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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027978 ID=TCONS_00027978|Name=TCONS_00027978|organism=Clytia hemisphaerica|type=transcript|length=1736bpRun BLAST on NCBI transcript from alignment at sc0000660:126905..151452+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027978 ID=TCONS_00027978|Name=TCONS_00027978|organism=Clytia hemisphaerica|type=transcript|length=24548bp|location=Sequence derived from alignment at sc0000660:126905..151452+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027978 vs. Swiss-Prot (Human)
Match: CHIN (N-chimaerin OS=Homo sapiens GN=CHN1 PE=1 SV=3) HSP 1 Score: 455.292 bits (1170), Expect = 1.667e-154 Identity = 219/449 (48.78%), Postives = 298/449 (66.37%), Query Frame = 1
Query: 112 PVWKSHLYQVQLKAPKPQRVVCTNHFSNKPFQYGKEYHGPISREEADRLVMQKEGCYLIRESQRQPGSFVLVFNFSNQPRNYKLYFDTEENQHYVGEKRFETTQDLVADGLITLYVDLNAKDYIEHMT------------LNAGPAARP--PDQQDFRTTHEQTLQRNTPTRPVYNTFKASDC---------EKAHNFKTHSYYGPHWCHYCRNFMWGLKAQGVRCQDCSYDCHKQCSTIIPNNCSPDRKLVKRVFGVDLTTLIKAHDQKRPQIVESCVHELEKRGLELEGIYRVPGFADDITYLRNQIDKEGTVPDITEQAFDDINVIAGLVKSYFRTLPIPVITFDLYDQFIAAVKMEDKSDVLKALSTALKSLPPAHYELLKYFCRHLQRVTKYKDRNLMSGENLGIVFGPTLMRAPDHLAMEAVGYIPYQKKIIQSLIEEQDVLF 1389
PVWKS+LYQ+Q +AP P+R+ CT N+P YG+E+HG ISRE AD+L++ EG YLIRESQRQPG++ L F +Q RN++LY+D +H+VGEKRFE+ DLV DGLITLY++ A +YI MT LN PA + P ++ + T Q + + + + + EK HNFK H++ GPHWC YC NFMWGL AQGV+C DC + HKQCS ++PN+C PD K VK+V+ DLTTL+KAH KRP +V+ C+ E+E RGL EG+YRV GF+D I ++ D++G DI+ ++DIN+I G +K YFR LPIP+IT+D Y +FI + K+ D + L+ L ALK LPPAH E L+Y HL+RVT ++ NLM+ ENLGIVFGPTLMR+P+ AM A+ I YQ+ +++ LI+ +D+LF
Sbjct: 14 PVWKSYLYQLQQEAPHPRRITCTCEVENRPKYYGREFHGMISREAADQLLIVAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD---GKHFVGEKRFESIHDLVTDGLITLYIETKAAEYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 459 The following BLAST results are available for this feature:
BLAST of TCONS_00027978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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