TCONS_00027925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027925
Unique NameTCONS_00027925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027925 ID=TCONS_00027925|Name=TCONS_00027925|organism=Clytia hemisphaerica|type=transcript|length=1443bp
CTCTTTTACATATATTTcatctttttaatggttttacgactttctttttt
atttgtcTAGAATATCAACATGCAAATCTCAACGGGCTTATCTAAACATT
ATTCTTTGCACGAACTAGTTGATTGATATAAAAAAGCCAACAATTGAGTC
AATATTTAAAAGCGCAAATAGTTTGATATCAAAGCATGTTCAATCAGTCT
AACTGAAGAACGTCGAAGGATTCAAACGCATTCAACGAGAAGAGAGAGAA
TCTCTTGGACTTCATATACAACAAACTTTTTAGCTGCAAACACTTTCATA
TCACAGCTTCTACCAAAATGGGTGAAGTCGGAGGAGCCATTTGTGGAGGA
GTATGTGTATTGTTGGTCTTATCTGCAATCCCAATTGCCATGATTGTTCT
AGGTACTCAACATATGGATGATTGTCCGATGGAGCCGTGGATTCCCAAGT
GTATGGTGATCGGTGGTGGTGCCACCCTGGTTCTCATGGTGGTCATCTTA
CTACTCCTTGTCTGTGGAGCCATGGATAATAAAGGCGCCTCAACATTTGC
TGTCGTTCTTGCTGTTATACTAGCCCTGTTTTTGTTCGCTTGGCAAATTG
CTTCATCCTATTGGGTGTTTAAAGAATGGTCTGGTTGGGATAAAGTCAAA
GATGACATTTCCAGAGGATGTCATAAAGATACTTATTTGTTTATCttctc
tattttgatcatttACTGGGTGACTTGTCCATGCCAAGGAAGTGGAGCTA
AATTGAGAGATTAAAACAAGactatttattatttttatcttaATGGTGTC
AAAACAATCATCTCACAGAGCCGGTAAGGTTTTTCGGCCaataatggggg
ggggggggggggaaattttggACTGAATTGGGAACTGGAAATTGGAATTG
GAATTTCATTGTTtccaagtcagaaaattcagtgggtatgaacatgaaca
tataaacgactggacatccatctcctttgtctttgtGAATATAAcacagc
tagcttcgttgccgcctcgttaaaagcataaaatgaaacaatagattttc
atgatataccacttgggaataccttgctaacaacgtcaaaactttgacaa
aagtctctgttgttctactcttttcaattattttatctatatcataacaa
agataacagaggcaaaatcaacgtcagcaaaactccgactaacatttcta
aattttgacttaaaagtgtctaataattttaaagagtgtcacattctaat
ttcgatattcttattacacaggctctcaactttggcaagctatttttttc
aagtcataaaaaaaatattggagtgacaaaagggattcaaaagtatatat
acacgcagttgaaattcctgcatttcagagttgaaaatgttgataaaata
tattacaaacttgtaaaaaaattcgaaaataattttattgtac
Run BLAST on NCBI

protein sequence of TCONS_00027925-protein

>TCONS_00027925-protein ID=TCONS_00027925-protein|Name=TCONS_00027925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MGEVGGAICGGVCVLLVLSAIPIAMIVLGTQHMDDCPMEPWIPKCMVIGG
GATLVLMVVILLLLVCGAMDNKGASTFAVVLAVILALFLFAWQIASSYWV
FKEWSGWDKVKDDISRGCHKDTYLFIFSILIIYWVTCPCQGSGAKLRD
Run BLAST on NCBI

transcript from alignment at sc0000657:23639..26599-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027925 ID=TCONS_00027925|Name=TCONS_00027925|organism=Clytia hemisphaerica|type=transcript|length=2961bp|location=Sequence derived from alignment at sc0000657:23639..26599- (Clytia hemisphaerica)
CTCTTTTACATATATTTCATCTTTTTAATGGTTTTACGACTTTCTTTTTT
ATTTGTCTAGAATATCAACATGCAAATCTCAACGGGCTTATCTAAACATT
ATTCTTTGCACGAACTAGTTGATTGATATAAAAAAGCCAACAATTGAGTC
AATATTTAAAAGCGCAAATAGTTTGATATCAAAGCATGTTCAATCAGTCT
AACTGAAGAACGTCGAAGGATTCAAACGCATTCAACGAGAAGAGAGAGAA
TCTCTTGGACTTCATATACAACAAACTTTTTAGCTGCAAACACTTTCATA
TCACAGCTTCTACCAAAATGGGTGAAGTCGGAGGTACGTACAATGTTCTA
AATTTGTTTTTAGGGATATATGGTATATGTCTCAATTGTCCCAAATATTG
TTGTTAAAACAGCTAATTTTTCTAGTTCATTACTCTTAATTAAACAATTC
ACAGAGCTAGGCCTTCCAGATCTTACAATTTCATTGCATTGTTTCAGCTT
TACCCCAGGTTGTGGGATTTTAGAGCTCATTGAGTTAAATTTTATATTTT
CATGAATTTTTGAGTACGCAAAATTTAATATTCGTTTTCTAGGAGCCATT
TGTGGAGGAGTATGTGTATTGTTGGTCTTATCTGCAATCCCAATTGCCAT
GATTGTTCTAGGTAAGTAAGTCTTCTTGGTTACTCGAATAAGGGGTCTAC
AGTATATTTAATTTCTGATTCCAGGGTGGGGGGGTACTAGGGCAAAATAG
GCTACGCTGGTCAGGGTACCTTATTTAACCTCCACGAGTCCCAGGTAGGA
TTGCAAAAACACCAAAATAGAAAAATCAGTCCCTGGCAGGGTGCCTTTTT
TGGAAAATTTGGGGAAAAAGTAGAACATTTTAGAAAAGTTGTGGAATTTC
AGTACCATTCAGGGTCACTATTTTCGCAAATTTCGTCCAAATATTTTCTC
TCTTTTTGGCTAAATATTGCCAATATAAGGTGTAAATGAAAAGCAAAAAG
CGTCGACATTTGTAATCAGAGGCGTCTTTTTTTCACCCTTTGTATTTCGA
GTCAGGCAGGCAGGGGCAATGCCCTTGCCACAGTGCTACTTGTCGGACCT
TATTCAGAATTGATTCCATAATAGTTTATTTTGTTTGCGTGAAATTGCAC
CATTGACGAGATATATTGAATAAGCAGAAAGTGAAAAATGTAGTTTTTAA
CACACCCCTTTTTTATCCGAGTTAATCTGCTTACAGACTAAATATATCGC
TTTATGACCCTTTATAGACGTGTCAAAATAAAACGTAACCTTTAGTTGTT
TACACATTTCTTATAAGAACATCTGAAATTTTGGAGGCCTTCGGATGTTC
CTAATTTTTTCAGTTTTCAGTCTAAAAAGTGTTTGAAACTGTTGATATTT
CACCATTTTGTGAGTATTTCTGTGCCATTTACTTAAAAAATTTGGTATTT
TAGAGCTTTGAAAAAGCTTGTAGTTTGTTGTTGATATTTCGAACATCNTT
TCTGTGCCATTTACTTAAATAATTTGGTATTTTAGAGCTTTGAAAAAGCT
TGTAGTTTGTTGTTGATATTTCGAACATCGAAGCCCCCTCGAAGCCTTGT
GTTCTAAAATTGTTTGCTCTTATATGAAAATGTGTCATTAGAAAATGAAG
ACTTGTGCCTCCCTCCTTCCCTTACGCTGCACTCGCTTTTTTTTACCAGT
TTTTTAATAAGATCTTTTTTTTTTAATTCAAATCGTTTCAAAAGTTGTTC
TCCGAGATATACACTAAAGAGCCTCAGCATGGTAGATTCTACCCCCTCCC
TGTGGCTAGTAGGGTTAATCTAAGGATGCAGGATTCACCGAGCTAAATCT
TAGGGATGCAACAACTAACTAGCTATCCAGACGGATTTTTCATTTTCAAC
TACTTTCTTCCCTTTGACAGGTACTCAACATATGGATGATTGTCCGATGG
AGCCGTGGATTCCCAAGTGTATGGTGATCGGTGGTGGTGCCACCCTGGTT
CTCATGGTGGTCATCTTACTACTCCTTGTCTGTGGAGCCATGGATAATAA
AGGCGCCTCAACATTTGCTGTCGTTCTTGCTGTTATACTAGCCCTGTTTT
TGTTCGCTTGGCAAATTGCTTCATCCTATTGGGTGTTTAAAGAATGGTCT
GGTTGGGATAAAGTCAAAGATGACATTTCCAGAGGATGTCATAAAGATAC
TTATTTGTTTATCTTCTCTATTTTGATCATTTACTGGGTGACTTGTCCAT
GCCAAGGAAGTGGAGCTAAATTGAGAGATTAAAACAAGACTATTTATTAT
TTTTATCTTAATGGTGTCAAAACAATCATCTCACAGAGCCGGTAAGGTTT
TTCGGCCAATAATGGGGGGGGGGGGGGGGGAAATTTTGGACTGAATTGGG
AACTGGAAATTGGAATTGGAATTTCATTGTTTCCAAGTCAGAAAATTCAG
TGGGTATGAACATGAACATATAAACGACTGGACATCCATCTCCTTTGTCT
TTGTGAATATAACACAGCTAGCTTCGTTGCCGCCTCGTTAAAAGCATAAA
ATGAAACAATAGATTTTCATGATATACCACTTGGGAATACCTTGCTAACA
ACGTCAAAACTTTGACAAAAGTCTCTGTTGTTCTACTCTTTTCAATTATT
TTATCTATATCATAACAAAGATAACAGAGGCAAAATCAACGTCAGCAAAA
CTCCGACTAACATTTCTAAATTTTGACTTAAAAGTGTCTAATAATTTTAA
AGAGTGTCACATTCTAATTTCGATATTCTTATTACACAGGCTCTCAACTT
TGGCAAGCTATTTTTTTCAAGTCATAAAAAAAATATTGGAGTGACAAAAG
GGATTCAAAAGTATATATACACGCAGTTGAAATTCCTGCATTTCAGAGTT
GAAAATGTTGATAAAATATATTACAAACTTGTAAAAAAATTCGAAAATAA
TTTTATTGTAC

Coding sequence (CDS) from alignment at sc0000657:23639..26599-

>TCONS_00027925 ID=TCONS_00027925|Name=TCONS_00027925|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at sc0000657:23639..26599- (Clytia hemisphaerica)
GTACTCAACATATGGATGATTGTCCGATGGAGCCGTGGATTCCCAAGTGT
ATGGTGATCGGTGGTGGTGCCACCCTGGTTCTCATGGTGGTCATCTTACT
ACTCCTTGTCTGTGGAGCCATGGATAATAAAGGCGCCTCAACATTTGCTG
TCGTTCTTGCTGTTATACTAGCCCTGTTTTTGTTCGCTTGGCAAATTGCT
TCATCCTATTGGGTGTTTAAAGAATGGTCTGGTTGGGATAAAGTCAAAGA
TGACATTTCCAGAGGATGTCATAAAGATACTTATTTGTTTATCTTCTCTA
TTTTGATCATTTACTGGGTGACTTGTCCATGCCAAGGAAGTGGAGCTAAA
TTGAGAGATTAAGAGCCATTTGTGGAGGAGTATGTGTATTGTTGGTCTTA
TCTGCAATCCCAATTGCCATGATTGTTCTAGATGGGTGAAGTCGGAGGTA
CTCAACATATGGATGATTGTCCGATGGAGCCGTGGATTCCCAAGTGTATG
GTGATCGGTGGTGGTGCCACCCTGGTTCTCATGGTGGTCATCTTACTACT
CCTTGTCTGTGGAGCCATGGATAATAAAGGCGCCTCAACATTTGCTGTCG
TTCTTGCTGTTATACTAGCCCTGTTTTTGTTCGCTTGGCAAATTGCTTCA
TCCTATTGGGTGTTTAAAGAATGGTCTGGTTGGGATAAAGTCAAAGATGA
CATTTCCAGAGGATGTCATAAAGATACTTATTTGTTTATCTTCTCTATTT
TGATCATTTACTGGGTGACTTGTCCATGCCAAGGAAGTGGAGCTAAATTG
AGAGATTAAGAGCCATTTGTGGAGGAGTATGTGTATTGTTGGTCTTATCT
GCAATCCCAATTGCCATGATTGTTCTAGATGGGTGAAGTCGGAGGTACTC
AACATATGGATGATTGTCCGATGGAGCCGTGGATTCCCAAGTGTATGGTG
ATCGGTGGTGGTGCCACCCTGGTTCTCATGGTGGTCATCTTACTACTCCT
TGTCTGTGGAGCCATGGATAATAAAGGCGCCTCAACATTTGCTGTCGTTC
TTGCTGTTATACTAGCCCTGTTTTTGTTCGCTTGGCAAATTGCTTCATCC
TATTGGGTGTTTAAAGAATGGTCTGGTTGGGATAAAGTCAAAGATGACAT
TTCCAGAGGATGTCATAAAGATACTTATTTGTTTATCTTCTCTATTTTGA
TCATTTACTGGGTGACTTGTCCATGCCAAGGAAGTGGAGCTAAATTGAGA
GATTAAGAGCCATTTGTGGAGGAGTATGTGTATTGTTGGTCTTATCTGCA
ATCCCAATTGCCATGATTGTTCTAGATGGGTGAAGTCGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015789XLOC_015789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027925-proteinTCONS_00027925-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027925-exon-sc0000657-1575043694:26267..26599TCONS_00027925-exon-sc0000657-1575043694:26267..26599Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1575043694:25939..26007TCONS_00027925-exon-sc0000657-1575043694:25939..26007Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1575043694:23639..24679TCONS_00027925-exon-sc0000657-1575043694:23639..24679Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1510915933:26267..26599TCONS_00027925-exon-sc0000657-1510915933:26267..26599Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1510915933:25939..26007TCONS_00027925-exon-sc0000657-1510915933:25939..26007Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1510915933:23639..24679TCONS_00027925-exon-sc0000657-1510915933:23639..24679Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1491911889:26267..26599TCONS_00027925-exon-sc0000657-1491911889:26267..26599Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1491911889:25939..26007TCONS_00027925-exon-sc0000657-1491911889:25939..26007Clytia hemisphaericaexon
TCONS_00027925-exon-sc0000657-1491911889:23639..24679TCONS_00027925-exon-sc0000657-1491911889:23639..24679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000657supercontigsc0000657:23639..26599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
859.47	887.398	1248.2	1445.99	47.0905	39.8661	110.227	124.09	151.192	124.389	87.5646	90.4627	45.3121	35.4798	6.70076	7.56664	59.7525	71.4501	59.3329	64.7876	28.7855	25.7353	425.902	341.245	18.5572	17.6066	38.7947	42.629	186.751	217.843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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