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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027974 ID=TCONS_00027974|Name=TCONS_00027974|organism=Clytia hemisphaerica|type=transcript|length=1644bp
gaaaaaataacttttaaaaaacaTGAACAAAGCAttacaattgattttta
ctGCTGCATTGGATTCGATCAGACCGGAAAATTTGGTAAAGAACGCGCTT
CAACGAAATGGCAATCTGATGACCATCAAGGATAGAAGTTACTTGCTGAA
TAAGAACGTTCATGTCATTGGATTTGGGAAAGCTGTCTATGGTATGGCCC
TGGGTGTGTCAGACATTCTAAATGATCACGTGAACAAAACTGTATTAAGT
GTTCCAATCGGTACAATAAAGAGACGCGAGAATGTAAAATTTCACTCAAA
GTACACTATAATGGAGGGTGCTAAAGACAACCTACCAGATCAAGATGCCC
AAAACGCCGCGATGGAGATACGTAATTTGGTGACTCGGTTATCGCCAGAT
GATATTTTACTAGTCCTCATATCTGGGGGCGGATCCGCACTGCTACCAGC
AGCTTTGGAAGGAATGACGCTTTcccaaaaattggaaatcatCAAACTCG
TGGCTAGCGCTGGTGGAAATATCAATCAATTGAATACTATAAGAAAACAT
CTATCACAACTTAAAGGAGGTAAATTAGCTATTTTATCTCCATCATGTAA
TATTATCTCCTTAATAATATCAGACATCGTTGGTGACCCATTAGATTTGA
TTGCATCTGCACCAACTGTCTTTGATCCATCGACTGGTGAAGATTGTTTG
AAGATACTGAAAGATCTTAACATTGATCACAAGATCCCTGATAAAATTAA
ATGTATATTTTCAAGACTCGAATCTAACCTTAATAACAAGGAGATTATCG
AAACAAAATGTCTAAACACCATTATTGGAAACAACGATATAGCCCTGCAA
GCTGCTGCATCGGCTGCTCAAGAGTATGGTTTTGAAACATTGATTTTATC
CTCGACCATCCAGGGAGATGCTAGTCAAGTAGGAAAGTACATGGCAGAGC
TTGCTTTAAATGTCCTACAAAATCAACAAGAAAATATAAGTAATACTTTG
AAACAACTTGATATTGAGGATCATGTAATTATTAACCTAAAACATATACT
TCAAAACCATCGGGGaaatttatgtttgatttttggtGGTGAAACTACAG
TTCGGGTGGATGGtcaagggcgtggtgggcggaaTCAGCATCTCGTTTTA
TCCGCccttaaaaatcttttacaaagttCTAGTTCACTGGACTTATCTAA
AGTGACCTTTCTCAGTGCTGGAACCGACGGTCAGGATGGACCCACAGATG
CTGCTGGGGCATGGATTGATGTGAATCTAGTGAACCATTGTGTAGATAAA
TTGGATACAGTGAATCGTTATTTAGATGATTGTGGCTCCTACGATTTCTT
TAACTCTAATAAgtttttgaaacaatatttATTGCAACCTGGTCTTACAG
GAACTAATGTGATGGATATACAAGTCATTCTTATACACCAAACGTAAATT
TTGCCCACGAACTGAATTTGCTTGATTCAGATCGATATCCAATTTAATGT
AGATCTATATTTTACTCCATCtggatggttatgatttttaaagttaattt
ttttagattttgatattttcctgCGAAATTCAAGCCTTTatcccaatttt
ttttcacaactCATTCTTATACGCCAACCGTGTAAATATTGCCC Run BLAST on NCBI protein sequence of TCONS_00027974-protein >TCONS_00027974-protein ID=TCONS_00027974-protein|Name=TCONS_00027974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MNKALQLIFTAALDSIRPENLVKNALQRNGNLMTIKDRSYLLNKNVHVIG
FGKAVYGMALGVSDILNDHVNKTVLSVPIGTIKRRENVKFHSKYTIMEGA
KDNLPDQDAQNAAMEIRNLVTRLSPDDILLVLISGGGSALLPAALEGMTL
SQKLEIIKLVASAGGNINQLNTIRKHLSQLKGGKLAILSPSCNIISLIIS
DIVGDPLDLIASAPTVFDPSTGEDCLKILKDLNIDHKIPDKIKCIFSRLE
SNLNNKEIIETKCLNTIIGNNDIALQAAASAAQEYGFETLILSSTIQGDA
SQVGKYMAELALNVLQNQQENISNTLKQLDIEDHVIINLKHILQNHRGNL
CLIFGGETTVRVDGQGRGGRNQHLVLSALKNLLQSSSSLDLSKVTFLSAG
TDGQDGPTDAAGAWIDVNLVNHCVDKLDTVNRYLDDCGSYDFFNSNKFLK
QYLLQPGLTGTNVMDIQVILIHQT Run BLAST on NCBI transcript from alignment at sc0000660:70428..72632+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027974 ID=TCONS_00027974|Name=TCONS_00027974|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0000660:70428..72632+ (Clytia hemisphaerica)
gaaaaaataacttttaaaaaacaTGAACAAAGCAttacaattgattttta
ctGCTGCATTGGATTCGATCAGACCGGAAAATTTGGTAAAGAACGCGCTT
CAACGAAATGGCAATCTGATGACCATCAAGGATAGAAGTTACTTGCTGAA
TAAGAACGTTCATGTCATTGGATTTGGGAAAGCTGTCTATGGTAGGTTTA
CCTTtggttctacttttttcatggTGTTCTAAATTTGAACGCCTTGCAAA
CACTCGCCTCCGTCAATTTTATCGAGGTTGATTCATTATtacgttcgaat
gttttcgAAGTCGCTGCGTTGCTGATTCGAAAAAAAACTCTGCAGCGTCA
AATGTTAGAACGCCATGCTTTTCTAGAAAAACTTTTACTCCCACACATCC
AATGGgtaaatgatttttattttccattcaAGTGAATGCCCATGGGTTGG
ATATCTTTTCCAAAGAGGATATACCCTTAAGAGTTGACGATCTTTTAAGC
GAGTCTCTGCTGTATTTTGggttattttcaaaatcaatatcCTAAAATAg
tggaaataaaatttttcagcaaagtcGTCAATTTAATTTAGACattattt
tggaatatttcctttaaaagaattcaaaatGGACAGTTGGGCAATTTATT
ATATATTGCTATGACGAAAAAATAATTGTACTTACAAAGGAACACGTTGA
CTCTTCTTGACGTCTTGCTGTTTTTCATCCAGTCTCTCTTTAACTTTTTA
AGGTATGGCCCTGGGTGTGTCAGACATTCTAAATGATCACGTGAACAAAA
CTGTATTAAGTGTTCCAATCGGTACAATAAAGAGACGCGAGAATGTAAAA
TTTCACTCAAAGTACACTATAATGGAGGGTGCTAAAGACAACCTACCAGA
TCAAGATGCCCAAAACGCCGCGATGGAGATACGTAATTTGGTGACTCGGT
TATCGCCAGATGATATTTTACTAGTCCTCATATCTGGGGGCGGATCCGCA
CTGCTACCAGCAGCTTTGGAAGGAATGACGCTTTcccaaaaattggaaat
catCAAACTCGTGGCTAGCGCTGGTGGAAATATCAATCAATTGAATACTA
TAAGAAAACATCTATCACAACTTAAAGGAGGTAAATTAGCTATTTTATCT
CCATCATGTAATATTATCTCCTTAATAATATCAGACATCGTTGGTGACCC
ATTAGATTTGATTGCATCTGCACCAACTGTCTTTGATCCATCGACTGGTG
AAGATTGTTTGAAGATACTGAAAGATCTTAACATTGATCACAAGATCCCT
GATAAAATTAAATGTATATTTTCAAGACTCGAATCTAACCTTAATAACAA
GGAGATTATCGAAACAAAATGTCTAAACACCATTATTGGAAACAACGATA
TAGCCCTGCAAGCTGCTGCATCGGCTGCTCAAGAGTATGGTTTTGAAACA
TTGATTTTATCCTCGACCATCCAGGGAGATGCTAGTCAAGTAGGAAAGTA
CATGGCAGAGCTTGCTTTAAATGTCCTACAAAATCAACAAGAAAATATAA
GTAATACTTTGAAACAACTTGATATTGAGGATCATGTAATTATTAACCTA
AAACATATACTTCAAAACCATCGGGGaaatttatgtttgatttttggtGG
TGAAACTACAGTTCGGGTGGATGGtcaagggcgtggtgggcggaaTCAGC
ATCTCGTTTTATCCGCccttaaaaatcttttacaaagttCTAGTTCACTG
GACTTATCTAAAGTGACCTTTCTCAGTGCTGGAACCGACGGTCAGGATGG
ACCCACAGATGCTGCTGGGGCATGGATTGATGTGAATCTAGTGAACCATT
GTGTAGATAAATTGGATACAGTGAATCGTTATTTAGATGATTGTGGCTCC
TACGATTTCTTTAACTCTAATAAgtttttgaaacaatatttATTGCAACC
TGGTCTTACAGGAACTAATGTGATGGATATACAAGTCATTCTTATACACC
AAACGTAAATTTTGCCCACGAACTGAATTTGCTTGATTCAGATCGATATC
CAATTTAATGTAGATCTATATTTTACTCCATCtggatggttatgattttt
aaagttaatttttttagattttgatattttcctgCGAAATTCAAGCCTTT
atcccaattttttttcacaactCATTCTTATACGCCAACCGTGTAAATAT
TGCCC Coding sequence (CDS) from alignment at sc0000660:70428..72632+ >TCONS_00027974 ID=TCONS_00027974|Name=TCONS_00027974|organism=Clytia hemisphaerica|type=CDS|length=2850bp|location=Sequence derived from alignment at sc0000660:70428..72632+ (Clytia hemisphaerica)
aTGAACAAAGCAttacaattgatttttactGCTGCATTGGATTCGATCAG
ACCGGAAAATTTGGTAAAGAACGCGCTTCAACGAAATGGCAATCTGATGA
CCATCAAGGATAGAAGTTACTTGCTGAATAAGAACGTTCATGTCATTGGA
TTTGGGAAAGCTGTCTATGGTATGGCCCTGGGTGTGTCAGACATTCTAAA
TGATCACGTGAACAAAACTGTATTAAGTGTTCCAATCGGTACAATAAAGA
GACGCGAGAATGTAAAATTTCACTCAAAGTACACTATAATGGAGGGTGCT
AAAGACAACCTACCAGATCAAGATGCCCAAAACGCCGCGATGGAGATACG
TAATTTGGTGACTCGGTTATCGCCAGATGATATTTTACTAGTCCTCATAT
CTGGGGGCGGATCCGCACTGCTACCAGCAGCTTTGGAAGGAATGACGCTT
TcccaaaaattggaaatcatCAAACTCGTGGCTAGCGCTGGTGGAAATAT
CAATCAATTGAATACTATAAGAAAACATCTATCACAACTTAAAGGAGGTA
AATTAGCTATTTTATCTCCATCATGTAATATTATCTCCTTAATAATATCA
GACATCGTTGGTGACCCATTAGATTTGATTGCATCTGCACCAACTGTCTT
TGATCCATCGACTGGTGAAGATTGTTTGAAGATACTGAAAGATCTTAACA
TTGATCACAAGATCCCTGATAAAATTAAATGTATATTTTCAAGACTCGAA
TCTAACCTTAATAACAAGGAGATTATCGAAACAAAATGTCTAAACACCAT
TATTGGAAACAACGATATAGCCCTGCAAGCTGCTGCATCGGCTGCTCAAG
AGTATGGTTTTGAAACATTGATTTTATCCTCGACCATCCAGGGAGATGCT
AGTCAAGTAGGAAAGTACATGGCAGAGCTTGCTTTAAATGTCCTACAAAA
TCAACAAGAAAATATAAGTAATACTTTGAAACAACTTGATATTGAGGATC
ATGTAATTATTAACCTAAAACATATACTTCAAAACCATCGGGGaaattta
tgtttgatttttggtGGTGAAACTACAGTTCGGGTGGATGGtcaagggcg
tggtgggcggaaTCAGCATCTCGTTTTATCCGCccttaaaaatcttttac
aaagttCTAGTTCACTGGACTTATCTAAAGTGACCTTTCTCAGTGCTGGA
ACCGACGGTCAGGATGGACCCACAGATGCTGCTGGGGCATGGATTGATGT
GAATCTAGTGAACCATTGTGTAGATAAATTGGATACAGTGAATCGTTATT
TAGATGATTGTGGCTCCTACGATTTCTTTAACTCTAATAAgtttttgaaa
caatatttATTGCAACCTGGTCTTACAGGAACTAATGTGATGGATATACA
AGTCATTCTTATACACCAAACGTAAaTGAACAAAGCAttacaattgattt
ttactGCTGCATTGGATTCGATCAGACCGGAAAATTTGGTAAAGAACGCG
CTTCAACGAAATGGCAATCTGATGACCATCAAGGATAGAAGTTACTTGCT
GAATAAGAACGTTCATGTCATTGGATTTGGGAAAGCTGTCTATGGTATGG
CCCTGGGTGTGTCAGACATTCTAAATGATCACGTGAACAAAACTGTATTA
AGTGTTCCAATCGGTACAATAAAGAGACGCGAGAATGTAAAATTTCACTC
AAAGTACACTATAATGGAGGGTGCTAAAGACAACCTACCAGATCAAGATG
CCCAAAACGCCGCGATGGAGATACGTAATTTGGTGACTCGGTTATCGCCA
GATGATATTTTACTAGTCCTCATATCTGGGGGCGGATCCGCACTGCTACC
AGCAGCTTTGGAAGGAATGACGCTTTcccaaaaattggaaatcatCAAAC
TCGTGGCTAGCGCTGGTGGAAATATCAATCAATTGAATACTATAAGAAAA
CATCTATCACAACTTAAAGGAGGTAAATTAGCTATTTTATCTCCATCATG
TAATATTATCTCCTTAATAATATCAGACATCGTTGGTGACCCATTAGATT
TGATTGCATCTGCACCAACTGTCTTTGATCCATCGACTGGTGAAGATTGT
TTGAAGATACTGAAAGATCTTAACATTGATCACAAGATCCCTGATAAAAT
TAAATGTATATTTTCAAGACTCGAATCTAACCTTAATAACAAGGAGATTA
TCGAAACAAAATGTCTAAACACCATTATTGGAAACAACGATATAGCCCTG
CAAGCTGCTGCATCGGCTGCTCAAGAGTATGGTTTTGAAACATTGATTTT
ATCCTCGACCATCCAGGGAGATGCTAGTCAAGTAGGAAAGTACATGGCAG
AGCTTGCTTTAAATGTCCTACAAAATCAACAAGAAAATATAAGTAATACT
TTGAAACAACTTGATATTGAGGATCATGTAATTATTAACCTAAAACATAT
ACTTCAAAACCATCGGGGaaatttatgtttgatttttggtGGTGAAACTA
CAGTTCGGGTGGATGGtcaagggcgtggtgggcggaaTCAGCATCTCGTT
TTATCCGCccttaaaaatcttttacaaagttCTAGTTCACTGGACTTATC
TAAAGTGACCTTTCTCAGTGCTGGAACCGACGGTCAGGATGGACCCACAG
ATGCTGCTGGGGCATGGATTGATGTGAATCTAGTGAACCATTGTGTAGAT
AAATTGGATACAGTGAATCGTTATTTAGATGATTGTGGCTCCTACGATTT
CTTTAACTCTAATAAgtttttgaaacaatatttATTGCAACCTGGTCTTA
CAGGAACTAATGTGATGGATATACAAGTCATTCTTATACACCAAACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00027974-exon-sc0000660-1491911889:70428..70618 | TCONS_00027974-exon-sc0000660-1491911889:70428..70618 | Clytia hemisphaerica | exon |
| TCONS_00027974-exon-sc0000660-1510915933:70428..70618 | TCONS_00027974-exon-sc0000660-1510915933:70428..70618 | Clytia hemisphaerica | exon |
| TCONS_00027974-exon-sc0000660-1575043694:70428..70618 | TCONS_00027974-exon-sc0000660-1575043694:70428..70618 | Clytia hemisphaerica | exon |
| TCONS_00027974-exon-sc0000660-1491911889:71180..72632 | TCONS_00027974-exon-sc0000660-1491911889:71180..72632 | Clytia hemisphaerica | exon |
| TCONS_00027974-exon-sc0000660-1510915933:71180..72632 | TCONS_00027974-exon-sc0000660-1510915933:71180..72632 | Clytia hemisphaerica | exon |
| TCONS_00027974-exon-sc0000660-1575043694:71180..72632 | TCONS_00027974-exon-sc0000660-1575043694:71180..72632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000660 | supercontig | sc0000660:70428..72632 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00027974 vs. Swiss-Prot (Human)
Match: GLCTK (Glycerate kinase OS=Homo sapiens GN=GLYCTK PE=1 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 1.875e-98 Identity = 183/484 (37.81%), Postives = 276/484 (57.02%), Query Frame = 2
Query: 44 IFTAALDSIRPENLVKNALQ--RNGNLMTIKDRSYLLNKNVHVIGFGKAVYGMALGVSDILNDHVNKTVLSVPIGTIKRREN-------VKFHSKYTIMEGAKDNLPDQDAQNAAMEIRNLVTRLSPDDILLVLISGGGSALLPAALEGMTLSQKLEIIKLVASAGGNINQLNTIRKHLSQLKGGKLAILSPSCNIISLIISDIVGDPLDLIASAPTVFDPSTGEDCLKILKDLNIDHKIPDKIKCIFSRLESNLNNKEIIETKCLNTIIGNNDIXXXXXXXXXXEYGFETLILSSTIQGDASQVGKYMAELALNVLQNQQENISNTLKQLDIEDHVI--------INLKHILQNH---RGNLCLIFGGETTVRVDGQGRGGRNQHLVXXXXXXXXXXXXXXXXXKVTFLSAGTDGQDGPTDAAGAWIDVNLVNHCVDKLDTVNRYLDDCGSYDFFNSNKFLKQYLLQPGLTGTNVMDIQVILI 1435
+F +A+ ++ P ++ AL G + ++DR++ L +N++++GFGKAV GMA ++L H+ + V+SVP G E +K HS+ + EGA+DNLPD+DA AA+ I+ L L+ DD+LLVLISGGGSALLPA + +TL +K + +L+A+ G I +LNTIRK LSQLKGG LA + ++SLI+SD+VGDP+++IAS PTV +DCL IL + +P +K + SR +S+ + LN IIG+N +AL A A+ G++ ++LS+ +QGD + ++ LA +++ + D + H + + L+ L+ RG +CL+ GGE TV++ G GRGGRNQ L L V FLS GTDGQDGPT+AAGAW+ L + + + +L S+ FF + +LL G+TGTNVMD ++ +
Sbjct: 41 LFESAVGAVLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTRLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVVSLILSDVVGDPVEVIASGPTVASSHNVQDCLHILNRYGLRAALPRSVKTVLSRADSDPHGPHTC-GHVLNVIIGSNVLALAEAQRQAEALGYQAVVLSAAMQGDVKSMAQFYGLLAHVARTRLTPSMAGASVEEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRGGRNQELA--LRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQAAAEGLDIATFLAHNDSHTFFCCLQG-GAHLLHTGMTGTNVMDTHLLFL 520
The following BLAST results are available for this feature:
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