TCONS_00027901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027901
Unique NameTCONS_00027901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027901 ID=TCONS_00027901|Name=TCONS_00027901|organism=Clytia hemisphaerica|type=transcript|length=566bp
GCCAAAAAGATCGACTCCACTGTCATCCATTGACAATGCTTTCTGATCCA
GTTGAAAAAGAGTATCAGATGGCAGGTAATCTtctctattgaaaaacaat
CGCTTGGTTTTACTCTTTGAGGTGTCATAACTTGCTAGCAGCTTGAAAAG
TTTTAACATATTATTaatattttcattctttttctccGCTAAAGTTGTTA
TTAATGATCGTAAACGCTCTGCTTTCTCGTGATGACCCGACATATCCAAC
TCAAAACAATCTCTAGCTAAATCGCTATAAATGTTTAAAGAGTTGGCGGG
ATTACTGTTGCCAATGCTCTGTTTATCATCATAGTCTCTGGGTGTTGGTA
AAATTATAGGCGAATGCAATGTCACAAACAATTTTCTGTAGAGTGtcttt
ttcaatatttccaCGTGACCAGGCTTAAAgtcttgtttgaaaataagaGT
AGTTTTTGGATCATTGCTCTTCTTCAGACAGTGGATGCACAGGCTTTTAA
AAAACTGGGGAATAGAATCCCCAACCACATTAACTGAACCTTCTCCCAAA
AGAGATTCTTCCATTG
Run BLAST on NCBI

transcript from alignment at sc0000653:177865..178498-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027901 ID=TCONS_00027901|Name=TCONS_00027901|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000653:177865..178498- (Clytia hemisphaerica)
GCCAAAAAGATCGACTCCACTGTCATCCATTGACAATGCTTTCTGATCCA
GTTGAAAAAGAGTATCAGATGGCAGGTAATCTTCTCTATTGAAAAGCAAT
CTNATGCTTTCTGATCCAGTTGAAAAAGAGTATCAGATGGCAGGTAATCT
TCTCTATTGAAAAACAATCGCTTGGTTTTACTCTTTGAGGTGTCATAACT
TGCTAGCAGCTTGAAAAGTTTTAACATATTATTAATATTTTCATTCTTTT
TCTCCGCTAAAGTTGTTATTAATGATCGTAAACGCTCTGCTTTCTCGTGA
TGACCCGACATATCCAACTCAAAACAATCTCTAGCTAAATCGCTATAAAT
GTTTAAAGAGTTGGCGGGATTACTGTTGCCAATGCTCTGTTTATCATCAT
AGTCTCTGGGTGTTGGTAAAATTATAGGCGAATGCAATGTCACAAACAAT
TTTCTGTAGAGTGTCTTTTTCAATATTTCCACGTGACCAGGCTTAAAGTC
TTGTTTGAAAATAAGAGTAGTTTTTGGATCATTGCTCTTCTTCAGACAGT
GGATGCACAGGCTTTTAAAAAACTGGGGAATAGAATCCCCAACCACATTA
ACTGAACCTTCTCCCAAAAGAGATTCTTCCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015770XLOC_015770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027901-exon-sc0000653-1575043694:178424..178498TCONS_00027901-exon-sc0000653-1575043694:178424..178498Clytia hemisphaericaexon
TCONS_00027901-exon-sc0000653-1575043694:177865..178355TCONS_00027901-exon-sc0000653-1575043694:177865..178355Clytia hemisphaericaexon
TCONS_00027901-exon-sc0000653-1510915933:178424..178498TCONS_00027901-exon-sc0000653-1510915933:178424..178498Clytia hemisphaericaexon
TCONS_00027901-exon-sc0000653-1510915933:177865..178355TCONS_00027901-exon-sc0000653-1510915933:177865..178355Clytia hemisphaericaexon
TCONS_00027901-exon-sc0000653-1491911889:178424..178498TCONS_00027901-exon-sc0000653-1491911889:178424..178498Clytia hemisphaericaexon
TCONS_00027901-exon-sc0000653-1491911889:177865..178355TCONS_00027901-exon-sc0000653-1491911889:177865..178355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:177865..178498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.382839	1.16012	0	5.61673	6.84099	4.37981	6.43407	0.667318	0.865077	0	0	0	0	0.985321	0.651987	3.26785	0.24975	1.44151	0	0	0	1.35167	0	3.62082	6.99554	0	0	0	0.000226006
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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