|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027896 ID=TCONS_00027896|Name=TCONS_00027896|organism=Clytia hemisphaerica|type=transcript|length=2101bpRun BLAST on NCBI protein sequence of TCONS_00027896-protein >TCONS_00027896-protein ID=TCONS_00027896-protein|Name=TCONS_00027896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp MDDSGVDLFGSGLDVNDDVKFNIQNTEDLFSMKPSTGFFGHINRNESTYSRun BLAST on NCBI transcript from alignment at sc0000653:177865..189442+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027896 ID=TCONS_00027896|Name=TCONS_00027896|organism=Clytia hemisphaerica|type=transcript|length=11578bp|location=Sequence derived from alignment at sc0000653:177865..189442+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000653:177865..189442+ >TCONS_00027896 ID=TCONS_00027896|Name=TCONS_00027896|organism=Clytia hemisphaerica|type=CDS|length=15939bp|location=Sequence derived from alignment at sc0000653:177865..189442+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027896 vs. Swiss-Prot (Human)
Match: GCP6 (Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1 SV=3) HSP 1 Score: 212.231 bits (539), Expect = 6.250e-57 Identity = 140/439 (31.89%), Postives = 225/439 (51.25%), Query Frame = 2
Query: 704 PSTGFFGHINRNESTYSKDVRSNLFGGLTSSFTTSLDVSLDIPDLKEQP---SIDISLPTDTKDFYELSSDEGFFEXXXXXXXXXXXXXXXENYIQSLDLLDEALKENPDQKSTLAWESKGSYNERLDNNFLVELGDEAFDRMYKIKMGELEKLTGKRVVETKVSVDK---VFRDTLNVLIGVQSSSYTFLPVSFSLVASKNIHCTGLSSDALHSLMAKFASLGTHYRQLRKFCSQHADRPKTGHSGGSLLKAFIDAMKEILQSYWFAVFSASEMKMVLTELWHLFEPFSKQFKLLADICLCSEAFRRTXXXXXXXXXXXXCNKPKFPVGPALLSYLYSLAVKNSSTEHFRMLLYLFRCTSIPYINFISEWLFHGVCRDQYDEFFVQLDQQYLSYRDKYFWSQGFRM--KESKASVPLFLDGLANQIFSCGKAINLLKL 1996
P+ G F + + +D R +LFG L S T +DV L +P + + + I +P D +E DEGF + ++ + + +DL + AL ++ WE G + +L E G +AFD+ ++ GEL+ L G + + + K + +D LNVLIGV S++++ + + V + +H +G S +++ SL+++ A GT Y +L F Q + +S G + +AF ++ LQ Y V S +LT + LF+ +Q + LA++C T GGG + FP G LLSYLY A+ N S EH+ +LL L + + PY FI +W++ GV RD Y EF +Q++ +YLS+RDK +W+ G+ + KE + VP+FL +A+ I+ CGK INLLKL
Sbjct: 191 PTVGLFSFGDPCGDRFERDTRVSLFGALVHSRTYDMDVRLGLPPVPDNADLSGLAIKVPPSV-DQWE---DEGF----QSASNLTPDSQSEPSVTPDVDLWEAALTYEASKRR--CWERVGCPPGHREEPYLTEAGRDAFDKFCRLHQGELQLLAGGVLQAPQPVLVKECELVKDVLNVLIGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCYTRLSHFSLQPVL--DSLYSKGLVFQAFTSGLRRYLQYYRACVLSTPPTLSLLT-IGFLFKKLGRQLRYLAELCGVGAVLPGTCGGGP---------RAAFPTGVKLLSYLYQEALHNCSNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFRDKLYWTHGYVLISKEVEDCVPVFLKHIAHDIYVCGKTINLLKL 607 The following BLAST results are available for this feature:
BLAST of TCONS_00027896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.