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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027968 ID=TCONS_00027968|Name=TCONS_00027968|organism=Clytia hemisphaerica|type=transcript|length=803bp
ttttagatCAACGAACTTCACCAATTGGTGACCAGTTGGGAAAGCGTTGC
AAGTGTCGTTCCTGATTTGatTGAACGATTAACCGCATTACGCTCTTTGA
ATGATCAAGctaCGAATTTTTCACAATCTTTGGATCATCTCTCGAGCACA
CAACACGTTATCCGTGATCAATTACGAACTCAAAAGGACACTCTTGATAA
GTACGAGAAGAGTTTTGCTGTGAACGTTCAATCCATACAAGCGAACTGTG
CATCGTTGGAAAGTCGAATCACCGAACTCATGAAGAAAGTCGGTAGTTAA
TAATGTTGAACGATGGAGTTCAGTGCTCATGTTAACATAGGAAATTTCCG
AGATGTACCTAGTACTTATTTTTATAAAGACTCTTTACAATTTATTCTGT
TTGTAAATACTGGACTTAAATTTCTGCTTGttatctattcatgatatgca
ccattgcaatgtcttctgacattacatcatggacccaatagctTTATGTA
AGTGACGTGAAATcggtcaatacgtcactttcaactttcaaataGTCCAC
AAATGCTTTTACTACATTGATTGATCCGGGTGAGGCAATCGATCTGAAAA
TAACCGTATGTACGAACGAATAGTTTACCCTGAGCCCCCAACCCCCTGGA
TTGATCGTATGAGTCACGCCCAAAACTCTACTAAACCTATTTTGTGTGCT
GTGCAACAGCATTTCTACAACTTACTTATTTCTATAGTCTTTGTCATATG
AGATTGGTATTAGGTGGGGTGTGTAAGCCCgattgaaatcaaaaaatatt
tga Run BLAST on NCBI transcript from alignment at sc0000660:727..6132+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027968 ID=TCONS_00027968|Name=TCONS_00027968|organism=Clytia hemisphaerica|type=transcript|length=5406bp|location=Sequence derived from alignment at sc0000660:727..6132+ (Clytia hemisphaerica)
ttttagatCAACGAACTTCACCAATTGGTGACCAGTTGGGAAAGCGTTGC
AAGTGTCGTTCCTGATTTGGTAAGTTGTGTTTTATGGTCACCCAGCCTCT
TTCCCCTTTGTATGCTTTACATCAGACAACATTCAGGATATCATTAAAGG
ATCTTCAACCATGATCTTTCACTTCCAAGCGAGAAtcattcataattttc
ttagatTTTCAGTAAGCTGGATACAGGGATGAAGTAGTTGACTCCTCAAT
GGGCAAAGACAGTTGACAGGACTGTAACGCCCTAAAACGAACTGCATTCA
GGATATCATTATGTTATTATACATTAGGTCCATCCCAGGccctttttttc
atttatatcATTAAAGCtctttattttctgacattgtTTTAGTCCAGGTG
GGTGATGGTTCTTTTTCTGGATTTAACGTGAGGATAAGAATTTTTCTTAA
CAAGGTGACTAGAAAGTTGCTGGTCACTACACTTTGGTCGTTATTGTTTG
ATCTTTAGATTCTGCTAATGGAAATTGATTAAATTGATTAAAAAGCGAAC
TAAAAACTTAACTTTTTGTCAGTTTGTCAGCCATTTAGTAGGGCTCGCTT
CGAAAAAACACGAACCTTTAGCCTGCCTATTTCCTTCAAAGGGAAANACT
TAACTTTTTGTCAGTTTGTCAGCCATTTAGTAGGGCTCGCTTCGAAAAAA
CACGAACCTTTAGCCTGCCTATTTCCTTCAAAGGGAAACGATTGTCGAGT
TATTGTATTACTTCTTATGAAAACACAACACCTTTTTTAAGATAACAAAA
AGCTTCATTACGTTTATTACgccatgttttcttttcttaataGCGGGTTT
AGTAAACGCTATTCTAATTTGTTTTTGTACCCCTGAGTGAGTTGAATTTG
TCCCCTTTTGTATAACGCTATGCATCGTCCTTTTAATTCTCATAAATGGT
ATTGCCTATCAAATAGAGTTGGATTAGTCTTTATCAAGTATAATTATGCG
TGCTTTGATAATTAATTTTATGCTATTATAGAAAGGCATAATTATTCAGA
ACTTAATTATGCTTTCGAACTTTTCTAATTTGAGGAACCTTAAATTGACA
AATAACATTTTCTTTCATCTTTTGTCGTACTGCTTCTACACTGCATGTGG
TTTTTAGAGGTTAGCAATTCAGTCAGCTATTCATACTACGTCATAATGGC
GGGCACACATTTGAAAACAACCTTGTGTGCGGACAAAAAGTAGGGTCtca
atagaccttatcagagtttttgatttttctaaaaaatcgatgcattgtgg
gattgtttcgagtgtattacaataaaattccctcgaggaattcctaagaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNgtttttgatttttctaaaaaatcgatgcattgtgggattgtttcga
gtgtattacaataaaattccctcgaggaattcctaagagaattctattgt
aatacactcgaaacaatcccaaaatgtgtcgattttttagaaaaatcaaa
aactccgataaggtcaaTTTTTTACCCTTACAGTGCGGCGAAAATTTACC
CCTACggcacatttaaaaaaattccataaaaaaggGAGTGCAACTTTCCA
AAATTTCTCCCAAAAAAGCTGTTTTTACATGATCGTTCTTTGCCGACTTT
GAATGCACTTAAGCTATAAGTATGATACTGTTTTTAAAGGGATTATgtat
cagatgattttttatatttggcttagagataccttttatGATCCAGAGAG
ACACCTCTAAATCCTTTGacccaattattttccaaagctgagatatttga
ctttgaatttacaaatatttacttaaaaacaatagaaatttaacgtaaag
actgtgtaaagactcacttttagagatttcaaagtcaaatatctcagctt
tggaaaaaaattgggtCAAAGGATTTAGAGGTGTGGTTATATTATTGGTA
CCTTATAACTTTATGTTATTTAtggttgtgtttttttttgctctagatTG
AACGATTAACCGCATTACGCTCTTTGAATGATCAAGGTAAGCTTTTGAAA
TCCTAATCCTAACAGTTTTGCATTTTGCATCCGTACagtgatgtttttaa
aaaatttacccTGTAAAAGTTGGTTTTTATATCTGATTATATCTTCATCT
TCTTAAACTCAGCTTGGCAGATATTCAAAACACCCTTTTCGATTCAGTAT
TAGTTCATATGTGGTCTGACCACTTCACAAATTTTTACTGGAGCTTCCGG
TAGTTTCCATAGGCtattcacagtcgcaaagcgtagcgggtaatcaggac
cactgcgcgctaatgacgacttactattggtcaaaagttatgaaaaattt
tgaagatttttgagtCTAGCCAACAGGAAGCcgttatggaggcgcaatca
gtactgattacccatgatccatttcgactgtgaaatggcctattgaaATC
TGGATGGAAGCCAGCTCTCAACAAGCTGGTTAAACCTGGTTAAACCGTCT
GGTTAAACCTttctgttttatatttttcagctaCGAATTTTTCACAATCT
TTGGATCATCTCTCGAGCACACAACACGTTATCCGTGATCAATTACGAAC
TCAAAAGGACACTCTTGATAAGGTAAACTACATCAATACACCTTTCcagt
aattcaaacttctcagaaatggcccgggaaaatgtgcgctccaccgttat
gtaaaaattttttgggaggtaaacgaacgcgtttttgcctgcgagggatT
AGGGAAAGTGgcttttcagcttctaacttttgatagcgatcttcttttgg
aaaaagattttcaggatGGTAtaatattatgaatagattgaacatattaa
attttgaggggatttagcgttcgacagaacttaagaaaagctcaaaaaac
caacttcccctaaggaaacgcaggctaaaacgggtttgtttacctccaga
gaccaaatggtggagagcatcaaaataatgcgcgcgcattagttttacga
attacgggaaaggtgtattgaaatCCATTTATCTCTGGCAAAGGGTGGAA
ATGGTGATAGTTCGTCAGCCAGTTCCAGGGTATtaggaatgttttttttt
cagatgttaatgtaaaaaagagatttttcaaaatgaaagggTGGATAATt
gaggttttttttttatattctgTTTACTTGCTTATTGTCGTAAAAGCAgc
cgagatggagtttttacaagctcttatttgattggttgctcgttaaccag
taataaaacaattttgttactttttctaaagagtgcgtcattttttattg
tttcaaatgactaattattaaagtatcttataaaaattcCATCCCTTCTG
CATCAATTGAAATCCATACATCTCGGGCAAAGGATGGAAATGGTGATAGT
TCGTCAGCCAAATTATACAGGATATTAGGAATGTTTtaggaatgtttttt
ttttcagatgtcTATGTAAAAgggagatttttcaaaatgaaagggTGGAA
AATCGAAGCTTGTCTTTTTCTAAGGTTGAATCTTATGATATTCTTGTTTA
CTCGCTTATTGTCATAAAAGAAGCCATTTTCTGAAACTAGAGACTGACTG
AGTTTGTTCTTGATTATTTCTTGGATTTTGACCAAAATAGAGCATCGTGT
TCttagtaaaataatttttcataaaaacctTATATTTCATGATCTGCACC
GCTGAAAATGTAGTTCATTATGCTAGACGACTATTTCAGACATGGAGTAA
TTCAGATATagtagaaaataagcaaaaaatcatgaaaggAACAAAGTGTA
TTCTTAACAAACTGATTTTACCCTGTAataattatcgtattatcatctaa
agtctgtctcaatataatttgcagcggagacaaaaaaggctgtaattttt
tcttctttttcattttcaatcttcatttcCCGATATTTTTTAACTTATTT
CTTTATGCTAATTaataataattaataataattCTCTCAGAAGTTATAGG
CTtgtttgtctccgctgcaaattatattgagacagactttaacaCTCATG
TTACTGTATTAGACTGATTATAAACGAGtctaattttcttttctatCTTT
TCAGTACGAGAAGAGTTTTGCTGTGAACGTTCAATCCATACAAGCGAACT
GTGCATCGTTGGAAAGTCGAATCACCGAACTCATGAAGAAAGTCGGTAGT
TAATAATGTTGAACGATGGAGTTCAGTGCTCATGTTAACATAGGAAATTT
CCGAGATGTACCTAGTACTTATTTTTATAAAGACTCTTTACAATTTATTC
TGTTTGTAAATACTGGACTTAAATTTCTGCTTGttatctattcatgatat
gcaccattgcaatgtcttctgacattacatcatggacccaatagctTTAT
GTAAGTGACGTGAAATcggtcaatacgtcactttcaactttcaaataGTC
CACAAATGCTTTTACTACATTGATTGATCCGGGTGAGGCAATCGATCTGA
AAATAACCGTATGTACGAACGAATAGTTTACCCTGAGCCCCCAACCCCCT
GGATTGATCGTATGAGTCACGCCCAAAACTCTACTAAACCTATTTTGTGT
GCTGTGCAACAGCATTTCTACAACTTACTTATTTCTATAGTCTTTGTCAT
ATGAGATTGGTATTAGGTGGGGTGTGTAAGCCCgattgaaatcaaaaaat
atttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027968-exon-sc0000660-1491911889:727..795 | TCONS_00027968-exon-sc0000660-1491911889:727..795 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1510915933:727..795 | TCONS_00027968-exon-sc0000660-1510915933:727..795 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1575043694:727..795 | TCONS_00027968-exon-sc0000660-1575043694:727..795 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1491911889:3423..3462 | TCONS_00027968-exon-sc0000660-1491911889:3423..3462 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1510915933:3423..3462 | TCONS_00027968-exon-sc0000660-1510915933:3423..3462 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1575043694:3423..3462 | TCONS_00027968-exon-sc0000660-1575043694:3423..3462 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1491911889:3957..4048 | TCONS_00027968-exon-sc0000660-1491911889:3957..4048 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1510915933:3957..4048 | TCONS_00027968-exon-sc0000660-1510915933:3957..4048 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1575043694:3957..4048 | TCONS_00027968-exon-sc0000660-1575043694:3957..4048 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1491911889:5531..6132 | TCONS_00027968-exon-sc0000660-1491911889:5531..6132 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1510915933:5531..6132 | TCONS_00027968-exon-sc0000660-1510915933:5531..6132 | Clytia hemisphaerica | exon |
| TCONS_00027968-exon-sc0000660-1575043694:5531..6132 | TCONS_00027968-exon-sc0000660-1575043694:5531..6132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000660 | supercontig | sc0000660:727..6132 + |
Blast
The following BLAST results are available for this feature:
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