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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027951 ID=TCONS_00027951|Name=TCONS_00027951|organism=Clytia hemisphaerica|type=transcript|length=1788bp
CAATGGATAAGGTCGTCCAAACTGAGAATCTAAAAGATACTTTTGTTTAC
GTTGATAACATTACTATTGCCGGTCGATCCAAAGAAGAGCATGATCAAAA
CGTCAAGAATTTTCATGCCGCTAGAGAAAAGTACAACCTTACGTTGAACC
CAGATAAAACTATCTCAAGTACCCAGTCAATCACGCTCCTTGGATACATT
GTTAGTAATAACTCGATATCTCCAGATCAACGTCGCCTTCAACCTTTACT
TGATATGCCACCACCTACTAATCTAAAGTCACAGAAACGCGTCATAGGAA
TGTTCTCGTACTACAGTAAATTCATTGATAAATTTTCAGAGAAAATTCGT
ACACTCAACAAGAATACAATATTTCCAGTTCCAAAACCAGTTTTAGACGC
ATTCAATGTACTCAAGGAGGACTTGAAAAATGCAACTCTTCAACCTATCG
ATCCAGAAACACCCTTCGTCGTAGAGACAGATGCAAGTGACTTTTGTATT
GCTGCTACGCTAAACCAAAACGGCCGTCCAGTTGCTTTCTTTTCACGGAC
ACTTAAAAACAATGAAATTAAACACGACTCTGTTGAAAAGGAAGCCGCAG
CCATCGTAGAATCCATTCGTGATTGGAGACATTTCTTAATTGGACGCAAA
TTCAAGCTTATAACCGATCAAAGAAGTATTAGTTTCATGTTTGATAACCG
TAGACGATCCAAGATTAAAAACGCCAAAATTGCTAGATGGCGTCTAGAAC
TTTCTCAGTACAAATACGACATATCGTACAGACCAGGAAGTGAGAATCTC
GTAGCTGACACCTTTTCCAGGATAGCCGCAATGTGTCACCCCCTCCAAGA
ACTACGTAATCTTCATGAACAACTCTGTCATCCTGGCATCACAAGATTAT
CACACTTCGTTCGTCAGCGAAACCTACCATTCTCCCAGGAACAAATTAAG
ACAGTCACAAATACTTGTAAATCATGTATGTTCCACAAACCAAAGTTCTT
AAATTCTCAAGGAACATTAATCAACGCTACAGCACCTTTTCAAAAACTGA
ACATCGATTTTAAAGGACCACTCCCACCTTCGAAAAGGGGAAATCGTTTT
CTTCTAACATTGATTGATGAGTACTCTCGTTTTCCATTCGCATTTCCGTG
CAAAGACACCAAAAGTTCAACCGTCAATCAGTGCTTCAACAACCTCTTCT
CCATGTTCGGTATGCCCGAGATGGTTCACAATGACCGAGGAACAGATTTC
TTATCCGAGGAAACGCAATCGTACTTGCTGAGTAAATCAATTGCCACCTC
GAAAACAATCCAAAAGGTAACGGTCAAGTTGAGAGACTGAACGGGACGTT
ATGGAAAGCTATACAAGTCACCTTAGATTCTCGCAACTTAAAACAGTCAG
ATTGGGAAGACGTTCTTCCCGACGCACTACACTCAATCCGATCGCTACTT
TGCACCACCACCAACGAAACACCCCATGAGAGAATGTTTAATTACACTCG
CAAATCAACTTCAGGACGCTCAATTCCATCATGGGTTAAGCCAGGACCCA
TCTACATTCGAAATCAACCAAGAAAGAGTAAAAATGATCCCATTGTCACG
TCAGCTACTTTCATTCATGCTAATCCAGAGTATGCACACGTTCGCCTTCA
ATCTGGAGTTGAAACGACTGTATATCTTCGAGATATTGCCCAACACCCAG
AAACATTAAGGGACTTTGAACCAGTTCAGAACACACGAACGGACATCTTG
AACTCTGAGGTACTTGCTGAAGAGTCCTTTCCTGAAAC Run BLAST on NCBI protein sequence of TCONS_00027951-protein >TCONS_00027951-protein ID=TCONS_00027951-protein|Name=TCONS_00027951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MDKVVQTENLKDTFVYVDNITIAGRSKEEHDQNVKNFHAAREKYNLTLNP
DKTISSTQSITLLGYIVSNNSISPDQRRLQPLLDMPPPTNLKSQKRVIGM
FSYYSKFIDKFSEKIRTLNKNTIFPVPKPVLDAFNVLKEDLKNATLQPID
PETPFVVETDASDFCIAATLNQNGRPVAFFSRTLKNNEIKHDSVEKEAAA
IVESIRDWRHFLIGRKFKLITDQRSISFMFDNRRRSKIKNAKIARWRLEL
SQYKYDISYRPGSENLVADTFSRIAAMCHPLQELRNLHEQLCHPGITRLS
HFVRQRNLPFSQEQIKTVTNTCKSCMFHKPKFLNSQGTLINATAPFQKLN
IDFKGPLPPSKRGNRFLLTLIDEYSRFPFAFPCKDTKSSTVNQCFNNLFS
MFGMPEMVHNDRGTDFLSEETQSYLLSKSIATSKTIQKVTVKLRD Run BLAST on NCBI transcript from alignment at sc0000658:78885..80672 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027951 ID=TCONS_00027951|Name=TCONS_00027951|organism=Clytia hemisphaerica|type=transcript|length=1788bp|location=Sequence derived from alignment at sc0000658:78885..80672 (Clytia hemisphaerica)
GTTTCAGGAAAGGACTCTTCAGCAAGTACCTCAGAGTTCAAGATGTCCGT
TCGTGTGTTCTGAACTGGTTCAAAGTCCCTTAATGTTTCTGGGTGTTGGG
CAATATCTCGAAGATATACAGTCGTTTCAACTCCAGATTGAAGGCGAACG
TGTGCATACTCTGGATTAGCATGAATGAAAGTAGCTGACGTGACAATGGG
ATCATTTTTACTCTTTCTTGGTTGATTTCGAATGTAGATGGGTCCTGGCT
TAACCCATGATGGAATTGAGCGTCCTGAAGTTGATTTGCGAGTGTAATTA
AACATTCTCTCATGGGGTGTTTCGTTGGTGGTGGTGCAAAGTAGCGATCG
GATTGAGTGTAGTGCGTCGGGAAGAACGTCTTCCCAATCTGACTGTTTTA
AGTTGCGAGAATCTAAGGTGACTTGTATAGCTTTCCATAACGTCCCGTTC
AGTCTCTCAACTTGACCGTTACCTTTTGGATTGTTTTCGAGGTGGCAATT
GATTTACTCAGCAAGTACGATTGCGTTTCCTCGGATAAGAAATCTGTTCC
TCGGTCATTGTGAACCATCTCGGGCATACCGAACATGGAGAAGAGGTTGT
TGAAGCACTGATTGACGGTTGAACTTTTGGTGTCTTTGCACGGAAATGCG
AATGGAAAACGAGAGTACTCATCAATCAATGTTAGAAGAAAACGATTTCC
CCTTTTCGAAGGTGGGAGTGGTCCTTTAAAATCGATGTTCAGTTTTTGAA
AAGGTGCTGTAGCGTTGATTAATGTTCCTTGAGAATTTAAGAACTTTGGT
TTGTGGAACATACATGATTTACAAGTATTTGTGACTGTCTTAATTTGTTC
CTGGGAGAATGGTAGGTTTCGCTGACGAACGAAGTGTGATAATCTTGTGA
TGCCAGGATGACAGAGTTGTTCATGAAGATTACGTAGTTCTTGGAGGGGG
TGACACATTGCGGCTATCCTGGAAAAGGTGTCAGCTACGAGATTCTCACT
TCCTGGTCTGTACGATATGTCGTATTTGTACTGAGAAAGTTCTAGACGCC
ATCTAGCAATTTTGGCGTTTTTAATCTTGGATCGTCTACGGTTATCAAAC
ATGAAACTAATACTTCTTTGATCGGTTATAAGCTTGAATTTGCGTCCAAT
TAAGAAATGTCTCCAATCACGAATGGATTCTACGATGGCTGCGGCTTCCT
TTTCAACAGAGTCGTGTTTAATTTCATTGTTTTTAAGTGTCCGTGAAAAG
AAAGCAACTGGACGGCCGTTTTGGTTTAGCGTAGCAGCAATACAAAAGTC
ACTTGCATCTGTCTCTACGACGAAGGGTGTTTCTGGATCGATAGGTTGAA
GAGTTGCATTTTTCAAGTCCTCCTTGAGTACATTGAATGCGTCTAAAACT
GGTTTTGGAACTGGAAATATTGTATTCTTGTTGAGTGTACGAATTTTCTC
TGAAAATTTATCAATGAATTTACTGTAGTACGAGAACATTCCTATGACGC
GTTTCTGTGACTTTAGATTAGTAGGTGGTGGCATATCAAGTAAAGGTTGA
AGGCGACGTTGATCTGGAGATATCGAGTTATTACTAACAATGTATCCAAG
GAGCGTGATTGACTGGGTACTTGAGATAGTTTTATCTGGGTTCAACGTAA
GGTTGTACTTTTCTCTAGCGGCATGAAAATTCTTGACGTTTTGATCATGC
TCTTCTTTGGATCGACCGGCAATAGTAATGTTATCAACGTAAACAAAAGT
ATCTTTTAGATTCTCAGTTTGGACGACCTTATCCATTG Coding sequence (CDS) from alignment at sc0000658:78885..80672 >TCONS_00027951 ID=TCONS_00027951|Name=TCONS_00027951|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000658:78885..80672 (Clytia hemisphaerica)
TCAGTCTCTCAACTTGACCGTTACCTTTTGGATTGTTTTCGAGGTGGCAA
TTGATTTACTCAGCAAGTACGATTGCGTTTCCTCGGATAAGAAATCTGTT
CCTCGGTCATTGTGAACCATCTCGGGCATACCGAACATGGAGAAGAGGTT
GTTGAAGCACTGATTGACGGTTGAACTTTTGGTGTCTTTGCACGGAAATG
CGAATGGAAAACGAGAGTACTCATCAATCAATGTTAGAAGAAAACGATTT
CCCCTTTTCGAAGGTGGGAGTGGTCCTTTAAAATCGATGTTCAGTTTTTG
AAAAGGTGCTGTAGCGTTGATTAATGTTCCTTGAGAATTTAAGAACTTTG
GTTTGTGGAACATACATGATTTACAAGTATTTGTGACTGTCTTAATTTGT
TCCTGGGAGAATGGTAGGTTTCGCTGACGAACGAAGTGTGATAATCTTGT
GATGCCAGGATGACAGAGTTGTTCATGAAGATTACGTAGTTCTTGGAGGG
GGTGACACATTGCGGCTATCCTGGAAAAGGTGTCAGCTACGAGATTCTCA
CTTCCTGGTCTGTACGATATGTCGTATTTGTACTGAGAAAGTTCTAGACG
CCATCTAGCAATTTTGGCGTTTTTAATCTTGGATCGTCTACGGTTATCAA
ACATGAAACTAATACTTCTTTGATCGGTTATAAGCTTGAATTTGCGTCCA
ATTAAGAAATGTCTCCAATCACGAATGGATTCTACGATGGCTGCGGCTTC
CTTTTCAACAGAGTCGTGTTTAATTTCATTGTTTTTAAGTGTCCGTGAAA
AGAAAGCAACTGGACGGCCGTTTTGGTTTAGCGTAGCAGCAATACAAAAG
TCACTTGCATCTGTCTCTACGACGAAGGGTGTTTCTGGATCGATAGGTTG
AAGAGTTGCATTTTTCAAGTCCTCCTTGAGTACATTGAATGCGTCTAAAA
CTGGTTTTGGAACTGGAAATATTGTATTCTTGTTGAGTGTACGAATTTTC
TCTGAAAATTTATCAATGAATTTACTGTAGTACGAGAACATTCCTATGAC
GCGTTTCTGTGACTTTAGATTAGTAGGTGGTGGCATATCAAGTAAAGGTT
GAAGGCGACGTTGATCTGGAGATATCGAGTTATTACTAACAATGTATCCA
AGGAGCGTGATTGACTGGGTACTTGAGATAGTTTTATCTGGGTTCAACGT
AAGGTTGTACTTTTCTCTAGCGGCATGAAAATTCTTGACGTTTTGATCAT
GCTCTTCTTTGGATCGACCGGCAATAGTAATGTTATCAACGTAAACAAAA
GTATCTTTTAGATTCTCAGTTTGGACGACCTTATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027951-exon-sc0000658-1491911889:78885..80672 | TCONS_00027951-exon-sc0000658-1491911889:78885..80672 | Clytia hemisphaerica | exon |
| TCONS_00027951-exon-sc0000658-1510915933:78885..80672 | TCONS_00027951-exon-sc0000658-1510915933:78885..80672 | Clytia hemisphaerica | exon |
| TCONS_00027951-exon-sc0000658-1575043694:78885..80672 | TCONS_00027951-exon-sc0000658-1575043694:78885..80672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000658 | supercontig | sc0000658:78885..80672 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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