TCONS_00027965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027965
Unique NameTCONS_00027965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027965 ID=TCONS_00027965|Name=TCONS_00027965|organism=Clytia hemisphaerica|type=transcript|length=495bp
TTACGCTGATAATGACCATCGTCTATACCCGGAAAACTATACTTTAGCTA
TAAAAAACTTGGACGTATATTATAGAGTTGGGTCACAAGACCACACAAAC
CAAACGCAAAATCATTATcttgaacttttcaaaatatcttAAGGTTTAAT
CGTAAGGAATCGTTAGTTAGGAATCGTGGAACGAGGTGATGAGCGTCGAT
TGTAGAACAAATTCATATCGAATAGAGATGAtaggaaaagaaataaaatt
gatgacATCAAGTCAAAACTTTGTAAAGTGTTTTCAAAAGCTGGTCGTAA
ACTAGTAAATGCTGTTGAAATAGAAgaaataaaataagaataaacaTTAA
AGTCTCTTTTTGATTGGTTCCTGATCACAATCTTGACATTGGGGATAGTC
TTCTTCATCGTCATCCACACCATGCAAGTACTCGGCACAATATACGCAAA
TTGGCTCATAGCCGCACTTATAATACAGTTTTTCGATGGGATCAG
Run BLAST on NCBI

protein sequence of TCONS_00027965-protein

>TCONS_00027965-protein ID=TCONS_00027965-protein|Name=TCONS_00027965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
LIPSKNCIISAAMSQFAYIVPSTCMVWMTMKKTIPNVKIVIRNQSKRDFN
VYSYFISSISTAFTSLRPAFENTLQSFDLMSSILFLFLSSLFDMNLFYNR
RSSPRSTIPN
Run BLAST on NCBI

transcript from alignment at sc0000658:188417..188911

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027965 ID=TCONS_00027965|Name=TCONS_00027965|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at sc0000658:188417..188911 (Clytia hemisphaerica)
CTGATCCCATCGAAAAACTGTATTATAAGTGCGGCTATGAGCCAATTTGC
GTATATTGTGCCGAGTACTTGCATGGTGTGGATGACGATGAAGAAGACTA
TCCCCAATGTCAAGATTGTGATCAGGAACCAATCAAAAAGAGACTTTAAt
gtttattcttattttatttcTTCTATTTCAACAGCATTTACTAGTTTACG
ACCAGCTTTTGAAAACACTTTACAAAGTTTTGACTTGATgtcatcaattt
tatttcttttcctaTCATCTCTATTCGATATGAATTTGTTCTACAATCGA
CGCTCATCACCTCGTTCCACGATTCCTAACTAACGATTCCTTACGATTAA
ACCTTaagatattttgaaaagttcaagATAATGATTTTGCGTTTGGTTTG
TGTGGTCTTGTGACCCAACTCTATAATATACGTCCAAGTTTTTTATAGCT
AAAGTATAGTTTTCCGGGTATAGACGATGGTCATTATCAGCGTAA

Coding sequence (CDS) from alignment at sc0000658:188417..188911

>TCONS_00027965 ID=TCONS_00027965|Name=TCONS_00027965|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000658:188417..188911 (Clytia hemisphaerica)
CTGATCCCATCGAAAAACTGTATTATAAGTGCGGCTATGAGCCAATTTGC
GTATATTGTGCCGAGTACTTGCATGGTGTGGATGACGATGAAGAAGACTA
TCCCCAATGTCAAGATTGTGATCAGGAACCAATCAAAAAGAGACTTTAAt
gtttattcttattttatttcTTCTATTTCAACAGCATTTACTAGTTTACG
ACCAGCTTTTGAAAACACTTTACAAAGTTTTGACTTGATgtcatcaattt
tatttcttttcctaTCATCTCTATTCGATATGAATTTGTTCTACAATCGA
CGCTCATCACCTCGTTCCACGATTCCTAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015824XLOC_015824Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027965-exon-sc0000658-1491911889:188417..188911TCONS_00027965-exon-sc0000658-1491911889:188417..188911Clytia hemisphaericaexon
TCONS_00027965-exon-sc0000658-1510915933:188417..188911TCONS_00027965-exon-sc0000658-1510915933:188417..188911Clytia hemisphaericaexon
TCONS_00027965-exon-sc0000658-1575043694:188417..188911TCONS_00027965-exon-sc0000658-1575043694:188417..188911Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027965-proteinTCONS_00027965-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000658supercontigsc0000658:188417..188911 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120966	0.140454	0.549648	0.167286	0	0.318967	0	0.313599	0	0	0.0826153	0.0825005	0.0856775	0.774824	0.377957	0.186245	0.859027	0	0.551952	0.239873	0	0.284462	0.387926	0	0	0.170094	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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