|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027955 ID=TCONS_00027955|Name=TCONS_00027955|organism=Clytia hemisphaerica|type=transcript|length=2224bp
ACTATTATGGTTTACACCATATGCTGCTAGCTTTGCGATAAGTAAATCAG
GGGGTAGACAATCATAAGCTTTAGATAAATCCATGAGTACAGTACCCACA
ATATTTGAATCGTCAAGTGCCCTTTGCCAGAAATGTAATAATCGCAATAT
AGCATGCTGTGTACTGTGCCCTTTTCTGAAGCCACAAAGTAACTCTGAGA
AgcagtttttttagaaaaggatTTAACTGTTGggcaatgattttttcaaa
tacttTGGATACTGTAGGAAGTATGCTAATAGGTCTGTAGTTTTTAACAC
TCGTTGGATCGCCTTCTTTGAAGACTGGGGTTATTGTGGCCCGCTTTAAG
CTTTCAGGAAAAAGTGCTTGGTTAAGACAAGAGTTAAAGCAGTTCTTGAG
TACAAAAGAACAGATATTAGCAGACTTTTGGATGAGTTTTGAGCTTACAT
CCCCAGATGTAGATTTATTACAATTTAATGACATAATCAATTCATGGACA
GTTTCATTGTCAGTATTTGTAAATTCAAAGGAATTATCACCAAAAATGTT
TCTGATTTTTATGATACTAGGATGGTCTAAATATCTTGTAATAGCATTGA
GCACCGGATCACCAATGACCTGCTCAGTGTATTGCGGCCATTCGTAAATA
TCCAGTGTCTTGGTTATGCCATTAAAGTAATTATTGAAAGGTTGAGCAGT
AGTAATATCACTATTTACAATTTCATCTTTATCAACTAAGATAATCTTTT
CCGAAACGGTATGCTTATCTGAAAAAAAAGGGTTTGCATATTTCCCAAAA
ATTTTGTCCAGAATTTCCGGGATTTGAGGCAACcgttttgaaatagtttt
tcttaatttttcgattcaAGCTACAAACATAGTTTCGCTGTTTATGATAG
GCACGCATATCTGAAAAACTGTTGGATCGATGATAGATGTTACGAAGTCT
TGACCTTTCCATGATGGCTTTTCGAAGGGTCCTGTTTATGTGGGGTTTTT
CATTCCCACGAATCATCCTTGTTTTTCGAGGTCCATGCCTATCTAAAACA
TCTACGAATTTGTTCTCAAAATCAtcaatttcatttatatttgaTGATGT
CATTTGTAAAGATAGATCtgtcaaaaaattcttttcgacAAAATCATTAT
AGCATCGATAATTTGCTTTACGCGGTGGTAATCTAGTATATCTACTTTTG
AGCTGAGTGTATATTAAGTGGTGAAAATCACTAAGACCGGTGTCCCAGGT
ACCTGTCTTCTGCAACCCATATTTTTGGTTTGAAAGTATTAAATCAATGc
gacttccttcaacttttttgaagcaagtttttgttttaatgtGACAATAT
AATGAATTTTCTTCCAGAAAGTTATTTAAGATTGGGTTTGTTGGTTCGCA
GTTGAAGTCACCAATCAACATACATCGCTCAAAATTGGAATAAAAGTCTA
ATAAATCAGATAATAATTGGAAAAAAGATTCTAGCTTCTGTGAGTGATAT
ctgtataaaaacaaaattagccACTTGTGAGATTTTAGGCGTAACTCAAT
AGGAATAAGCTGGATATCCTTAGGTAAGCTGAAGTCTCTAAGAAAACGTG
AGGAAATTCCATTACGAACGTAGACAATTAAACCTCCACTCGTAGATGAA
ATATCCAATCTATATGGTGGCTTGTACCCCTCTCGGACAAGCTGGACAAG
CTGTGATTTTGGAAAAGAAGAATTTAGTTTGGACTCAGCTATGCATAGAA
TATCATACTTATCTCCCACGACTGAATTCAACCCTTCCATCTTATTTTTC
AGCGAGTTAATATTTAAATAAGCCAGATCTATGTTTTTACTTTtctgatt
taatttttctttatgagAGTTGGAACTAGAATGTCAATTTGTagttacca
ttttgaaatttttggccagAGTAGCAGTTCCTTTAGCATTCAAGTGCAGC
TTGCTCCGGTTAAGATGAAATTTTCCAATATTTGAGTTGTCGATGTACCC
AATGTTTCGTTCTTCACACTTTGCTTTCAGTTGATCATTGATCAATCCAA
TCCTATCTTTGAAATTATCATCTCGATAAGTTAGAGAGGATATAACAACT
GGTATTTCATTCGAGTTATAGCAGTGTAAAGCAAGCTTCACAATATTGTC
AATTTCATCATTGTTagaagttttcttcaaatcaTTTGTTCCCACGTGGA
TCACAAGTTGGTCGGGTTTCATTT Run BLAST on NCBI protein sequence of TCONS_00027955-protein >TCONS_00027955-protein ID=TCONS_00027955-protein|Name=TCONS_00027955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MEGLNSVVGDKYDILCIAESKLNSSFPKSQLVQLVREGYKPPYRLDISST
SGGLIVYVRNGISSRFLRDFSLPKDIQLIPIELRLKSHKWLILFLYRYHS
QKLESFFQLLSDLLDFYSNFERCMLIGDFNCEPTNPILNNFLEENSLYCH
IKTKTCFKKVEGSRIDLILSNQKYGLQKTGTWDTGLSDFHHLIYTQLKSR
YTRLPPRKANYRCYNDFVEKNFLTDLSLQMTSSNINEIDDFENKFVDVLD
RHGPRKTRMIRGNEKPHINRTLRKAIMERSRLRNIYHRSNSFSDMRAYHK
QRNYVCSLNRKIKKNYFKTVASNPGNSGQNFWEICKPFFFR Run BLAST on NCBI transcript from alignment at sc0000658:113435..115658 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027955 ID=TCONS_00027955|Name=TCONS_00027955|organism=Clytia hemisphaerica|type=transcript|length=2224bp|location=Sequence derived from alignment at sc0000658:113435..115658 (Clytia hemisphaerica)
AAATGAAACCCGACCAACTTGTGATCCACGTGGGAACAAAtgatttgaag
aaaacttctAACAATGATGAAATTGACAATATTGTGAAGCTTGCTTTACA
CTGCTATAACTCGAATGAAATACCAGTTGTTATATCCTCTCTAACTTATC
GAGATGATAATTTCAAAGATAGGATTGGATTGATCAATGATCAACTGAAA
GCAAAGTGTGAAGAACGAAACATTGGGTACATCGACAACTCAAATATTGG
AAAATTTCATCTTAACCGGAGCAAGCTGCACTTGAATGCTAAAGGAACTG
CTACTctggccaaaaatttcaaaatggtaactACAAATTGACATTCTAGT
TCCAACTctcataaagaaaaattaaatcagaAAAGTAAAAACATAGATCT
GGCTTATTTAAATATTAACTCGCTGAAAAATAAGATGGAAGGGTTGAATT
CAGTCGTGGGAGATAAGTATGATATTCTATGCATAGCTGAGTCCAAACTA
AATTCTTCTTTTCCAAAATCACAGCTTGTCCAGCTTGTCCGAGAGGGGTA
CAAGCCACCATATAGATTGGATATTTCATCTACGAGTGGAGGTTTAATTG
TCTACGTTCGTAATGGAATTTCCTCACGTTTTCTTAGAGACTTCAGCTTA
CCTAAGGATATCCAGCTTATTCCTATTGAGTTACGCCTAAAATCTCACAA
GTggctaattttgtttttatacagATATCACTCACAGAAGCTAGAATCTT
TTTTCCAATTATTATCTGATTTATTAGACTTTTATTCCAATTTTGAGCGA
TGTATGTTGATTGGTGACTTCAACTGCGAACCAACAAACCCAATCTTAAA
TAACTTTCTGGAAGAAAATTCATTATATTGTCacattaaaacaaaaactt
gcttcaaaaaagttgaaggaagtcgCATTGATTTAATACTTTCAAACCAA
AAATATGGGTTGCAGAAGACAGGTACCTGGGACACCGGTCTTAGTGATTT
TCACCACTTAATATACACTCAGCTCAAAAGTAGATATACTAGATTACCAC
CGCGTAAAGCAAATTATCGATGCTATAATGATTTTgtcgaaaagaatttt
ttgacaGATCTATCTTTACAAATGACATCAtcaaatataaatgaaattga
TGATTTTGAGAACAAATTCGTAGATGTTTTAGATAGGCATGGACCTCGAA
AAACAAGGATGATTCGTGGGAATGAAAAACCCCACATAAACAGGACCCTT
CGAAAAGCCATCATGGAAAGGTCAAGACTTCGTAACATCTATCATCGATC
CAACAGTTTTTCAGATATGCGTGCCTATCATAAACAGCGAAACTATGTTT
GTAGCTtgaatcgaaaaattaagaaaaactatttcaaaacgGTTGCCTCA
AATCCCGGAAATTCTGGACAAAATTTTTGGGAAATATGCAAACCCTTTTT
TTTCAGATAAGCATACCGTTTCGGAAAAGATTATCTTAGTTGATAAAGAT
GAAATTGTAAATAGTGATATTACTACTGCTCAACCTTTCAATAATTACTT
TAATGGCATAACCAAGACACTGGATATTTACGAATGGCCGCAATACACTG
AGCAGGTCATTGGTGATCCGGTGCTCAATGCTATTACAAGATATTTAGAC
CATCCTAGTATCATAAAAATCAGAAACATTTTTGGTGATAATTCCTTTGA
ATTTACAAATACTGACAATGAAACTGTCCATGAATTGATTATGTCATTAA
ATTGTAATAAATCTACATCTGGGGATGTAAGCTCAAAACTCATCCAAAAG
TCTGCTAATATCTGTTCTTTTGTACTCAAGAACTGCTTTAACTCTTGTCT
TAACCAAGCACTTTTTCCTGAAAGCTTAAAGCGGGCCACAATAACCCCAG
TCTTCAAAGAAGGCGATCCAACGAGTGTTAAAAACTACAGACCTATTAGC
ATACTTCCTACAGTATCCAaagtatttgaaaaaatcattgccCAACAGTT
AAatccttttctaaaaaaactgcTTCTCAGAGTTACTTTGTGGCTTCAGA
AAAGGGCACAGTACACAGCATGCTATATTGCGATTATTACATTTCTGGCA
AAGGGCACTTGACGATTCAAATATTGTGGGTACTGTACTCATGGATTTAT
CTAAAGCTTATGATTGTCTACCCCCTGATTTACTTATCGCAAAGCTAGCA
GCATATGGTGTAAACCATAATAGT Coding sequence (CDS) from alignment at sc0000658:113435..115658 >TCONS_00027955 ID=TCONS_00027955|Name=TCONS_00027955|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000658:113435..115658 (Clytia hemisphaerica)
ATGGAAGGGTTGAATTCAGTCGTGGGAGATAAGTATGATATTCTATGCAT
AGCTGAGTCCAAACTAAATTCTTCTTTTCCAAAATCACAGCTTGTCCAGC
TTGTCCGAGAGGGGTACAAGCCACCATATAGATTGGATATTTCATCTACG
AGTGGAGGTTTAATTGTCTACGTTCGTAATGGAATTTCCTCACGTTTTCT
TAGAGACTTCAGCTTACCTAAGGATATCCAGCTTATTCCTATTGAGTTAC
GCCTAAAATCTCACAAGTggctaattttgtttttatacagATATCACTCA
CAGAAGCTAGAATCTTTTTTCCAATTATTATCTGATTTATTAGACTTTTA
TTCCAATTTTGAGCGATGTATGTTGATTGGTGACTTCAACTGCGAACCAA
CAAACCCAATCTTAAATAACTTTCTGGAAGAAAATTCATTATATTGTCac
attaaaacaaaaacttgcttcaaaaaagttgaaggaagtcgCATTGATTT
AATACTTTCAAACCAAAAATATGGGTTGCAGAAGACAGGTACCTGGGACA
CCGGTCTTAGTGATTTTCACCACTTAATATACACTCAGCTCAAAAGTAGA
TATACTAGATTACCACCGCGTAAAGCAAATTATCGATGCTATAATGATTT
TgtcgaaaagaattttttgacaGATCTATCTTTACAAATGACATCAtcaa
atataaatgaaattgaTGATTTTGAGAACAAATTCGTAGATGTTTTAGAT
AGGCATGGACCTCGAAAAACAAGGATGATTCGTGGGAATGAAAAACCCCA
CATAAACAGGACCCTTCGAAAAGCCATCATGGAAAGGTCAAGACTTCGTA
ACATCTATCATCGATCCAACAGTTTTTCAGATATGCGTGCCTATCATAAA
CAGCGAAACTATGTTTGTAGCTtgaatcgaaaaattaagaaaaactattt
caaaacgGTTGCCTCAAATCCCGGAAATTCTGGACAAAATTTTTGGGAAA
TATGCAAACCCTTTTTTTTCAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027955-exon-sc0000658-1491911889:113435..115658 | TCONS_00027955-exon-sc0000658-1491911889:113435..115658 | Clytia hemisphaerica | exon |
| TCONS_00027955-exon-sc0000658-1510915933:113435..115658 | TCONS_00027955-exon-sc0000658-1510915933:113435..115658 | Clytia hemisphaerica | exon |
| TCONS_00027955-exon-sc0000658-1575043694:113435..115658 | TCONS_00027955-exon-sc0000658-1575043694:113435..115658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000658 | supercontig | sc0000658:113435..115658 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
|
