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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027910 ID=TCONS_00027910|Name=TCONS_00027910|organism=Clytia hemisphaerica|type=transcript|length=1084bp
CATTGACACAGTGTTCCAACAGATTTACGTTACATTCTCATTTCGGATAC
CATCTCTCTGTAAAAAGTATCTCAATTTTAAAAGGACAGAAAAATCTCAG
TACATTTTCTTCATAAAAGATCCAATAGAGAAAAGGTTCTTTCTCAGGAA
AACAGCTCGGTTCAAAGTGATTGGCAAGATTTCTGCTCGATTCGTTACAA
ACTTGATCACTGGAATAAAAATTATGTCCGAAAAGGTCAGTGCAATTTAG
AtttgaattattgaaaaatgagaaatacATATCTGCATGGGGACCGTCAA
ACTTGGTAGAAGTTGTTGCATTCGTGCCATATACGAAAGCATCCTTGAGA
GATAATTTTCCAATAGTAGGGTCAAAATAAGCTTTTACGTAAACAATTTT
ATACATAAGATGATCAACTCTATCGTACAAGTTCACTTCGATTATTATAT
TTTGATGAGCCTCAATTCCCATATTTAGAAAGCCGAGACAGAACTGTGAG
TAAACATTACCGAATCCGTATAAGAAGTCTTCCTTTGAATCACCCAGGAG
CTTATCAATTACAGTACGTCGATAGAGCAACGTAAATTTACCGTGGCAAT
AAATGTTTAGATacctttctttctttctatCATTATATTTTCTCAATGAA
GTAAGAACACCTTCATCAGTTTTTAATATAACGCCTTTCTGCATCGCATC
CATGCAAGAATGAACCGGAGTAGCATCAAAAAACGAGTTTAGCGTAGTAC
GATTCTTCTTCGTTGCAGCAAACAATACGTGTCCAGGTTTTTTAGTGATC
CGGCCATATCGTACTTGAAACAAGATGTTCGCTCTAAAGCGTACACAAGT
TTTATTCTCAGATTTATAGAGAGCTGAACGACATGATGGTTTACAAGACA
TAACGCATAGTTGTAAACACTCTTCAGGGCTACGAACATTATCTTCATCC
TTGGAGTGTCGACTGGTGTATACGCCATCAATTCTCATAAACCCTTTCGC
TGTAGTGACCGATAAGAGGATTACGTAAACATATACCATACTAAATAACA
ATTTACAAGGCTTTGATGGATTTACTTGAGAATA Run BLAST on NCBI protein sequence of TCONS_00027910-protein >TCONS_00027910-protein ID=TCONS_00027910-protein|Name=TCONS_00027910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
YSQVNPSKPCKLLFSMVYVYVILLSVTTAKGFMRIDGVYTSRHSKDEDNV
RSPEECLQLCVMSCKPSCRSALYKSENKTCVRFRANILFQVRYGRITKKP
GHVLFAATKKNRTTLNSFFDATPVHSCMDAMQKGVILKTDEGVLTSLRKY
NDRKKERYLNIYCHGKFTLLYRRTVIDKLLGDSKEDFLYGFGNVYSQFCL
GFLNMGIEAHQNIIIEVNLYDRVDHLMYKIVYVKAYFDPTIGKLSLKDAF
VYGTNATTSTKFDGPHADMYFSFFNNSNLNCTDLFGHNFYSSDQVCNESS
RNLANHFEPSCFPEKEPFLYWIFYEENVLRFFCPFKIEILFTERWYPK Run BLAST on NCBI transcript from alignment at sc0000653:110739..111822 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027910 ID=TCONS_00027910|Name=TCONS_00027910|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at sc0000653:110739..111822 (Clytia hemisphaerica)
TATTCTCAAGTAAATCCATCAAAGCCTTGTAAATTGTTATTTAGTATGGT
ATATGTTTACGTAATCCTCTTATCGGTCACTACAGCGAAAGGGTTTATGA
GAATTGATGGCGTATACACCAGTCGACACTCCAAGGATGAAGATAATGTT
CGTAGCCCTGAAGAGTGTTTACAACTATGCGTTATGTCTTGTAAACCATC
ATGTCGTTCAGCTCTCTATAAATCTGAGAATAAAACTTGTGTACGCTTTA
GAGCGAACATCTTGTTTCAAGTACGATATGGCCGGATCACTAAAAAACCT
GGACACGTATTGTTTGCTGCAACGAAGAAGAATCGTACTACGCTAAACTC
GTTTTTTGATGCTACTCCGGTTCATTCTTGCATGGATGCGATGCAGAAAG
GCGTTATATTAAAAACTGATGAAGGTGTTCTTACTTCATTGAGAAAATAT
AATGatagaaagaaagaaaggtATCTAAACATTTATTGCCACGGTAAATT
TACGTTGCTCTATCGACGTACTGTAATTGATAAGCTCCTGGGTGATTCAA
AGGAAGACTTCTTATACGGATTCGGTAATGTTTACTCACAGTTCTGTCTC
GGCTTTCTAAATATGGGAATTGAGGCTCATCAAAATATAATAATCGAAGT
GAACTTGTACGATAGAGTTGATCATCTTATGTATAAAATTGTTTACGTAA
AAGCTTATTTTGACCCTACTATTGGAAAATTATCTCTCAAGGATGCTTTC
GTATATGGCACGAATGCAACAACTTCTACCAAGTTTGACGGTCCCCATGC
AGATATgtatttctcatttttcaataattcaaaTCTAAATTGCACTGACC
TTTTCGGACATAATTTTTATTCCAGTGATCAAGTTTGTAACGAATCGAGC
AGAAATCTTGCCAATCACTTTGAACCGAGCTGTTTTCCTGAGAAAGAACC
TTTTCTCTATTGGATCTTTTATGAAGAAAATGTACTGAGATTTTTCTGTC
CTTTTAAAATTGAGATACTTTTTACAGAGAGATGGTATCCGAAATGAGAA
TGTAACGTAAATCTGTTGGAACACTGTGTCAATG Coding sequence (CDS) from alignment at sc0000653:110739..111822 >TCONS_00027910 ID=TCONS_00027910|Name=TCONS_00027910|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at sc0000653:110739..111822 (Clytia hemisphaerica)
TATTCTCAAGTAAATCCATCAAAGCCTTGTAAATTGTTATTTAGTATGGT
ATATGTTTACGTAATCCTCTTATCGGTCACTACAGCGAAAGGGTTTATGA
GAATTGATGGCGTATACACCAGTCGACACTCCAAGGATGAAGATAATGTT
CGTAGCCCTGAAGAGTGTTTACAACTATGCGTTATGTCTTGTAAACCATC
ATGTCGTTCAGCTCTCTATAAATCTGAGAATAAAACTTGTGTACGCTTTA
GAGCGAACATCTTGTTTCAAGTACGATATGGCCGGATCACTAAAAAACCT
GGACACGTATTGTTTGCTGCAACGAAGAAGAATCGTACTACGCTAAACTC
GTTTTTTGATGCTACTCCGGTTCATTCTTGCATGGATGCGATGCAGAAAG
GCGTTATATTAAAAACTGATGAAGGTGTTCTTACTTCATTGAGAAAATAT
AATGatagaaagaaagaaaggtATCTAAACATTTATTGCCACGGTAAATT
TACGTTGCTCTATCGACGTACTGTAATTGATAAGCTCCTGGGTGATTCAA
AGGAAGACTTCTTATACGGATTCGGTAATGTTTACTCACAGTTCTGTCTC
GGCTTTCTAAATATGGGAATTGAGGCTCATCAAAATATAATAATCGAAGT
GAACTTGTACGATAGAGTTGATCATCTTATGTATAAAATTGTTTACGTAA
AAGCTTATTTTGACCCTACTATTGGAAAATTATCTCTCAAGGATGCTTTC
GTATATGGCACGAATGCAACAACTTCTACCAAGTTTGACGGTCCCCATGC
AGATATgtatttctcatttttcaataattcaaaTCTAAATTGCACTGACC
TTTTCGGACATAATTTTTATTCCAGTGATCAAGTTTGTAACGAATCGAGC
AGAAATCTTGCCAATCACTTTGAACCGAGCTGTTTTCCTGAGAAAGAACC
TTTTCTCTATTGGATCTTTTATGAAGAAAATGTACTGAGATTTTTCTGTC
CTTTTAAAATTGAGATACTTTTTACAGAGAGATGGTATCCGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027910-exon-sc0000653-1491911889:110739..111822 | TCONS_00027910-exon-sc0000653-1491911889:110739..111822 | Clytia hemisphaerica | exon |
| TCONS_00027910-exon-sc0000653-1510915933:110739..111822 | TCONS_00027910-exon-sc0000653-1510915933:110739..111822 | Clytia hemisphaerica | exon |
| TCONS_00027910-exon-sc0000653-1575043694:110739..111822 | TCONS_00027910-exon-sc0000653-1575043694:110739..111822 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000653 | supercontig | sc0000653:110739..111822 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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