|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027915 ID=TCONS_00027915|Name=TCONS_00027915|organism=Clytia hemisphaerica|type=transcript|length=716bp
GGAATTGTGAGTGTTAGTTGAGAGTATATGTTTACGTGTACGTGTATGTT
CAGCCACAGTGTTTTTAccattttccACCAGGAAGATGCGTCAAAGAAAA
CCTATGGCTTCGTTAAAGTGTCGTTCGTGACTTATGTTGACTCCTATTCG
ACTCGATCGGCATTTACACAGAGGTTTTAGAATTTTCGGGAGATTTTACA
TTGAAGTATACGAGttattttccagtattttaaaTTTGAATGTTATATGA
TTAACAAATATTTATTCTACTTAAATGTTCTCCTGAAGCCCATTCCATCC
ATTAGTAGTGTTCACGTTTTATTGACATAAAAATACTTCATAAACGACCA
TCACACAGACTTCAACTTTTGCTTCATTTTGATAACAAACGTCAATTGAA
TGGTCTTGAGAAATGCAATTTGAGTCACCCCGATGAAATTGGCCATGTCT
ATAATAAAAGTCCACACATTGATCAAACCAATCGTTCCAACATTGGCTGA
AAAGAGTTGGTGAAGATGTTGCTCGTCCATTGCCAATGCAATATACACTT
GCTTGCTCTTTACAGACGGCTTCAATTGCTTGAGTTGGATAGTTAATTAC
TGTAGCATCGACAAGAAGACATGATACAAATAGCAGAAAAACTAaattca
gttttaaagacattttATTTCCGTTTTATCTTTTAGGAAGAATCGTCCTT
TTTCATTGAACTCCAG Run BLAST on NCBI transcript from alignment at sc0000657:11016..11864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027915 ID=TCONS_00027915|Name=TCONS_00027915|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at sc0000657:11016..11864+ (Clytia hemisphaerica)
GGAATTGTGAGTGTTAGTTGAGAGTATATGTTTACGTGTACGTGTATGTT
CAGCCACAGTGTTTTTAGTAAGtttctatttcttcttttatatgtTATAT
CTTTGACTTGTCTTTGTAATCTAACTGATGTATCTTTATATTTTGACTTG
CACTGTATTTATATTTCGTTAGCTAAACgtgttattttattcaattttag
ccattttccACCAGGAAGATGCGTCAAAGAAAACCTATGGCTTCGTTAAA
GTGTCGTTCGTGACTTATGTTGACTCCTATTCGACTCGATCGGCATTTAC
ACAGAGGTTTTAGAATTTTCGGGAGATTTTACATTGAAGTATACGAGtta
ttttccagtattttaaaTTTGAATGTTATATGATTAACAAATATTTATTC
TACTTAAATGTTCTCCTGAAGCCCATTCCATCCATTAGTAGTGTTCACGT
TTTATTGACATAAAAATACTTCATAAACGACCATCACACAGACTTCAACT
TTTGCTTCATTTTGATAACAAACGTCAATTGAATGGTCTTGAGAAATGCA
ATTTGAGTCACCCCGATGAAATTGGCCATGTCTATAATAAAAGTCCACAC
ATTGATCAAACCAATCGTTCCAACATTGGCTGAAAAGAGTTGGTGAAGAT
GTTGCTCGTCCATTGCCAATGCAATATACACTTGCTTGCTCTTTACAGAC
GGCTTCAATTGCTTGAGTTGGATAGTTAATTACTGTAGCATCGACAAGAA
GACATGATACAAATAGCAGAAAAACTAaattcagttttaaagacattttA
TTTCCGTTTTATCTTTTAGGAAGAATCGTCCTTTTTCATTGAACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027915-exon-sc0000657-1491911889:11016..11082 | TCONS_00027915-exon-sc0000657-1491911889:11016..11082 | Clytia hemisphaerica | exon |
| TCONS_00027915-exon-sc0000657-1510915933:11016..11082 | TCONS_00027915-exon-sc0000657-1510915933:11016..11082 | Clytia hemisphaerica | exon |
| TCONS_00027915-exon-sc0000657-1575043694:11016..11082 | TCONS_00027915-exon-sc0000657-1575043694:11016..11082 | Clytia hemisphaerica | exon |
| TCONS_00027915-exon-sc0000657-1491911889:11216..11864 | TCONS_00027915-exon-sc0000657-1491911889:11216..11864 | Clytia hemisphaerica | exon |
| TCONS_00027915-exon-sc0000657-1510915933:11216..11864 | TCONS_00027915-exon-sc0000657-1510915933:11216..11864 | Clytia hemisphaerica | exon |
| TCONS_00027915-exon-sc0000657-1575043694:11216..11864 | TCONS_00027915-exon-sc0000657-1575043694:11216..11864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000657 | supercontig | sc0000657:11016..11864 + |
Blast
The following BLAST results are available for this feature:
|
