TCONS_00027898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027898
Unique NameTCONS_00027898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027898 ID=TCONS_00027898|Name=TCONS_00027898|organism=Clytia hemisphaerica|type=transcript|length=1808bp
CTTTGATGTTGCatctcaaactttctttcacACTGAAaatcaacaAAAAT
GGAAGTCACTTTCAAGGAAAGAATCGAAGAGTTATTAGTATGTGCTATAT
GTTATGACTGCCTGAAGCAACCAAAAACACTTGATTGTGGTCATATGTTT
TGTCGTATTTGCCTTGAAAGTCATGCTATCAAAAGTGAATGGAAAATTAG
ATGTCCCACTTGTCGTCAAGAACAAAATAgcatcaaaagattttcatgTA
TAGCCCAGCTGGATGCTCCTCTTTATATCAAACAAGCATTAGAACTCATA
CATACTTATAAAGATAATGATTATcctgaagaagaagatgataTAAGCGA
TGATGACTCGAATACTATGAAAGAGAACAATCAACCAGAACCAAATGGTG
TGTCATATCTACTCGAACATTGCTACATATGCGATGAAGATGGGCACTGG
CTTAATAGTTGTCCTCAAAATGATGAAGTTAAAAGTCATgataatgaaaa
attgaaaaatgaagatgacaGTGAAAGAGAACTGCGTGTCGAACTGCCGG
AGGAGCAATTAGTAGACTTTAAGACTGACTCCCATAAAGACGAACATTCT
TCGGGAAGACGAGCAGCCCATGAACCTTATGACGATTTCATTTTAACTCA
AGAGTTTACTTTCGATAAAATTTGTAAGAAAGCTTACAAACgtttaaaga
aacaaaagaaaaaacttatTGGAGGCGATGATGACAGAAAAGGCGACACT
AAAAAAGACTCAAAGAAGAGTTTAGCTACCGTTTTTAGTGAAAGATATTT
GAAATATCAAAGACAGCAGGTTGATTTACCAGAGTATGATTCCAAAACGC
CTGGCCTCAGTAAAACACACTTGAAAGACGCAAGTTCTCCAGGTGGAATA
TCTAGCAAAAGCTCTTCAAATTCATCTGCGGCGAAGAAACCAACTTCAAA
ATCAATGACCGCTGCGGCCTCGGCAACCGGCTCTAAATACAGGCCGAGTT
ATGTACCAGGTAGCTTAAACAAAACACATAAATCGTATACAATGATGGGG
TACGGATTACCATTAAGTGGGCAATTCGGTCAGAGGCAAGGTCCTCGACG
GCGACAGCATCAACAGACCGCTTCATCTGAACAATCTGGCTCATCCGGTT
GTTCAATGGATGATGGCTCCAGTCAGTTCCAAGGTGCTTTTGGTAAAAAC
CCTTTTAGTTGCTCTGGTACTAAACCCAAGGTTTTCGTCGCACTCAAATT
CTGAGCAAGATTATGGTGGAAACATATTACAGAGTGTTTCGAAACAAAGG
AATATACTGTCAAATCCAATTTTTTCGGCGGTTTTTATGAGACACCCTGA
AAACATGTCGAACATTTCTTTTACTGTATATTTTGTATAGTTGTTAATTT
TAGAGTCCAGGAAGACCTTTCCCTCGTAATATCTTCAGATAAAGGATTTT
ATTGGAAATgaattaaattttgaaagtatTCCGAAAACGAGGAATCTAAC
AATTAAACTGAGTTCGATATACGACAGCTGAAATTCTTTCCAGAGGCAAA
AATTCGTGATAAGGAGAAAATTCAATAAATAATCATTTTCTCATAAATTA
TATCGATTATCACcgcaaatctttgtttcctacTCTTTCGATATTTTTCA
CGTATAAGCCTTTTTTAATTTCCATTGGAACTAAATTTAGCTGGCAACGC
TAGAATCCGGAATCCGCGAATTTAGCTTTCACAGTTAAAACGAAAATGGG
ATTGCTGCATGCGGGAAATGGCTTGTTAAAAGTACTTTAAAGTATTTATA
GATAgctt
Run BLAST on NCBI

protein sequence of TCONS_00027898-protein

>TCONS_00027898-protein ID=TCONS_00027898-protein|Name=TCONS_00027898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp
MEVTFKERIEELLVCAICYDCLKQPKTLDCGHMFCRICLESHAIKSEWKI
RCPTCRQEQNSIKRFSCIAQLDAPLYIKQALELIHTYKDNDYPEEEDDIS
DDDSNTMKENNQPEPNGVSYLLEHCYICDEDGHWLNSCPQNDEVKSHDNE
KLKNEDDSERELRVELPEEQLVDFKTDSHKDEHSSGRRAAHEPYDDFILT
QEFTFDKICKKAYKRLKKQKKKLIGGDDDRKGDTKKDSKKSLATVFSERY
LKYQRQQVDLPEYDSKTPGLSKTHLKDASSPGGISSKSSSNSSAAKKPTS
KSMTAAASATGSKYRPSYVPGSLNKTHKSYTMMGYGLPLSGQFGQRQGPR
RRQHQQTASSEQSGSSGCSMDDGSSQFQGAFGKNPFSCSGTKPKVFVALK
F
Run BLAST on NCBI

transcript from alignment at sc0000653:66720..73471-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027898 ID=TCONS_00027898|Name=TCONS_00027898|organism=Clytia hemisphaerica|type=transcript|length=6752bp|location=Sequence derived from alignment at sc0000653:66720..73471- (Clytia hemisphaerica)
CTTTGATGTTGCATCTCAAACTTTCTTTCACACTGAAGTAAGAAATAAGC
CGAGGAAATATTTTTTTCGTAGTCATTCAAGGAATCAATCATCAATTAGC
TACACTGATTTCTAATTCTGGTTGTACACTTTTGGATGAAATTTTGATGG
ACTTTTTTTTTAAATCAGAATCAAGATAAGAATATCAGAAATCATTATTG
TGTGCACAAAATTTCACGTGTTGGCTTTTCTTTCACCTAATTTTTTCATT
TTCCCAGGGGTTGTTGCTAAAATCCTAATTTAAAGATTACAGTAGCGTGT
GTTTGGGTGATCACATCACGCTGTTGAATAGTAACACTCACTTAGCCTAG
GCTTAGGCTAGTAGCTAGCTAGCTAAAAGATAGTCGTTTGGGAGAACCAC
GATTGTCTACTGATTGAATAACAAATTACTCCAGCAGAAATTTTTTTAAT
GGTAACATCACTTTTTTAATTTGTCTTTTACAGCACAGCTAGTTAACTAG
GAACAAAATAATTTATTCTGTTTTGTACCGTCAACACTGCTCTAAATTTT
GGGGCGATTGGTCCAAACATGGGACTGTTGATATATCTGGCCTGTATTTT
TACTTACTGTTAAAATCTCTTTGACAACAATTTTGTTTTGATAACTCCAC
CAAGTTTATCAATCATACTTTCTGTCATAACATGTCACGATAATTTTCAT
TGGGCCATTCCAGTTTTTATTTGTTACCCCCCCCCCAATGGACGACATGG
AATTGTAGCAAATTGCTTTCAAGAAAGTACGACCTTGCCTATGCCCCGGA
CAGTCCGGGGCAAATGTGGGTCTGAAAAAAATAACTTTTTCCCCGGACCT
ATGTCCGGGGCTCCAATTTTTGCGCCATAAATTTACCCCGGACGTATATC
GCCGAGCACACTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGGGCGTC
CGGGGTAGTCTCTCAAAAACAAATAATACGGACCCCGGGCACGCATCAAA
AAAACCCCGGACTGTCCGGGGCATAGGCAGGGTCGTAAGAAAGTTCGGAA
TTTCCGTAACAAATTTACAAAATACCTATCAAAACAGTGGAATTCCGTTA
CTGTACTAAAAAAATCATGGAATTCCAATACTTTAATGCGAAATTAAGTG
AAATTCATGGAATTCCGATACTTTCTCTTTAAAGTTTGCCTGGAATTCCG
TGCCAAAATTTATTTCAAAAATTGATGTCATCCTGTGTCATCCATTAGGG
GGTAATTTTTTTTTCTGGAATGGCCCATTGATAACGTGCGTGCCCTTTTT
AACTTTTTTGTTTTCATTAAAAATGACCGAACGCCGATTGGAGAATTAGA
GAACGCCCGCCTCCTAACCGCCTATTGCCCGATGGGATTAACAAATAACA
AGTGTGCAACTTGCTGCCCGAGTGATGTCAAACGCTCCATTGTTTTGCCA
CTAATATTGTCTTCTTCGTTCCAGACATTAAGGTTTGTTCCACTACAGAT
TTTTTTTCAATTTAAAAGCCTACTTGGTGCGAAAGAGAAATCGTGTATTT
TTTGATACAGCGTTATTAACTCAAATCAAATGACTTTGGAGGTTTCGATG
AAATAGTGCCCGAATTGCCGTCCCATGTTTTGTCAGATAGTCCGAAGTTA
TAGAACAGTTGACAGTACTGGCTGAGGAAAAGTAATGTATTTGCAGTAAT
TTTTTATTCAATAGACCATCGCATTGTTCTCCTAAACGACTATTCCTAGC
CTACAGTATAAATTTTTTAATGATAAAGATCATCTTACAGACCTTTTGAT
AATCATGATGTCATGTTGAATAATTAAAAGCTCTAGTATAAAAACTATGA
CAAGGAAAATTAGTGTTCATTATTCATCAATCCTACTGGCAATTCAGTTA
TTTTTGCGGCATTTTTTTCTTAATTGATTTTTAAGAAACTACTTTTCAGT
TTCTNATCCTACTGGCAATTCAGTTATTTTTGCAGCATTTTTTTCTTAAT
TGATTTTTAAGAAAGTACTTTTCAGTTTCTAATTTAACATTTTCAATGTC
CTCTTATGTCTAAATATAAAGATCTCACACTGCGCTAAACAAGGAAATAA
CTTTACCGGCTTATACTGTGGTATTTGCTGCAGCCATTCAATTATTGTTA
CTACTTCAATTATTCAATATGACATGCTAAATAGCAAAAGGTCTATTGAT
TAGCCTTTAAAAAGACAGCTGTTACCTAGAGAAGAAATAATTCATCATGT
TTGAACTGGCCTGGCAATTGGCCGCGGCAAAAGCTGCCGTAAATTTGATT
ATTCCTTGTTTGCCGCGGCAAAATTTTAATTCAAAATTTTCAACCCACTC
ATGGACCTAAAAATGATGAGAACACAAGTTATTTGTGATCACGGCCAGTC
GTGACCTAAATATGAGGAAAATAAAAATTGAAGTCAGTTTACTGGTCCTA
TTGTTTTTGAAAATTGACATGGTACCTTTTAGCTGCCAAAACGTTTGATT
TTATCTTGCAAGTTACAAAAACTTTGAAGGGAACTAAAACTCTGCCAATT
TTGCAATAAAACTTATTCAAACTGCAAAGCTTACTAAATGACCAGACATC
TTGCCCTTCGGCTCTCTTATCAGACTGCAAAGGATTAATCAATACCCTAC
GATCAGAACATGGAAGCATGTTTTAAGTGATCCCTCAAAATTAACTGACG
CCACGTCTAGGAAAATGTGTCCCTCCATTAAAGAAAATATTTTAAGACAA
AAATTTTCATTATACTTTGGGCATTTGATATTTGATTTGGTGAAAAACTT
TGCGAATCAGCAACGAAATATTTTTGAAGCCATTTAAAATTTTGGGAATT
TAGCTGTAGAAAGCTTTTTTAAAATTTAGAATAAAATTTAGAATTTTCTA
CATATGAAATGATTTGACATGAATGTCTGATATCTTTTAGAATCAATNTT
GAAGCCATTTAAAATTTTGGGAATTTAGCTGTAGAAAGCTTTTTTAAAAT
TTAGAATAAAATTTAGAATTTTCTACATATGAAATGATTTGACATGAATG
TTTGATATTTTTTAGAATCAACAAAAATGGAAGTCACTTTCAAGGAAAGA
ATCGAAGAGTTATTAGTATGTGCTATATGTTATGACTGCCTGAAGCAACC
AAAAACACTTGATTGTGGTCATATGTTTTGTCGTATTTGCCTTGAAAGTC
ATGCTATCAAAAGTGAATGGAAAATTAGATGTCCCACTTGTCGTCAAGAA
CAAAATAGCATCAAAAGATTTTCATGTATAGCCCAGCTGGATGCTCCTCT
TTATATCAAACAAGCATTAGAACTCATACATACTTATAAGTATTAATGTT
AATTGATTTCTATTAATATTTTTTTTATTATCACTTCTTTATATGTACAA
TACCATCATCTGTTATTAATGAATAGTTTATAAGAACATCACGTCTAAAT
AGGATTCTCAAAGGTATGGATAAACTTATATTTGGGATCTACCAAATAAT
TCGTGGCGAGCTAAAAACGTAGTTTGCAATTTTACCCCCTTTATTTTAAA
ACCCATTTAATCAGATTTCTCATCTGATTTTAAGAGGGTAAAACCGTAAA
AGGTAGACATTCATGTTGATTTACAAGTTGTAATATATATGTTTTTAAAG
ATGAAGTGATGATATTTATTCCTTTAATAACAGAATATAAGAATCATGCA
TAACATGGTTTGTTTTATAAGATTTAGTGATATTATCAAGCTTGGGTTTT
CTAGTATCTGTTTCATGGCTCCGTTTATATTTTATGATTACACGAAGAGA
ACTTATTTTGGTGCAAACTAATTTTGTTGAATTTAAAAAATTCGCTAAAA
TTAGTTCTCGCCAGAATTAAAAAGTTTGACTGTCATTCCCCTAAAGCTAA
GTTCTCGTCAAAATTAAAATGTTTTAAGATTTCTGCTGCTGTTCGAATAT
TTGTTGTAGTTTCAAATGTCTATGTCGTGTCTTTTAGGGTCAGAAAATTA
TTCTCCAAAAATTAATTCATTAAAAGCCTACGATTTCATCCCTAAAATTA
TGTGTTTAGTTTGTCAGTAATCTAACGAAGATAATTTGTTTCTTTATAGA
GATAATGATTATCCTGAAGAAGAAGATGATATAAGCGATGATGACTCGAA
TACTATGAAAGGTAACCTACTGTATACGTTTTCTCTCAAGTAAGAACAAA
CTATATCAGAGCATGAGGCTTCGATGGCCAAAATATTAAAAACAAGTTTC
AAGAACATTTTACGGCTTTATGGACTCTAAAACAACCGATTTCTTAGGAA
ATTGGATAAAAATACTCACAAAATCTGACAAAATGGTGAAAATAAGAACA
TTTTATGACCATTTTTAGGCTTAAACCTCAAAAAGATAAGAACATCCGGA
GGTTATTAGAAAAAACGTGTATCCACATAAACCCTTTCATCTATTGAGCC
TGATTTGAAAACATATAACTTCTTGGATACGTGTTTATGGCATATGGCAA
GCATTACTTGAGCCTACGAAAAATGTTTTTTTCCTGATTTTGGCTGGAAT
TTTACGGATTTTCAGTATTTCCCCAAATTTTTGTTTTGGATATAAGCATC
TCAAGCATTTTTTCAGCCTTATTAAGCTTTCAACCTAAGCATCTCTGAGC
CTGTTTTCGGATTTTTGTATGCTTATAAAAAAAACCATGTAGCTGATAAC
ATTACTGAGAATTGTATTTTTCCAAGCCACTTAAGGGGATTTTACAAACA
ATTCCATTTTTCTTCGTTTGATGATCTTCTAGATGGAACAGTAGACAATG
CCTATGATATTAAATGCTAGACTTATTATAACTATCTATAAAATAAGCCG
AAGGAAAATTCGGTAATCGGGCTTCTGCCGAGCAAGTTCAGCGGTGTAAT
TGCTATTGGAACGGTCAAAATTTCTTTTCTGAGTTTGTACCGAAAAAATG
ACATTTTCAAAAATGGCCTAAAAAGGGTCCAAAATTTTCTAACCGACCGC
AAGAGGCTATACGAGACTGTCTCAAATGCCTGGCCCAAATTTAAGTCAAA
TAAAGGGTTTAAAAAAACTTATATCTACAGGACAACATACATGTGTGACC
CAGAAAGCTTTCTTCGCTTGCACTTAATCTCTATTCGAGCTGATTTACTT
TTTACTTTTTTATGTAGAGAACAATCAACCAGAACCAAATGGTGTGTCAT
ATCTACTCGAACATTGCTACATATGCGATGAAGATGGGCACTGGCTTAAT
AGTTGTCCTCAAAATGATGAAGTTAAAAGTCATGATAATGAAAAATTGAA
AAATGAAGATGACAGTGAAAGAGAACTGCGTGTCGAACTGCCGGAGGAGC
AATTAGTAGACTTTAAGACTGACTCCCATAAAGACGAACATTCTTCGGGA
AGACGAGCAGCCCATGAACCTTATGACGATTTCATTTTAACTCAAGAGTT
TACTTTCGATAAAATTTGTAAGAAAGCTTACAAACGTTTAAAGAAACAAA
AGAAAAAACTTATTGGAGGCGATGATGACAGAAAAGGCGACACTAAAAAA
GACTCAAAGAAGAGTTTAGCTACCGTTTTTAGTGAAAGATATTTGAAATA
TCAAAGACAGCAGGTTGATTTACCAGAGTATGATTCCAAAACGCCTGGCC
TCAGTAAAACACACTTGAAAGACGCAAGTTCTCCAGGTGGAATATCTAGC
AAAAGCTCTTCAAATTCATCTGCGGCGAAGAAACCAACTTCAAAATCAAT
GACCGCTGCGGCCTCGGCAACCGGCTCTAAATACAGGCCGAGTTATGTAC
CAGGTAGCTTAAACAAAACACATAAATCGTATACAATGATGGGGTACGGA
TTACCATTAAGTGGGCAATTCGGTCAGAGGCAAGGTCCTCGACGGCGACA
GCATCAACAGACCGCTTCATCTGAACAATCTGGCTCATCCGGTTGTTCAA
TGGATGATGGCTCCAGTCAGTTCCAAGGTGCTTTTGGTAAAAACCCTTTT
AGTTGCTCTGGTACTAAACCCAAGGTTTTCGTCGCACTCAAATTCTGAGC
AAGATTATGGTGGAAACATATTACAGAGTGTTTCGAAACAAAGGAATATA
CTGTCAAATCCAATTTTTTCGGCGGTTTTTATGAGACACCCTGAAAACAT
GTCGAACATTTCTTTTACTGTATATTTTGTATAGTTGTTAATTTTAGAGT
CCAGGAAGACCTTTCCCTCGTAATATCTTCAGATAAAGGATTTTATTGGA
AATGAATTAAATTTTGAAAGTATTCCGAAAACGAGGAATCTAACAATTAA
ACTGAGTTCGATATACGACAGCTGAAATTCTTTCCAGAGGCAAAAATTCG
TGATAAGGAGAAAATTCAATAAATAATCATTTTCTCATAAATTATATCGA
TTATCACCGCAAATCTTTGTTTCCTACTCTTTCGATATTTTTCACGTATA
AGCCTTTTTTAATTTCCATTGGAACTAAATTTAGCTGGCAACGCTAGAAT
CCGGAATCCGCGAATTTAGCTTTCACAGTTAAAACGAAAATGGGATTGCT
GCATGCGGGAAATGGCTTGTTAAAAGTACTTTAAAGTATTTATAGATAGC
TT

Coding sequence (CDS) from alignment at sc0000653:66720..73471-

>TCONS_00027898 ID=TCONS_00027898|Name=TCONS_00027898|organism=Clytia hemisphaerica|type=CDS|length=3618bp|location=Sequence derived from alignment at sc0000653:66720..73471- (Clytia hemisphaerica)
AGAACAATCAACCAGAACCAAATGGTGTGTCATATCTACTCGAACATTGC
TACATATGCGATGAAGATGGGCACTGGCTTAATAGTTGTCCTCAAAATGA
TGAAGTTAAAAGTCATGATAATGAAAAATTGAAAAATGAAGATGACAGTG
AAAGAGAACTGCGTGTCGAACTGCCGGAGGAGCAATTAGTAGACTTTAAG
ACTGACTCCCATAAAGACGAACATTCTTCGGGAAGACGAGCAGCCCATGA
ACCTTATGACGATTTCATTTTAACTCAAGAGTTTACTTTCGATAAAATTT
GTAAGAAAGCTTACAAACGTTTAAAGAAACAAAAGAAAAAACTTATTGGA
GGCGATGATGACAGAAAAGGCGACACTAAAAAAGACTCAAAGAAGAGTTT
AGCTACCGTTTTTAGTGAAAGATATTTGAAATATCAAAGACAGCAGGTTG
ATTTACCAGAGTATGATTCCAAAACGCCTGGCCTCAGTAAAACACACTTG
AAAGACGCAAGTTCTCCAGGTGGAATATCTAGCAAAAGCTCTTCAAATTC
ATCTGCGGCGAAGAAACCAACTTCAAAATCAATGACCGCTGCGGCCTCGG
CAACCGGCTCTAAATACAGGCCGAGTTATGTACCAGGTAGCTTAAACAAA
ACACATAAATCGTATACAATGATGGGGTACGGATTACCATTAAGTGGGCA
ATTCGGTCAGAGGCAAGGTCCTCGACGGCGACAGCATCAACAGACCGCTT
CATCTGAACAATCTGGCTCATCCGGTTGTTCAATGGATGATGGCTCCAGT
CAGTTCCAAGGTGCTTTTGGTAAAAACCCTTTTAGTTGCTCTGGTACTAA
ACCCAAGGTTTTCGTCGCACTCAAATTCTGAAGATAATGATTATCCTGAA
GAAGAAGATGATATAAGCGATGATGACTCGAATACTATGAAAGATGGAAG
TCACTTTCAAGGAAAGAATCGAAGAGTTATTAGTATGTGCTATATGTTAT
GACTGCCTGAAGCAACCAAAAACACTTGATTGTGGTCATATGTTTTGTCG
TATTTGCCTTGAAAGTCATGCTATCAAAAGTGAATGGAAAATTAGATGTC
CCACTTGTCGTCAAGAACAAAATAGCATCAAAAGATTTTCATGTATAGCC
CAGCTGGATGCTCCTCTTTATATCAAACAAGCATTAGAACTCATACATAC
TTATAAAGAACAATCAACCAGAACCAAATGGTGTGTCATATCTACTCGAA
CATTGCTACATATGCGATGAAGATGGGCACTGGCTTAATAGTTGTCCTCA
AAATGATGAAGTTAAAAGTCATGATAATGAAAAATTGAAAAATGAAGATG
ACAGTGAAAGAGAACTGCGTGTCGAACTGCCGGAGGAGCAATTAGTAGAC
TTTAAGACTGACTCCCATAAAGACGAACATTCTTCGGGAAGACGAGCAGC
CCATGAACCTTATGACGATTTCATTTTAACTCAAGAGTTTACTTTCGATA
AAATTTGTAAGAAAGCTTACAAACGTTTAAAGAAACAAAAGAAAAAACTT
ATTGGAGGCGATGATGACAGAAAAGGCGACACTAAAAAAGACTCAAAGAA
GAGTTTAGCTACCGTTTTTAGTGAAAGATATTTGAAATATCAAAGACAGC
AGGTTGATTTACCAGAGTATGATTCCAAAACGCCTGGCCTCAGTAAAACA
CACTTGAAAGACGCAAGTTCTCCAGGTGGAATATCTAGCAAAAGCTCTTC
AAATTCATCTGCGGCGAAGAAACCAACTTCAAAATCAATGACCGCTGCGG
CCTCGGCAACCGGCTCTAAATACAGGCCGAGTTATGTACCAGGTAGCTTA
AACAAAACACATAAATCGTATACAATGATGGGGTACGGATTACCATTAAG
TGGGCAATTCGGTCAGAGGCAAGGTCCTCGACGGCGACAGCATCAACAGA
CCGCTTCATCTGAACAATCTGGCTCATCCGGTTGTTCAATGGATGATGGC
TCCAGTCAGTTCCAAGGTGCTTTTGGTAAAAACCCTTTTAGTTGCTCTGG
TACTAAACCCAAGGTTTTCGTCGCACTCAAATTCTGAAGATAATGATTAT
CCTGAAGAAGAAGATGATATAAGCGATGATGACTCGAATACTATGAAAGA
TGGAAGTCACTTTCAAGGAAAGAATCGAAGAGTTATTAGTATGTGCTATA
TGTTATGACTGCCTGAAGCAACCAAAAACACTTGATTGTGGTCATATGTT
TTGTCGTATTTGCCTTGAAAGTCATGCTATCAAAAGTGAATGGAAAATTA
GATGTCCCACTTGTCGTCAAGAACAAAATAGCATCAAAAGATTTTCATGT
ATAGCCCAGCTGGATGCTCCTCTTTATATCAAACAAGCATTAGAACTCAT
ACATACTTATAAAGAACAATCAACCAGAACCAAATGGTGTGTCATATCTA
CTCGAACATTGCTACATATGCGATGAAGATGGGCACTGGCTTAATAGTTG
TCCTCAAAATGATGAAGTTAAAAGTCATGATAATGAAAAATTGAAAAATG
AAGATGACAGTGAAAGAGAACTGCGTGTCGAACTGCCGGAGGAGCAATTA
GTAGACTTTAAGACTGACTCCCATAAAGACGAACATTCTTCGGGAAGACG
AGCAGCCCATGAACCTTATGACGATTTCATTTTAACTCAAGAGTTTACTT
TCGATAAAATTTGTAAGAAAGCTTACAAACGTTTAAAGAAACAAAAGAAA
AAACTTATTGGAGGCGATGATGACAGAAAAGGCGACACTAAAAAAGACTC
AAAGAAGAGTTTAGCTACCGTTTTTAGTGAAAGATATTTGAAATATCAAA
GACAGCAGGTTGATTTACCAGAGTATGATTCCAAAACGCCTGGCCTCAGT
AAAACACACTTGAAAGACGCAAGTTCTCCAGGTGGAATATCTAGCAAAAG
CTCTTCAAATTCATCTGCGGCGAAGAAACCAACTTCAAAATCAATGACCG
CTGCGGCCTCGGCAACCGGCTCTAAATACAGGCCGAGTTATGTACCAGGT
AGCTTAAACAAAACACATAAATCGTATACAATGATGGGGTACGGATTACC
ATTAAGTGGGCAATTCGGTCAGAGGCAAGGTCCTCGACGGCGACAGCATC
AACAGACCGCTTCATCTGAACAATCTGGCTCATCCGGTTGTTCAATGGAT
GATGGCTCCAGTCAGTTCCAAGGTGCTTTTGGTAAAAACCCTTTTAGTTG
CTCTGGTACTAAACCCAAGGTTTTCGTCGCACTCAAATTCTGAAGATAAT
GATTATCCTGAAGAAGAAGATGATATAAGCGATGATGACTCGAATACTAT
GAAAGATGGAAGTCACTTTCAAGGAAAGAATCGAAGAGTTATTAGTATGT
GCTATATGTTATGACTGCCTGAAGCAACCAAAAACACTTGATTGTGGTCA
TATGTTTTGTCGTATTTGCCTTGAAAGTCATGCTATCAAAAGTGAATGGA
AAATTAGATGTCCCACTTGTCGTCAAGAACAAAATAGCATCAAAAGATTT
TCATGTATAGCCCAGCTGGATGCTCCTCTTTATATCAAACAAGCATTAGA
ACTCATACATACTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015768XLOC_015768Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027898-proteinTCONS_00027898-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027898-exon-sc0000653-1575043694:73435..73471TCONS_00027898-exon-sc0000653-1575043694:73435..73471Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1575043694:69983..70256TCONS_00027898-exon-sc0000653-1575043694:69983..70256Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1575043694:69161..69222TCONS_00027898-exon-sc0000653-1575043694:69161..69222Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1575043694:66720..68154TCONS_00027898-exon-sc0000653-1575043694:66720..68154Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1510915933:73435..73471TCONS_00027898-exon-sc0000653-1510915933:73435..73471Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1510915933:69983..70256TCONS_00027898-exon-sc0000653-1510915933:69983..70256Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1510915933:69161..69222TCONS_00027898-exon-sc0000653-1510915933:69161..69222Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1510915933:66720..68154TCONS_00027898-exon-sc0000653-1510915933:66720..68154Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1491911889:73435..73471TCONS_00027898-exon-sc0000653-1491911889:73435..73471Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1491911889:69983..70256TCONS_00027898-exon-sc0000653-1491911889:69983..70256Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1491911889:69161..69222TCONS_00027898-exon-sc0000653-1491911889:69161..69222Clytia hemisphaericaexon
TCONS_00027898-exon-sc0000653-1491911889:66720..68154TCONS_00027898-exon-sc0000653-1491911889:66720..68154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:66720..73471 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.12687	3.54835	3.56729	3.24426	2.21416	1.84423	3.59421	3.52509	3.92636	4.63184	7.59786	4.18181	9.94567	7.55495	2.72133	5.04311	3.74761	5.95809	10.1655	12.0689	8.47358	8.22437	4.01947	5.15763	9.62396	11.353	11.5	10.1952	7.56029	6.84967
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001878Znf_CCHC
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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