TCONS_00027976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027976
Unique NameTCONS_00027976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027976 ID=TCONS_00027976|Name=TCONS_00027976|organism=Clytia hemisphaerica|type=transcript|length=1155bp
ATTTTTATGTGCATGGGAGTGGAATGTGCTCAGGAAAGCATCGGATTAAT
AGAAAAATACGACGAAAAATGAAGGCAAGTTTTCGTGATAAATATATCGA
GATTTGTGAGAACACTTTACAAAGCCCTGGTGGTGGTGGTTACACAGTGA
AAGGAACTTTACTATCACATTTGAAACTAAACGTGTGCCCTGTTGTTGAG
TGTGGAAAAACGGAACCTGAAAGAGAATCTACAAAGAAAAAGCCATTGGA
AAAACAACGATCTTCTTTACAGCGGAAACAATGTTTAAGACGCAACACGG
ACCATCGTAGTCGCGCGGAAAAGGCGCGTAGCATTGCAGTTTACGAACGT
AAGATCGGTAATACGAGTGATACTGATTTAAGTAAAACACAACTTGCAAC
AGACGATGGTTATTTGATTCCGCAAGAAATTCAAGAGCAGATTTTAAAAG
CAAGACAAGCCAGTAGGAATCGAGTGGAGCAACCCCGTGAGAGTTTCGTA
GACGATAATAATAACATACTTGGCACGTTCATTAATGTGTCGTATCGTGA
TAGCAAACGTGGAATTAAGGTAGACACTAAAGGGCCTGTCCATCCGTACG
TCCAAGTCAAGCACCGTACCATACATCGTATGTCGAGTGACGGACGTGAA
GTCGTAGATTCGCAAGACGACTTTAGCGAAGATGAGGAGAACCCATACTC
GACGGCTCGTGAATTGGACGAAGAACTAAGAACTCTCCCACGATATCACA
TCATTGATGATGAGCAGTGTAGTGGACTCTGTATACACGACATCATGATT
GAGGATTGTACTGAATGTGAGAGTGAGCCCGTGTATTCGGAGCCTTCAAG
CTGTACTGGAGACGAAGAAGACACGTATCGAGAGCTTTGTTTCGATACGG
ACAAACTACCGGAAGAGTATTTAACACGCACGactgttttaaaaacaaat
agtAACGAGTCCAGTTCAACGTCTCTTGACGAGGTCGATGGTATTACAGC
TTCTATAGAACCTTTTTATTATGTTTTGGAAGAACAGATGAAGGACGAAT
TATTGAAAAGGAGAAATTCTTCTTCAGCGAAGAAAGCGCTACCTGATATT
GTGGAGGATAATGAGAGTGAAGAGATTTTCGTTTGAGAAGTTATCAGAAA
CGTGT
Run BLAST on NCBI

protein sequence of TCONS_00027976-protein

>TCONS_00027976-protein ID=TCONS_00027976-protein|Name=TCONS_00027976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
FYVHGSGMCSGKHRINRKIRRKMKASFRDKYIEICENTLQSPGGGGYTVK
GTLLSHLKLNVCPVVECGKTEPERESTKKKPLEKQRSSLQRKQCLRRNTD
HRSRAEKARSIAVYERKIGNTSDTDLSKTQLATDDGYLIPQEIQEQILKA
RQASRNRVEQPRESFVDDNNNILGTFINVSYRDSKRGIKVDTKGPVHPYV
QVKHRTIHRMSSDGREVVDSQDDFSEDEENPYSTARELDEELRTLPRYHI
IDDEQCSGLCIHDIMIEDCTECESEPVYSEPSSCTGDEEDTYRELCFDTD
KLPEEYLTRTTVLKTNSNESSSTSLDEVDGITASIEPFYYVLEEQMKDEL
LKRRNSSSAKKALPDIVEDNESEEIFV
Run BLAST on NCBI

transcript from alignment at sc0000660:103203..104757+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027976 ID=TCONS_00027976|Name=TCONS_00027976|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at sc0000660:103203..104757+ (Clytia hemisphaerica)
ATTTTTATGTGCATGGGAGTGGAATGTGCTCAGGAAAGCATCGGATTAAG
TAATAAGTCCAATTTGTGATTAGGGACTGAttaaaatgttcattttttga
tgatttttgtagAAACGGTTTCAGCTTAACTCTTTCAATTAtgtaagaag
aaaaaaataaaaatccaacTTTCTGTGACGTCACATAGTTTGAATGACGT
TTTTTAATTGGACTAACCTGAAATAATGAATAAGTGGGCTTCGAACTATT
TGATACTTAATCATCTTTTAATTGATTTGAGAATTCAGTTCATCATTAAG
CAGTAGAGAGTTAAGACGGAAAAAGGAAGGTAATATATTCCTTTCGCATT
ACATTTAAAAGCTATTTCTATGTGTAATTTCAGTAGAAAAATACGACGAA
AAATGAAGGCAAGTTTTCGTGATAAATATATCGAGATTTGTGAGAACACT
TTACAAAGCCCTGGTGGTGGTGGTTACACAGTGAAAGGAACTTTACTATC
ACATTTGAAACTAAACGTGTGCCCTGTTGTTGAGTGTGGAAAAACGGAAC
CTGAAAGAGAATCTACAAAGAAAAAGCCATTGGAAAAACAACGATCTTCT
TTACAGCGGAAACAATGTTTAAGACGCAACACGGACCATCGTAGTCGCGC
GGAAAAGGCGCGTAGCATTGCAGTTTACGAACGTAAGATCGGTAATACGA
GTGATACTGATTTAAGTAAAACACAACTTGCAACAGACGATGGTTATTTG
ATTCCGCAAGAAATTCAAGAGCAGATTTTAAAAGCAAGACAAGCCAGTAG
GAATCGAGTGGAGCAACCCCGTGAGAGTTTCGTAGACGATAATAATAACA
TACTTGGCACGTTCATTAATGTGTCGTATCGTGATAGCAAACGTGGAATT
AAGGTAGACACTAAAGGGCCTGTCCATCCGTACGTCCAAGTCAAGCACCG
TACCATACATCGTATGTCGAGTGACGGACGTGAAGTCGTAGATTCGCAAG
ACGACTTTAGCGAAGATGAGGAGAACCCATACTCGACGGCTCGTGAATTG
GACGAAGAACTAAGAACTCTCCCACGATATCACATCATTGATGATGATCA
GTGTAGTGGACTCTGTATACACGACATCATGNCTCTCCCACGATATTACA
TCATTGATGATGAGCAGTGTAGTGGACTCTGTATACACGACATCATGATT
GAGGATTGTACTGAATGTGAGAGTGAGCCCGTGTATTCGGAGCCTTCAAG
CTGTACTGGAGACGAAGAAGACACGTATCGAGAGCTTTGTTTCGATACGG
ACAAACTACCGGAAGAGTATTTAACACGCACGactgttttaaaaacaaat
agtAACGAGTCCAGTTCAACGTCTCTTGACGAGGTCGATGGTATTACAGC
TTCTATAGAACCTTTTTATTATGTTTTGGAAGAACAGATGAAGGACGAAT
TATTGAAAAGGAGAAATTCTTCTTCAGCGAAGAAAGCGCTACCTGATATT
GTGGAGGATAATGAGAGTGAAGAGATTTTCGTTTGAGAAGTTATCAGAAA
CGTGT

Coding sequence (CDS) from alignment at sc0000660:103203..104757+

>TCONS_00027976 ID=TCONS_00027976|Name=TCONS_00027976|organism=Clytia hemisphaerica|type=CDS|length=3402bp|location=Sequence derived from alignment at sc0000660:103203..104757+ (Clytia hemisphaerica)
TTTTATGTGCATGGGAGTGGAATGTGCTCAGGAAAGCATCGGATTAATAG
AAAAATACGACGAAAAATGAAGGCAAGTTTTCGTGATAAATATATCGAGA
TTTGTGAGAACACTTTACAAAGCCCTGGTGGTGGTGGTTACACAGTGAAA
GGAACTTTACTATCACATTTGAAACTAAACGTGTGCCCTGTTGTTGAGTG
TGGAAAAACGGAACCTGAAAGAGAATCTACAAAGAAAAAGCCATTGGAAA
AACAACGATCTTCTTTACAGCGGAAACAATGTTTAAGACGCAACACGGAC
CATCGTAGTCGCGCGGAAAAGGCGCGTAGCATTGCAGTTTACGAACGTAA
GATCGGTAATACGAGTGATACTGATTTAAGTAAAACACAACTTGCAACAG
ACGATGGTTATTTGATTCCGCAAGAAATTCAAGAGCAGATTTTAAAAGCA
AGACAAGCCAGTAGGAATCGAGTGGAGCAACCCCGTGAGAGTTTCGTAGA
CGATAATAATAACATACTTGGCACGTTCATTAATGTGTCGTATCGTGATA
GCAAACGTGGAATTAAGGTAGACACTAAAGGGCCTGTCCATCCGTACGTC
CAAGTCAAGCACCGTACCATACATCGTATGTCGAGTGACGGACGTGAAGT
CGTAGATTCGCAAGACGACTTTAGCGAAGATGAGGAGAACCCATACTCGA
CGGCTCGTGAATTGGACGAAGAACTAAGAACTCTCCCACGATATCACATC
ATTGATGATGAGCAGTGTAGTGGACTCTGTATACACGACATCATGATTGA
GGATTGTACTGAATGTGAGAGTGAGCCCGTGTATTCGGAGCCTTCAAGCT
GTACTGGAGACGAAGAAGACACGTATCGAGAGCTTTGTTTCGATACGGAC
AAACTACCGGAAGAGTATTTAACACGCACGactgttttaaaaacaaatag
tAACGAGTCCAGTTCAACGTCTCTTGACGAGGTCGATGGTATTACAGCTT
CTATAGAACCTTTTTATTATGTTTTGGAAGAACAGATGAAGGACGAATTA
TTGAAAAGGAGAAATTCTTCTTCAGCGAAGAAAGCGCTACCTGATATTGT
GGAGGATAATGAGAGTGAAGAGATTTTCGTTTGATTTTATGTGCATGGGA
GTGGAATGTGCTCAGGAAAGCATCGGATTAATAGAAAAATACGACGAAAA
ATGAAGGCAAGTTTTCGTGATAAATATATCGAGATTTGTGAGAACACTTT
ACAAAGCCCTGGTGGTGGTGGTTACACAGTGAAAGGAACTTTACTATCAC
ATTTGAAACTAAACGTGTGCCCTGTTGTTGAGTGTGGAAAAACGGAACCT
GAAAGAGAATCTACAAAGAAAAAGCCATTGGAAAAACAACGATCTTCTTT
ACAGCGGAAACAATGTTTAAGACGCAACACGGACCATCGTAGTCGCGCGG
AAAAGGCGCGTAGCATTGCAGTTTACGAACGTAAGATCGGTAATACGAGT
GATACTGATTTAAGTAAAACACAACTTGCAACAGACGATGGTTATTTGAT
TCCGCAAGAAATTCAAGAGCAGATTTTAAAAGCAAGACAAGCCAGTAGGA
ATCGAGTGGAGCAACCCCGTGAGAGTTTCGTAGACGATAATAATAACATA
CTTGGCACGTTCATTAATGTGTCGTATCGTGATAGCAAACGTGGAATTAA
GGTAGACACTAAAGGGCCTGTCCATCCGTACGTCCAAGTCAAGCACCGTA
CCATACATCGTATGTCGAGTGACGGACGTGAAGTCGTAGATTCGCAAGAC
GACTTTAGCGAAGATGAGGAGAACCCATACTCGACGGCTCGTGAATTGGA
CGAAGAACTAAGAACTCTCCCACGATATCACATCATTGATGATGAGCAGT
GTAGTGGACTCTGTATACACGACATCATGATTGAGGATTGTACTGAATGT
GAGAGTGAGCCCGTGTATTCGGAGCCTTCAAGCTGTACTGGAGACGAAGA
AGACACGTATCGAGAGCTTTGTTTCGATACGGACAAACTACCGGAAGAGT
ATTTAACACGCACGactgttttaaaaacaaatagtAACGAGTCCAGTTCA
ACGTCTCTTGACGAGGTCGATGGTATTACAGCTTCTATAGAACCTTTTTA
TTATGTTTTGGAAGAACAGATGAAGGACGAATTATTGAAAAGGAGAAATT
CTTCTTCAGCGAAGAAAGCGCTACCTGATATTGTGGAGGATAATGAGAGT
GAAGAGATTTTCGTTTGATTTTATGTGCATGGGAGTGGAATGTGCTCAGG
AAAGCATCGGATTAATAGAAAAATACGACGAAAAATGAAGGCAAGTTTTC
GTGATAAATATATCGAGATTTGTGAGAACACTTTACAAAGCCCTGGTGGT
GGTGGTTACACAGTGAAAGGAACTTTACTATCACATTTGAAACTAAACGT
GTGCCCTGTTGTTGAGTGTGGAAAAACGGAACCTGAAAGAGAATCTACAA
AGAAAAAGCCATTGGAAAAACAACGATCTTCTTTACAGCGGAAACAATGT
TTAAGACGCAACACGGACCATCGTAGTCGCGCGGAAAAGGCGCGTAGCAT
TGCAGTTTACGAACGTAAGATCGGTAATACGAGTGATACTGATTTAAGTA
AAACACAACTTGCAACAGACGATGGTTATTTGATTCCGCAAGAAATTCAA
GAGCAGATTTTAAAAGCAAGACAAGCCAGTAGGAATCGAGTGGAGCAACC
CCGTGAGAGTTTCGTAGACGATAATAATAACATACTTGGCACGTTCATTA
ATGTGTCGTATCGTGATAGCAAACGTGGAATTAAGGTAGACACTAAAGGG
CCTGTCCATCCGTACGTCCAAGTCAAGCACCGTACCATACATCGTATGTC
GAGTGACGGACGTGAAGTCGTAGATTCGCAAGACGACTTTAGCGAAGATG
AGGAGAACCCATACTCGACGGCTCGTGAATTGGACGAAGAACTAAGAACT
CTCCCACGATATCACATCATTGATGATGAGCAGTGTAGTGGACTCTGTAT
ACACGACATCATGATTGAGGATTGTACTGAATGTGAGAGTGAGCCCGTGT
ATTCGGAGCCTTCAAGCTGTACTGGAGACGAAGAAGACACGTATCGAGAG
CTTTGTTTCGATACGGACAAACTACCGGAAGAGTATTTAACACGCACGac
tgttttaaaaacaaatagtAACGAGTCCAGTTCAACGTCTCTTGACGAGG
TCGATGGTATTACAGCTTCTATAGAACCTTTTTATTATGTTTTGGAAGAA
CAGATGAAGGACGAATTATTGAAAAGGAGAAATTCTTCTTCAGCGAAGAA
AGCGCTACCTGATATTGTGGAGGATAATGAGAGTGAAGAGATTTTCGTTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015831XLOC_015831Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027976-proteinTCONS_00027976-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027976-exon-sc0000660-1491911889:103203..103251TCONS_00027976-exon-sc0000660-1491911889:103203..103251Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1510915933:103203..103251TCONS_00027976-exon-sc0000660-1510915933:103203..103251Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1575043694:103203..103251TCONS_00027976-exon-sc0000660-1575043694:103203..103251Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1491911889:103586..104285TCONS_00027976-exon-sc0000660-1491911889:103586..104285Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1510915933:103586..104285TCONS_00027976-exon-sc0000660-1510915933:103586..104285Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1575043694:103586..104285TCONS_00027976-exon-sc0000660-1575043694:103586..104285Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1491911889:104352..104757TCONS_00027976-exon-sc0000660-1491911889:104352..104757Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1510915933:104352..104757TCONS_00027976-exon-sc0000660-1510915933:104352..104757Clytia hemisphaericaexon
TCONS_00027976-exon-sc0000660-1575043694:104352..104757TCONS_00027976-exon-sc0000660-1575043694:104352..104757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:103203..104757 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.825064	0.511997	10.5732	14.8309	18.1563	10.5108	11.7165	11.3299	6.3838	31.1206	18.6558	31.7204	41.6282	24.4261	13.2457	7.88436	8.1363	15.2361	23.8401	40.0904	11.3131	11.5669	3.61201	5.2385	8.17384	6.46843	70.605	72.8271	4.20415	3.26554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top