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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027914 ID=TCONS_00027914|Name=TCONS_00027914|organism=Clytia hemisphaerica|type=transcript|length=811bp
AGCATATTGAAGCCCCAAAAGGAAAATCTTGGATGAGATGCAAATCTATA
AAACCATTTTCCTTTGTCGTCAATTTCGGCAAATTTGattaaatgtttca
atttttcagcaaaactCTCTGTTTCACTTTTTGCTATTTCCCTCATGATT
GCAGGATTAGTTGGGTCACCTTTTGTGTCTGGAAACAATGTTGGAAATGC
AAGACTTGCTAAGTAGGGTGTATTGAATTCACTAAGTGGAGTACTTCCTA
TATCAACTTCAGTTTTTGtattcaaaatttcactttttgttaAGTCAGCT
TCCTTTGCTTTTTTTAGTTTAGATGGTaagaaacttttcatttcagtgtt
ttcatcaaaaacaagttcATTGTTATCATCATTAACTGGACCTAAATCTG
Gtaattcttcattttcactgacatcttcatttttgttgtcactttcattt
tcttcacCGCTCTCAATATCATTTTTCTCATTCATTTGTACATGCAAGTC
TGGTAAGTCAATGAATCCATTTTCAGGCAGCTTTTGTAGCCTTTCCATAT
CTATATTGATTTCACTATATAGAAAATTATTAGGATCACCTTGTTCATTT
TTTCCTGTCAGCCATAATAATGCCTGTAAAATCTTTTCACGTCTTACGAC
AAGTTCTTTTGAGGTATTATTTTTcccatttattttaaaaatcattataG
GAATGTCGCTGGGCTCTCGTGGTAGGACATCTGCAATTTTTTGAACATTA
TGAGGCAAATTTAAAACGTGACCTTTATAAGCTCTCTGACCTCCTCTTGG
TCGGGTATANN Run BLAST on NCBI protein sequence of TCONS_00027914-protein >TCONS_00027914-protein ID=TCONS_00027914-protein|Name=TCONS_00027914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
YTRPRGGQRAYKGHVLNLPHNVQKIADVLPREPSDIPIMIFKINGKNNTS
KELVVRREKILQALLWLTGKNEQGDPNNFLYSEINIDMERLQKLPENGFI
DLPDLHVQMNEKNDIESGEENESDNKNEDVSENEELPDLGPVNDDNNELV
FDENTEMKSFLPSKLKKAKEADLTKSEILNTKTEVDIGSTPLSEFNTPYL
ASLAFPTLFPDTKGDPTNPAIMREIAKSETESFAEKLKHLIKFAEIDDKG
KWFYRFASHPRFSFWGFNM Run BLAST on NCBI transcript from alignment at sc0000653:193331..194141 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027914 ID=TCONS_00027914|Name=TCONS_00027914|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0000653:193331..194141 (Clytia hemisphaerica)
NNTATACCCGACCAAGAGGAGGTCAGAGAGCTTATAAAGGTCACGTTTTA
AATTTGCCTCATAATGTTCAAAAAATTGCAGATGTCCTACCACGAGAGCC
CAGCGACATTCCtataatgatttttaaaataaatgggAAAAATAATACCT
CAAAAGAACTTGTCGTAAGACGTGAAAAGATTTTACAGGCATTATTATGG
CTGACAGGAAAAAATGAACAAGGTGATCCTAATAATTTTCTATATAGTGA
AATCAATATAGATATGGAAAGGCTACAAAAGCTGCCTGAAAATGGATTCA
TTGACTTACCAGACTTGCATGTACAAATGAATGAGAAAAATGATATTGAG
AGCGgtgaagaaaatgaaagtgacaacaaaaatgaagatgtcagtgaaaa
tgaagaattaCCAGATTTAGGTCCAGTTAATGATGATAACAATgaacttg
tttttgatgaaaacactgaaatgaaaagtttcttACCATCTAAACTAAAA
AAAGCAAAGGAAGCTGACTtaacaaaaagtgaaattttgaataCAAAAAC
TGAAGTTGATATAGGAAGTACTCCACTTAGTGAATTCAATACACCCTACT
TAGCAAGTCTTGCATTTCCAACATTGTTTCCAGACACAAAAGGTGACCCA
ACTAATCCTGCAATCATGAGGGAAATAGCAAAAAGTGAAACAGAGagttt
tgctgaaaaattgaaacatttaatCAAATTTGCCGAAATTGACGACAAAG
GAAAATGGTTTTATAGATTTGCATCTCATCCAAGATTTTCCTTTTGGGGC
TTCAATATGCT Coding sequence (CDS) from alignment at sc0000653:193331..194141 >TCONS_00027914 ID=TCONS_00027914|Name=TCONS_00027914|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0000653:193331..194141 (Clytia hemisphaerica)
TATACCCGACCAAGAGGAGGTCAGAGAGCTTATAAAGGTCACGTTTTAAA
TTTGCCTCATAATGTTCAAAAAATTGCAGATGTCCTACCACGAGAGCCCA
GCGACATTCCtataatgatttttaaaataaatgggAAAAATAATACCTCA
AAAGAACTTGTCGTAAGACGTGAAAAGATTTTACAGGCATTATTATGGCT
GACAGGAAAAAATGAACAAGGTGATCCTAATAATTTTCTATATAGTGAAA
TCAATATAGATATGGAAAGGCTACAAAAGCTGCCTGAAAATGGATTCATT
GACTTACCAGACTTGCATGTACAAATGAATGAGAAAAATGATATTGAGAG
CGgtgaagaaaatgaaagtgacaacaaaaatgaagatgtcagtgaaaatg
aagaattaCCAGATTTAGGTCCAGTTAATGATGATAACAATgaacttgtt
tttgatgaaaacactgaaatgaaaagtttcttACCATCTAAACTAAAAAA
AGCAAAGGAAGCTGACTtaacaaaaagtgaaattttgaataCAAAAACTG
AAGTTGATATAGGAAGTACTCCACTTAGTGAATTCAATACACCCTACTTA
GCAAGTCTTGCATTTCCAACATTGTTTCCAGACACAAAAGGTGACCCAAC
TAATCCTGCAATCATGAGGGAAATAGCAAAAAGTGAAACAGAGagttttg
ctgaaaaattgaaacatttaatCAAATTTGCCGAAATTGACGACAAAGGA
AAATGGTTTTATAGATTTGCATCTCATCCAAGATTTTCCTTTTGGGGCTT
CAATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027914-exon-sc0000653-1491911889:193331..194141 | TCONS_00027914-exon-sc0000653-1491911889:193331..194141 | Clytia hemisphaerica | exon |
| TCONS_00027914-exon-sc0000653-1510915933:193331..194141 | TCONS_00027914-exon-sc0000653-1510915933:193331..194141 | Clytia hemisphaerica | exon |
| TCONS_00027914-exon-sc0000653-1575043694:193331..194141 | TCONS_00027914-exon-sc0000653-1575043694:193331..194141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000653 | supercontig | sc0000653:193331..194141 . |
Blast
The following BLAST results are available for this feature:
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