TCONS_00027973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027973
Unique NameTCONS_00027973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027973 ID=TCONS_00027973|Name=TCONS_00027973|organism=Clytia hemisphaerica|type=transcript|length=3953bp
atttttcaccctatgatttttacctgagaccgtcatatttatccaaaaat
cacaccaaagtgtcaaaaaaaaaattggtacccaagttattttgattccc
ctaccctttagctttccaaaaatgtataacaagtacTCTGACTAAAAAAA
TCAAGCAACCTAAAAAACAACGAGCACATTTCCCCCTATAATACTATTtg
tttcaatcagcaattctgacctttctattattcttatctctaaagaaggg
tgacaaaattagaagagagatgttgacattagaccaacttacggtagtat
TCAGCTATTACAACCCTTCCAACTTTAAGGAGAGTGAAAGAATCAAAAAA
GGGGAGccacattagaccaagttaatTAACAAACCTTCATTTTCACTGAG
GATTTTTCCTCCGTATAAATCCAAAAGAAGATACGAGTAGCTGtaaccaa
aaaccaaaattatcaTCCCAACTAATGAGACAAACTTTAAAACAAGAAAT
AAAGATCTTGCAGCTTcatccaaactttcttttttctgcTCATTGGCTCT
TATTCCACGtaacaatatttttgaaaagtaagtGTAATATGTTTCCTCAA
TTGGCATGAATATGAATCTAGCAGCAAGCGATCCCAGATTGTTTATAACA
TCATAAACTCCTTGTTCACTAAATGTCAATATACCAAATATTGTCATTAT
GTAACGCTCCCCTTCTGTTAGAAACTGTTTTAGCATTGATTGTTTGtaaa
aacttgtaacaaggttCACATAATCTTGATGAAAAAGAGGCTTTGATCTA
ATGTTAGGCAAAAAGTCTGCAAACTGCTTGAATTGTGAGAGCTCTTTGGT
CTTCTTTGAATCAtcttttgttaaatatttccaGAAATAGATAGCATAGC
ATAAAGAATACACAATGGCTGCTAAAACAAAAGTTACACCATACATTACA
AGTGCCTTGTcaggaaagaaaacaaccagaaatgTCGATATAAAACATCT
AACAGCTAGATAAACTCCTTCAAACATAACTTTTAATGAAAGTAATGAGT
TTCTTTGGGCCAGTATCCAAAAGGGTTCTACTGCAAGTTCAAAACTACAG
CTTGCAGCAACTAAAATGGTGGCCATTTGATATTGCCAGATAAGGTCGTC
TTTTGGTTGTGGTAACCAGCTTGTccagataaaaatcaaaacaaatgaag
aaaacaaaccaacaaTACTGCAAATCCAGGTCAAATTAATCATTTGCTTC
AGTTTAATTTGCTCAACATTCTCCTTAATGCTCTGTTGACTCAAACAAGC
TTTTCGAAAAGCTTCTCGGGAAATGAACAACATAGTGCTGTAAAGTAACA
TTAGCCGAACATTCATTACACCCAAAACTTCCCTGGATAGATAACGAAGC
ATAATAGCATTCATTGAAAATGTAGAAAGTCGAAAGATAACCTGTAAAAC
CATATTGTATGAGGCACTTTTGACTGCATCTTTCATTTCTTGGCCTTTCG
ACGCCATTTTCTTTGTTGACAATTTCAGCGTACCTGAGATAATCCACTTC
CTTAATCTAACAGACGTCTCTGTTTGATCAAAGgtgatttgagaaaaaag
gcCGCGTAAAAAGCCTATCAAAATGTCACAAAGTATTCAGCTATATGTGC
ATAATTAGACGGTTTCTTTCGTGAAAAGATTCTTTTCTAGGATTCGAAGT
GGTATTTCTTCAAGTAAATAGAAACcgtctaaaaaagaaaatattacgtA
ATTTGGTAAAccgatgtaaacaaaaatggtagacattTTCTGCAAGCAAA
gtccaaaaatctaaaaatcggTCAGGTTGGTGGTACCAACTCCACCACCT
CCAGGCTTCAAATCGTCCGAGTATAATCTATTATATTGGTAtgtttaaag
ttatttttcgtGTTTCAAAAGTCAATCTTGGATTTTTAGAAGTTTCAAGG
TGTCTACGAAATGATGGAATAAGgCAGATCCATGGAGCCTTGAGAACTTT
TTACCAACCAAATGTTGTCCAATCAAGACATTTCTTTAATGTCGACCCCT
CACAATACTTTGGGGATAGAAGTAAAGAATATTCAGAGACCAAAGCTATA
GGGTATTCTATGGAACAATTATATGATGTCGTGGAGAATGTAGATGATTA
TAAATATTTTGTACCGTGGTGCCGATCTTCTGTTGTCTTTGAGAAAAGTG
AATCTCATGCAAGAGCCAATCTTGAGGTTGGATTCCCACCAGTATCTGAA
AAGTATACGTCTGTGCTAACATTAGCTAAACCCAATCTGGTAAAGTCGGA
ATGTATGGATGGGTCACTATTCAATCACCTCCTGTGCGTTTGGAAGATTA
GCAAAGGACCAAGAGACGTACCAAACTCATGCACACTCAATTTTTATGTA
TCTTTCGAATTTAAATCACTTCTTCATTCCCAACTTTCAACCATGTTCTT
CGATGAAGTTGTACGTCAGATGGTCAAAGCATTTGAAAGTCGTTGTGAGA
AACTATACGGACCAAGCAGTTTATTGAACACCAAACACACTAATAAACAA
AGGAGAGGTATCACTAAGTCAGATCTAAAAAAGAGGCAACAACAAATTAT
ACAATCAAAAAAGATCATCGACGGAAGCAGTTGACGAAAATTGGATTATT
GGtagaattgaattgaatatagacgaaatttttaaaatgaaaagtaaagA
CTTTTGAAACTGAAGAAGCAGTATACTACAATCGATTCGTGTCGAGatta
caaaatgaaaatggaactaaaTGATAAATTGTAtagattgatttaattat
tcaacacaaATTTTATAGTgtaacctttttatttttggaagTTTAGCTGA
TAGCTGATGGCAATCTCCTAAAACAGGATTTTTTAAGGCAGATAATTAAC
CATACAAATATTGAACGCTTCACCAGGCTGAGATATGGATTCGTTGAGTA
GTCTCAAACAGATTTCGGTTTCACAAAGTATTTCAAGAATACACTCTTCT
CCAGTGAATTCGGCCCTCGTGTTTAAGTATTTTTGACGACaatgttcttt
tgttttaaaattgaaaactgCCGTCTTTGACCTCTACtgtcgggtaccta
atagccggggggcgctaattaatttttcacccaggacattcttattccaa
cccccccccccccccttttaaagtgttttgttttttcccccccccccccc
cccgcttattaagttttgagattttttccaaccccctagtgagttccact
ttgacgattttcaaaaaatagaagcctttcaagtgctttgaacgcaaatt
agatttttttttctactgtaggagcttcgaaagttaaaagtgacgtcaaa
aaattgaatgtttagagcccgaaaacccaggctcaaaacattagaaaaag
tcgcaaagtgaaatagacgttaattgcgtagaaaaaacgcgggttacgtc
tagtataggctaccaACACCCtacttattccaaacccccggctattaggt
acccgagagtaggtagATTTGATATTAGACGATTCTGATTGTAAACGAGA
CGTGCAATGCTTTAAAatcaatcttgagaaaagtgTATGCAACTATTTGg
atattctaaaatatttttgcatgCATGTTCTTAAATGAGAATATGTTCTC
Agttaaatattttagtgaaagtaaatatttttttgaatattccagagttt
atataaaaacaatttagATCCCTCTCGATTATATATCCCTCGCAcgtact
tttttatcaaaataattttacattgtatttatttttattgtagtTTGTAC
TATATCACTGATGACAGAGAAAAACCTAGTATGAAACAAAGATTAGTTAT
TTTTCTGCTGCTAAACATTGCCACTCTTTTAAATtggtttttgcaataaa
aatgtttaagaatatttttctagggaaaaatctttacaaaacaCTTCATA
AAC
Run BLAST on NCBI

transcript from alignment at sc0000660:56673..70262+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027973 ID=TCONS_00027973|Name=TCONS_00027973|organism=Clytia hemisphaerica|type=transcript|length=13590bp|location=Sequence derived from alignment at sc0000660:56673..70262+ (Clytia hemisphaerica)
atttttcaccctatgatttttacctgagaccgtcatatttatccaaaaat
cacaccaaagtgtcaaaaaaaaaattggtacccaagttattttgattccc
ctaccctttagctttccaaaaatgtataacaagtacTCTGACTAAAAAAA
TCAAGCAACCTAAAAAACAACGAGCACATTTCCCCCTATAATACTATTtg
tttcaatcagcaattctgacctttctattattcttatctctaaagaaggg
tgacaaaattagaagagagatgttgacattagaccaacttacggtagtat
TCAGCTATTACAACCCTTCCAACTTTAAGGAGAGTGAAAGAATCAAAAAA
GGGGAGccacattagaccaagttaatTAACAAACCTTCATTTTCACTGAG
GATTTTTCCTCCGTATAAATCCAAAAGAAGATACGAGTAGCTGtaaccaa
aaaccaaaattatcaTCCCAACTAATGAGACAAACTTTAAAACAAGAAAT
AAAGATCTTGCAGCTTcatccaaactttcttttttctgcTCATTGGCTCT
TATTCCACGtaacaatatttttgaaaagtaagtGTAATATGTTTCCTCAA
TTGGCATGAATATGAATCTAGCAGCAAGCGATCCCAGATTGTTTATAACA
TCATAAACTCCTTGTTCACTAAATGTCAATATACCAAATATTGTCATTAT
GTAACGCTCCCCTTCTGTTAGAAACTGTTTTAGCATTGATTGTTTGtaaa
aacttgtaacaaggttCACATAATCTTGATGAAAAAGAGGCTTTGATCTA
ATGTTAGGCAAAAAGTCTGCAAACTGCTTGAATTGTGAGAGCTCTTTGGT
CTTCTTTGAATCAtcttttgttaaatatttccaGAAATAGATAGCATAGC
ATAAAGAATACACAATGGCTGCTAAAACAAAAGTTACACCATACATTACA
AGTGCCTTGTcaggaaagaaaacaaccagaaatgTCGATATAAAACATCT
AACAGCTAGATAAACTCCTTCAAACATAACTTTTAATGAAAGTAATGAGT
TTCTTTGGGCCAGTATCCAAAAGGGTTCTACTGCAAGTTCAAAACTACAG
CTTGCAGCAACTAAAATGGTGGCCATTTGATATTGCCAGATAAGGTCGTC
TTTTGGTTGTGGTAACCAGCTTGTccagataaaaatcaaaacaaatgaag
aaaacaaaccaacaaTACTGCAAATCCAGGTCAAATTAATCATTTGCTTC
AGTTTAATTTGCTCAACATTCTCCTTAATGCTCTGTTGACTCAAACAAGC
TTTTCGAAAAGCTTCTCGGGAAATGAACAACATAGTGCTGTAAAGTAACA
TTAGCCGAACATTCATTACACCCAAAACTTCCCTGGATAGATAACGAAGC
ATAATAGCATTCATTGAAAATGTAGAAAGTCGAAAGATAACCTGTAAAAC
CATATTGTATGAGGCACTTTTGACTGCATCTTTCATTTCTTGGCCTTTCG
ACGCCATTTTCTTTGTTGACAATTTCAGCGTACCTGAGATAATCCACTTC
CTTAATCTAACAGACGTCTCTGTTTGATCAAAGgtgatttgagaaaaaag
gcCGCGTAAAAAGCCTATCAAAATGTCACAAAGTATTCAGCTATATGTGC
ATAATTAGACGGTTTCTTTCGTGAAAAGATTCTTTTCTAGGATTCGAAGT
GGTATTTCTTCAAGTAAATAGAAACcgtctaaaaaagaaaatattacgtA
ATTTGGTAAAccgatgtaaacaaaaatggtagacattTTCTGCAAGCAAA
gtccaaaaatctaaaaatcggTCAGGTTGGTGGTACCAACTCCACCACCT
CCAGGCTTCAAATCGTCCGAGTATAATCTATTATATTGGTAtgtttaaag
ttatttttcgtGTTTCAAAAGTCAATCTTGGATTTTTAGAAGTTTCAAGG
TGTCTACGAAATGATGGAATAAGGTAAATATTATGCCGTAGCAGCCaaca
ttttatgttttttttttgtttttctttctcaaCAACAGTCACCAGATTTG
AAATATGGGGGATGTCCTTACAACAAGCTTTTTAACACTTCTTTAGGCAA
ACGCAACAGTCTATtgcataccgtcaactgctctaacttgggagtatctg
acaaaacatgggacggcatgcaattcggccaccatttcaccgccgaacct
ccaaagtcatttgatttgagttaatgaacagcgtattaaaaatacacaat
ttctctttcgcaccgagtaggcttttaaatcaaagtatgaaaaaaatctg
tagtggaacacacccgagtgtctgtgcactctaagtACTAAGAGGAGCAA
AGAATAGAAGAAGTATATCCAGGCGTAATCTATCGTATTATTCGATTATC
GAATtaatcgaaactaatcgaagCTAATCGAAGCTATTATATTTCGATTA
GTCGAAATAATCGAAGcctaatcgaactaattgagataaattcgattaat
tcgataaATTTGATTGGGCTTCGATTATCACTCGATTAGTTTTGATTATC
cttcgattagtttcgattaTCCTTGAATTAGTTTCGATTATCCTTCGATA
AGCTTCGATAAGTTCTATTCCCCAATCTTCTTTTTTGGATTCATGTCCCA
TTCATGTTCAATGGATGGTCCGCTCAACGAtgtgtaaagcccgaagggct
agatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNggaatttcagcgcttgaccaatcagaagcttagCCAATTTTCG
GAAACAATAGCAGAAATACTTTTTCCGATATGTACTCACTTTTTCTTGCN
NNNNNNNNNNNNNNNNNNNtgttttctgcccaccacgctgaagctctaaa
gggatgggcgaaaacaaacaatctgacgactTTGTTGGACGGATTCATGC
GAGACCGCGTTCAAAACATCCTGGAAACTAGCGACACCgcttcaaaattt
gttttgattttgctgcAAAGGATTATGGGtggattatttttgatttagaa
ATGGCTCAAGTGGGGCGCCGTTTTTACAACGAGCACCTTGTTGTAAAACT
TTCAAAGCGGTATGGCCAATGTCCACAGATGTATATTTCGCATCGTACCt
ttagagcaaagcgtgtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCGTC
GAACCGAGCATCAGGCCGCCGCTTATCAAGATTATCGAATCTTAATCGAA
ACCTATCGAAAGTTAATCGAAGTTATCGAATATATCGATAGCtaatcgaa
gtaatcgaatggtaatcgaactaattgagaaaaaccttggaaaattcgat
taattcgattacGGCTCGATAGTTTCGATTAATCGAAGCCTAATCGAAGT
ATTAATTTCGATTAGTTTCTATaaattcgattaaaaatcgaattcgattt
tgttcgatagATTACGCCTGGGTATATATGATTGATAAatttggtggagt
tatcaaaacaaatttgttgtcaaagagatttaacagtaagtgaaaataca
gaccagatatcaaccagtcccatgtttcgaccaatcgtcccaagttagag
cagttgacggtaacttATTACTCTACTCTTCATTGGATGCAAGTATAAAA
CCAGCAGCGGGAATTAGATATTTTACCATGAGATATAGACCTTTTGGCCT
TTCCATccaccatattgaattgtatgcaaaaattatggtggccgaattgc
tgtggacgtgtggtgaaattcccttagaaagtatgcataAGTGGCATTGT
atttaaagtgtaatcttgtagaagcagtcagggcctcctttcactttatc
gatattacgcaaacgacagtgtgcgctaaattactttggtttcactttcg
atttcaaccaaaggtcttagcaacaggacgcgcgtacatagcaacagGGC
TGGGtacaaaaatctaaacatagaatttaaaaaaaataccgatcatcgta
taaagcactaaaaaataccccctttctatgtttagtttgttctacctcgc
attataactgaaaatatctttaaataacctttgtccgttaTCAGTCCggg
cggtaatctttgcccgcttcaattcttagataatgaccacgtggataaaa
aacgtatggaatgaaacctgacagaggGTTTTTAAGCAGATTTATTCAag
taaagctataagaggttcattacttgtggattttaaaggggaactaaaca
ttttttgaggTCATGCTTTTTTTGTCTCCAAGAACTACACAACACAATAT
AAgttcgaaaaaatataatttccactCTCAATGTCTTTCCTATTTTGTAt
aaaaccttctttaaaaaacgtataatttgtttaaaatgaaCCCCCACTTT
ACACATGTTTGTGATGTCATATCGTTCATATTTTCTATGAATTTTGTGTA
TGTTTATCAACTTTAAAGCTTGATAGTTCGTGAACAAGAAATATTAGGAA
GatagtaaaatcatttttgatttcaggaAGGATTCAGTTTTACGTGGACT
AAATTTGGGGTTGTCAGCttattccaataaaaagttcaattttttcaatc
gacTCTAAAATCCTTTTCACTCACTTGTTTTCGAAAGTTCAAACATAGTT
TTACTCTACtcaaaaatggctttttaatgAATTCTGTCTCTTGGTTAAAC
CATTTGTTATGGCTACACAAAAAAGTTAAAGGTTCTCTATCAACTAAAAG
CAAGAGTTGTTCCAATTACTTTCTGAACACTTTTACGCattgctttaaaa
agattagattttctgtaaacataaagagctatatcttttgatggagaagt
ttttagaaaaaaatattttcagaggtCATTCCTTGGAAGTATGTGATGTG
ATttatgtattttcaaaaaaatgtttagttcccctttaaaacctacataa
ccaaaaaacaaaagttgttgggaaggaaagagtaaaacAGGTAATTagaa
acgcaagacagaaggcttggttgtgttgatcaggtatgtttttattctat
ccgaactaatgttataaAACACCAAGGAGGCCCTGACTGTGTAGatgaaa
gattaaatttgcttctcttgaaaactaaaaataaatatattcgctcatct
cttagaacaagcacttcaaaaatccataacattagacataaactcaaact
gaaaaatcaccagcgaaggtaaaaaataatccttattaacggctgacggt
aaattattctcctgggaatagagccgccaaatgattaaatcaaaacattg
ataatgtgtgacgtcataattactgcttttagtttgcgtgttttgaaagt
ttgatgtgtgtactctgTCTTTGTGGAATTTCTtgatggcatgaaaacag
aatatgctatgtcttctAAAAGTTCTtgctgttctgtaaatatttctttt
tggattaaaaaattccatcttttattgttctaatgattataatatttatt
tataagatgctttgttgtctttttaatctttgtgtaaacttgcatatgtt
ttgcataatttctaactaaatccaaccacgtctttttcgttcctgtattt
ttgcatacaattcaagatgggggatggaaaggcgaaaaggtctattgttg
gTAACTTACATCATCATCAGTGGAGACTAacatacatagccctcaaatga
atgacctagCTGGCAGTCTAAggttaaactcctatatcaggattagaaac
taggctagtcttccctcttttatctttccctttacaacaatacaatgctg
acaagttgacacattgacaagtaatccctgtgagagaagtttatatcgaa
atctgcaacaaaaacgaaagtggtctcttctactgattgcttcccggcAC
TCCTTCACAGCTGTTtgtcaaatttccaccaatgtgATTGCTGCATTTTa
cacggcccttctttttggcacctgtggcttctcagtgccttgcatgacgg
gcggctgtaaaaaTCCCACCCtttatatatttgtttcaatccatgATTCT
AAGGCTTagattttttctcatcttcaatttactgaagaaaataggaattt
gatgcgagagcagggcaagagttagattgtcaacaaagtgccgtaaaaaa
tcattgaataaagaagaactttaaatcttaaatattttcattttgaagaa
ttggtgcaaaaaagtgaaacatggaaaagtttcattttttattggttcaa
tcAAAATAAGggatttgaaaaactttttatgtttgtttttttgcacaaac
ccctgtaactatgggtgagcaccccgttgctaagatgttggcttgaaatc
gaaagtgaaaccactgaaaatgaaagtaaaattggcCTGCACTCCAAAtt
ccgtaatcttgatataggagtttaagcatAGAGTGGCTGGTCATAAAAAT
ACAAAGTTGCTGATGACATCATGTGCTCCATAGTGATGCAATGatattct
tcttcatttttgagGAGGGCAGGAAAGTTAAAAATGGTACCAAGATTTAG
CTCATGAAAGCTACCATTCTTATTTGCAAACTTTGAAAGCCCCACTTGCT
ATCAATTGCTTTCCTTGATCttttactattttcttttgttcaattgggca
atttttttataaaaattttagcTCAAAATTGCACAGTGAGCTGGACTGTT
TGATGGTAGATGCAATTACCAATTTGACTCCATAAATTAGCAGTGAGAAC
ATAACATAATGACTTCAAACTGtatagctctaaagctctaaaagagCATC
CAGTAACATGAAAGTCAAAATGGAAAGGCGCTGTGGTaaagtggtcattg
acctttgtttctgcacaggcgactgaggtttgATTCcaactcgcagcggt
tcacttggcaagtgaatgaaccttcggcCGGGTCAACCcttgccatgtga
ggggaattgggtagttaGTTCAAGGTGATGACAGGCGCTAATTGAAAGCG
TCTTTAGTTGCAAAAATGGGCCTTTAGGCCTCCTGCGACTCaaacaaata
gaaatagaaatgggAATCAAACGATAAAATACACTCACAAACATTAATTT
ATCAGATAATGTACAAAATCAataacaaaagattttctgtcaagaacctt
gtaaacattccaacaacttccattgaaATGATCTGCGGCAGCTAAGTTTT
ACCATCATAACATCATACCGCTAGTTAGTCTAATATTGACATCTCTCATC
TAAGAATATCCCCCATCTAATTCTCTTTTAATTCCATTTTTAAAGATAGA
TAGAAGACCTGATTGAATATTGCAGGAAATGCTAAATTTATACAGAAAAG
GAAGTCCTAGTGAAGGGATATTCCTTTCTTGGGATCCCCCTTCGTTGGTC
TTTTTCAGAGTTAAAAGCATTCATCTATGCATTGATTTATTACATCAGAT
AAAAAGATTTAACATCATTATTATAAAGTGCAACTTTTTTCATAACTACA
TAGTGTCCTCCCTCCTCCTCCCTCTGGGATTTGTTTCAGAGGGGGCAAAG
ggattttttattaattttaaggGGGAGCTAACCTAACAGGACACTATGAA
CGACGTATTGATGACTAGCTTCTTTTTACAGAGGATGACTGTTTCTGTAT
TGAGCAGTCAAGGAATTACTCATTAGAAATGTCTTACGTTGTAGCTTATC
CAGCTTGCAATATACTAACACACAGTTTTTTTGGATCAAGTATGAAATCC
GGGGTGAGGTCAACAAGGGAACAAGGTCAGTGACTCACACCTCATCCACA
ATGTGTGGATGAGGTGTGATCAAGgctgataaccactacactactgcgcc
taTGTATTACATTGCACTCTGCTAATTTTGAACTGTAGCAGACTGTAGCA
ATATTGATAAACTGTTGAttcttttaaacaatttttaggCAGATCCATGG
AGCCTTGAGAACTTTTTACCAACCAAATGTTGTCCAATCAAGACATTTCT
TTAATGTCGACCCCTCACAATACTTTGGGGATAGAAGTAAAGAATATTCA
GAGACCAAAGCTATAGGGTAAGTTATATCTTATGATTTTGTACAACactg
attttttatatttaattcttttttaaattctgatTATACCACCTTTCTTA
ATGATATggcttttcattttcaaaaagataCGGTCatttcatttagtata
gtatACATCTCAAACGAAGCATAAGTGCTTTTATTAAAGATAAAAAGTTA
AATATACTTGGGTGACGATAGCTTAGAGCATTTGGCTGGGTTACAGTATA
CAAGATGTCAGAGGTTCAATCCAAGTTAGCCCTATAAAGGTCTGGATGTA
CTTGAATGTCTCTTTAACTATTAAATTTTTAGTGAGCCTGGGTTGGGGTA
TGCGCATAAAACCAGTGAGAAAGAGTGTCACTTTCTTCTACCTTTTAATA
GACAACATGATAGAAGAGTCTTCTGCATGTTCATCTGGAGTCTGAAGACt
tatcattttattattttcatttattcaCTGAGTTTAGAATAACTAAGAAA
TAAATCAGATCAATTCTTTTCTATCCACAGGTATTCTATGGAACAATTAT
ATGATGTCGTGGAGAATGTAGATGATTATAAATATTTTGTACCGTGGTGC
CGATCTTCTGTTGTCTTTGAGAAAAGTGAATCTCATGCAAGAGCCAATCT
TGAGGTTGGATTCCCACCAGTATCTGAAAAGTATACGTCTGTGCTAACAT
TAGCTAAACCCAATCTGGTAAAGGTATGTAAAACTCACTGCAAATTTTCC
TTTCGCTGATATTTTGTGGAACGGCACGAATTTGTCAAACAAAATTGTGT
TATCGAACTGATCAAACCAAATCCATACTTATCTGCTGTATGTAGTATGG
TGTgttgaaaatatattgaaaaaagttgtcttttAATACTTCTAAACTTT
TCCAATCAAAGCTTTTGATGACATAATATTCTGGTAGCAAAGTCTTCATC
TCTAAAAACCTTACGAAAATCTCTGTTAGAAGAGCATAACTCatgcatgg
cgttctaaatcaaGACGCTTTGCCATGGCATACCTTCattaagtttttta
aaaagcgATTGACATTTCCCGcgattttccccatttttttagcctttttt
gcATAAGGTAGGTCTTTTTTAATTAAcaatattaaatttttagtatttta
ttgTAATAATTTACGCACGTCaaactgttttaatttttttttgaaactac
aAATCGTGACAAATATCAATTGTTAACAACTATTTTTATAGGATACAAAT
GATAAATAACACTCATAATCCACTTTACGCTTTGAAAGTCTTAATTTGAT
TcagcaattcgcgaaagtttgtgcTCGTAATAATAATTTTCTCTCCAATC
CAAGAAAGTAAATGTCATAAAATTTCATGACTTTCGACCTCACGAAAGCT
CCTTCCTACTCGAGTGAAAATTTGTGTGCCTAAAGTTCTTTATTTCAAAA
TCGACTTGAGatggaaaaaataattataattgTAACGCAGGGATTGAATA
TGAATCATTCTCAACCTGTCTCCTTTTTTTTCAGTCGGAATGTATGGATG
GGTCACTATTCAATCACCTCCTGTGCGTTTGGAAGATTAGCAAAGGACCA
AGAGACGTACCAAACTCATGCACACTCAATTTTTATGTATAACTTCTTTA
TTTTACTAATATTTGACCCGGTGTGAAATCTATCAAtcgtttttcagcca
ttttaccCCTAATTTTTTGTAATGCTCTTGTGATTAAAGATTTTCGTTAG
CATCGTGAAATAAAGTATTAAAGGATAAAGAAGTCAAATTTATCGATACT
GGTTTAATTAGTCTTTAGTAATAATTTGGTCaccttatttctttttttga
tcattttcatgtCACATCCCAGTTAAACTTCTACTTGATCAtatattatc
aatttttttactacAGGTATCTTTCGAATTTAAATCACTTCTTCATTCTC
AACTTTCAACCATGTTNTTTTTTACTACAGGTATCTTTCGAATTTAAATC
ACTTCTTCATTCCCAACTTTCAACCATGTTCTTCGATGAAGTTGTACGTC
AGATGGTCAAAGCATTTGAAAGTCGTTGTGAGAAACTATACGGACCAAGC
AGTTTATTGAACACCAAACACACTAATAAACAAAGGAGAGGTATCACTAA
GTCAGATCTAAAAAAGAGGCAACAACAAATTATACAATCAAAAAAGGTTT
GATCagtttttctttattatatTAGATATTATCGGGAGTATAAATCTCAA
TCTTCTTCCTAATATTCTATAAAGCTCTGGCAAAATGTAGACAAGCTTCA
GTAAACATATTTAATATACGCTTTAAGTCATACTCAATGGTGGAGAATTC
ATTGAAATGAAAACAATTATAATTCATAAGACTACAGTTAATGAGGTTAA
TTCTGTGCTTCTAAACCTAGACGTAAAAccataccttatcgggggaaaaa
aTGTTGGGGGAAattgacgaatttgaaattttggccgGGGAAAGTGGCTA
ATTAAAACCCCGACATGAGAGGGTTTGAGAGTTTGAGAGATcgctttata
tttatttttaagtGACTCAACAGCAAAAACTCTAACTACTAAGCTCTAAC
CTGATactgttgttttgaaaatatacaaTGTTATTCTTTATAAAAGGTAT
TCATAAGTTGATAAAGTAGATACTAAGAAtgtgtaatttttttgtttgtt
tgttgtagATCATCGACGGAAGCAGTTGACGAAAATTGGATTATTGGtag
aattgaattgaatatagacgaaatttttaaaatgaaaagtaaagACTTTT
GAAACTGAAGAAGCAGTATACTACAATCGATTCGTGTCGAGattacaaaa
tgaaaatggaactaaagtctgtccagatataattggcagtggaaacaaga
aggcctgtaactttttataatcaaatataattatggaaattttttttgct
tgttttagagagtcaaaagtgctatatttgaatgtatttttggtagaaaa
tttcgcgaattttattagttaaatttgcgattgcaaaaattgagcttttt
ttctacttatcctataacgttcatttttacaccagtggtagttcaacctt
tggttaagaagtttgttaaatttcaaggcaaacagaaaggtccttcggaa
gatatgctacccgaaatacccctcggtagcacttttctgtgaaatatcaa
atctccaacttattactaaaaacgggggttatgttatcttttttgaacag
tgcaattaaaagttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNattggtattattggtatcattgattatttc
gaaacgaagtgaaatcacagtataattgtttttattgaaaagataagcat
gaatttatattgcctttgttatttttaagtcattaaagaacttagctaat
tcccaaaacactaaacacagtttggttATGAgatcattaaagagatcgta
aaatgtgttatgatcgaaaaactgttttataaatcatatcactacccccg
tttttagtaataagttggagatttgatatttcacagaaaagtgctaccaa
ggggtatttcgggtcccatatcttctgaaagacttttttgtttgccttaa
tttaacaaacttcttaacctaaggttgaactaccactggtgtaaaaataa
aagttatagcataagtagaaaataagctcaatttttacaatcgcaaattt
gaccgataaaaatcgcgaatttttcaaccaaaaatacattcaaatatagc
acttttgattctctgaaacaagaaaaaaatttccataattatatttgact
atcaaaagttacaggcattcttgtttccaatGCCAATTATATTTGGACAG
ACTTTAAGTGATAAATTGTAtagattgatttaattattcaacacaaATTT
TATAGTgtaacctttttatttttggaagTTTAGCTGATAGCTGATGGCAA
TCTCCTAAAACAGGATTTTTTAAGGCAGATAATTAACCATACAAATATTG
AACGCTTCACCAGGCTGAGATATGGATTCGTTGAGTAGTCTCAAACAGAT
TTCGGTTTCACAAAGTATTTCAAGAATACACTCTTCTCCAGTGAATTCGG
CCCTCGTGTTTAAGTATTTTTGACGACaatgttcttttgttttaaaattg
aaaactgCCGTCTTTGACCTCTACtgtcgggtacctaatagccggggggc
gctaattaatttttcacccaggacattcttattccaaccccccccccccc
ccttttaaagtgttttgttttttcccccccccccccccccgcttattaag
ttttgagattttttccaaccccctagtgagttccactttgacgattttca
aaaaatagaagcctttcaagtgctttgaacgcaaattagatttttttttc
tactgtaggagcttcgaaagttaaaagtgacgtcaaaaaattgaatgttt
agagcccgaaaacccaggctcaaaacattagaaaaagtcgcaaagtgaaa
tagacgttaattgcgtagaaaaaacgcgggttacgtctagtataggctac
caACACCCtacttattccaaacccccggctattaggtacccgagagtagg
tagATTTGATATTAGACGATTCTGATTGTAAACGAGACGTGCAATGCTTT
AAAatcaatcttgagaaaagtgTATGCAACTATTTGgatattctaaaata
tttttgcatgCATGTTCTTAAATGAGAATATGTTCTCAgttaaatatttt
agtgaaagtaaatatttttttgaatattccagagtttatataaaaacaat
ttagATCCCTCTCGATTATATATCCCTCGCAcgtacttttttatcaaaat
aattttacattgtatttatttttattgtagtTTGTACTATATCACTGATG
ACAGAGAAAAACCTAGTATGAAACAAAGATTAGTTATTTTTCTGCTGCTA
AACATTGCCACTCTTTTAAATtggtttttgcaataaaaatgtttaagaat
atttttctagggaaaaatctttacaaaacaCTTCATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015828XLOC_015828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027973-exon-sc0000660-1491911889:56673..58645TCONS_00027973-exon-sc0000660-1491911889:56673..58645Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1510915933:56673..58645TCONS_00027973-exon-sc0000660-1510915933:56673..58645Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1575043694:56673..58645TCONS_00027973-exon-sc0000660-1575043694:56673..58645Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1491911889:65061..65189TCONS_00027973-exon-sc0000660-1491911889:65061..65189Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1510915933:65061..65189TCONS_00027973-exon-sc0000660-1510915933:65061..65189Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1575043694:65061..65189TCONS_00027973-exon-sc0000660-1575043694:65061..65189Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1491911889:65703..65895TCONS_00027973-exon-sc0000660-1491911889:65703..65895Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1510915933:65703..65895TCONS_00027973-exon-sc0000660-1510915933:65703..65895Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1575043694:65703..65895TCONS_00027973-exon-sc0000660-1575043694:65703..65895Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1491911889:66707..66808TCONS_00027973-exon-sc0000660-1491911889:66707..66808Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1510915933:66707..66808TCONS_00027973-exon-sc0000660-1510915933:66707..66808Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1575043694:66707..66808TCONS_00027973-exon-sc0000660-1575043694:66707..66808Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1491911889:67153..67368TCONS_00027973-exon-sc0000660-1491911889:67153..67368Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1510915933:67153..67368TCONS_00027973-exon-sc0000660-1510915933:67153..67368Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1575043694:67153..67368TCONS_00027973-exon-sc0000660-1575043694:67153..67368Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1491911889:67881..68038TCONS_00027973-exon-sc0000660-1491911889:67881..68038Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1510915933:67881..68038TCONS_00027973-exon-sc0000660-1510915933:67881..68038Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1575043694:67881..68038TCONS_00027973-exon-sc0000660-1575043694:67881..68038Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1491911889:69081..70262TCONS_00027973-exon-sc0000660-1491911889:69081..70262Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1510915933:69081..70262TCONS_00027973-exon-sc0000660-1510915933:69081..70262Clytia hemisphaericaexon
TCONS_00027973-exon-sc0000660-1575043694:69081..70262TCONS_00027973-exon-sc0000660-1575043694:69081..70262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:56673..70262 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.66682e-05	3.43847	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.93267e-06	0	0	1.66212e-07	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007594RFT1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005319lipid transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006869lipid transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005319 lipid transporter activity
Blast
[Close]
BLAST of TCONS_00027973 vs. Swiss-Prot (Human)
Match: RFT1 (Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.665e-77
Identity = 145/334 (43.41%), Postives = 206/334 (61.68%), Query Frame = -2 
Query:  509 MASKGQEMKDAVKSASYNMVLQVIFRLSTFSMNAIMLRYLSREVLGVMNVRLMLLYSTMLFISREAFRKACLSQQSIKENVEQIKLKQMINLTWICSIVGLFSSFVLIFIWTSWLPQPKDDLIWQYQMATILVAASCSFELAVEPFWILAQRNSLLSLKVMFEGVYLAVRCFISTFLVVFFPDKALVMYGVTFVLAAIVYSLCYAIYFWKYLTKDDSKKTKELSQFKQFADFLPNI-RSKPLFHQDYVNLVTSFYKQSMLKQFLTEGERYIMTIFGILTFSEQGVYDVINNLGSLAARFIFMPIEETYYTYFSKILLRGIRANEQKKESLDEAA 1507
            M S+ + +  A + AS  ++LQV+FRL TF +NA +LR+LS+E++GV+NVRL LLYST LF++REAFR+ACLS  +      Q    Q +NL W+   +G+F S  L +IW   L  P  +++  Y    +L   S   EL  EPFW+LAQ +  + LKV+ E + + ++  ++ FLV++ P   L ++ +  +    V  LCY IYF K L   +S K + L    +  D LPNI R+    +     L  SF+KQS LKQ LTEGERY+MT   +L F +QGVYD++NNLGSL AR IF PIEE++Y +F+K+L RG  A  QK+E +  AA
Sbjct:    1 MGSQ-EVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRACLSGGT------QRDWSQTLNLLWLTVPLGVFWSLFLGWIWLQLLEVPDPNVVPHYATGVVLFGLSAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVLWLPHWGLYIFSLAQLFYTTVLVLCYVIYFTKLLGSPESTKLQTLP-VSRITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAA 326
The following BLAST results are available for this feature:
BLAST of TCONS_00027973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFT12.665e-7743.41Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 ... [more]
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