TCONS_00027916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027916
Unique NameTCONS_00027916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027916 ID=TCONS_00027916|Name=TCONS_00027916|organism=Clytia hemisphaerica|type=transcript|length=636bp
CTCAAAAGAAAAGTCTGGGTTAGACTGTCCATCATTTGTATCTGTTGATT
GTTTGTCATCAAGATTCTTCACACGAGAAGCattttgttcaacattATCA
GAGTCTGTATCTGCAGTATCTTCATTTACAGGTTTCTCTTGTTGACAGTC
AGTATCCAAATATTTTTGTGAACGTTGAACGAGTTTACAAGCCTCGGTGT
CGTCTCCAGGAATGTTGTTTACATCACAAGAGACCGTTAATTCTGAGTCA
ATAGTATTTGGAGCCCCCTCTAAACTCGTTATAGTCTTATCCTCGTCATT
ACATCGTTTCGGCAAGTCATTTATATTATCAgttttttccaatatttcag
TTTCGGTTTTCGCTTCAATATCCTCTCTCTCGCTAGCACCATCATCCTTG
GCAGAAACAACATTACCATCTGGTACAGCATGTTCAAGATCTATTCCATC
CACATCCTCGCGCATTTCATCGATCTCAACCTTCAGCTTCCCTGACTCTT
CTGATTCTATTTCTCCAGTGACGTCATTAGCAGTGCTATCATCGGCCACT
TTCCGAGGACTTGCAAGCTCTTTGCAACACCTGCGGTGGTGTGAGATACA
TTCGATTTCTGGCAAAATACCTCCGTCCCATACGCC
Run BLAST on NCBI

transcript from alignment at sc0000657:55058..55760+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027916 ID=TCONS_00027916|Name=TCONS_00027916|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0000657:55058..55760+ (Clytia hemisphaerica)
CTCAAAAGAAAAGTCTGGGTTAGACTGTCCATCATTTGTATCTGTTGATT
GTTTGTCATCAAGATTCTTCACACGAGAAGCATTTTGTTCCACGNCCATC
ATTTGTATTTGCTGATTGTTTGTCATCAAGATCCTCCACACGagaaacat
tttgttcaacattATCAGAGTCTGTATCTGCAGTATCTTCATTTACAGGT
TTCTCTTGTTGACAGTCAGTATCCAAATATTTTTGTGAACGTTGAACGAG
TTTACAAGCCTCGGTGTCGTCTCCAGGAATGTTGTTTACATCACAAGAGA
CCGTTAATTCTGAGTCAATAGTATTTGGAGCCCCCTCTAAACTCGTTATA
GTCTTATCCTCGTCATTACATCGTTTCGGCAAGTCATTTATATTATCAgt
tttttccaatatttcagTTTCGGTTTTCGCTTCAATATCCTCTCTCTCGC
TAGCACCATCATCCTTGGCAGAAACAACATTACCATCTGGTACAGCATGT
TCAAGATCTATTCCATCCACATCCTCGCGCATTTCATCGATCTCAACCTT
CAGCTTCCCTGACTCTTCTGATTCTATTTCTCCAGTGACGTCATTAGCAG
TGCTATCATCGGCCACTTTCCGAGGACTTGCAAGCTCTTTGCAACACCTG
CGGTGGTGTGAGATACATTCGATTTCTGGCAAAATACCTCCGTCCCATAC
GCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015784XLOC_015784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027916-exon-sc0000657-1491911889:55058..55138TCONS_00027916-exon-sc0000657-1491911889:55058..55138Clytia hemisphaericaexon
TCONS_00027916-exon-sc0000657-1510915933:55058..55138TCONS_00027916-exon-sc0000657-1510915933:55058..55138Clytia hemisphaericaexon
TCONS_00027916-exon-sc0000657-1575043694:55058..55138TCONS_00027916-exon-sc0000657-1575043694:55058..55138Clytia hemisphaericaexon
TCONS_00027916-exon-sc0000657-1491911889:55206..55760TCONS_00027916-exon-sc0000657-1491911889:55206..55760Clytia hemisphaericaexon
TCONS_00027916-exon-sc0000657-1510915933:55206..55760TCONS_00027916-exon-sc0000657-1510915933:55206..55760Clytia hemisphaericaexon
TCONS_00027916-exon-sc0000657-1575043694:55206..55760TCONS_00027916-exon-sc0000657-1575043694:55206..55760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000657supercontigsc0000657:55058..55760 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0232607	0	0	0	0	0.115526	0	0	0	0	0	0	0	0	0	0	0	0	0.0896512	0	0	0	0.389403	0	0	0.406541	0.0108849	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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