sc0000653-1491911889:15089..15358 | Clytia hemisphaerica | exon |
| TCONS_00027886-exon-sc0000653-1510915933:15089..15358 | TCONS_00027886-exon-sc0000653-1510915933:15089..15358 | Clytia hemisphaerica | exon |
| TCONS_00027886-exon-sc0000653-1575043694:15089..15358 | TCONS_00027886-exon-sc0000653-1575043694:15089..15358 | Clytia hemisphaerica | exon |
| TCONS_00027886-exon-sc0000653-1491911889:15559..17404 | TCONS_00027886-exon-sc0000653-1491911889:15559..17404 | Clytia hemisphaerica | exon |
| TCONS_00027886-exon-sc0000653-1510915933:15559..17404 | TCONS_00027886-exon-sc0000653-1510915933:15559..17404 | Clytia hemisphaerica | exon |
| TCONS_00027886-exon-sc0000653-1575043694:15559..17404 | TCONS_00027886-exon-sc0000653-1575043694:15559..17404 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000653 | supercontig | sc0000653:15089..17404 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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