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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027980 ID=TCONS_00027980|Name=TCONS_00027980|organism=Clytia hemisphaerica|type=transcript|length=2825bpRun BLAST on NCBI protein sequence of TCONS_00027980-protein >TCONS_00027980-protein ID=TCONS_00027980-protein|Name=TCONS_00027980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp MLLELFKISLLIAMVKTQGNSNLDSLVTIGSLKRTSPKQISCKYTNRNGGRun BLAST on NCBI transcript from alignment at sc0000660:156127..168592+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027980 ID=TCONS_00027980|Name=TCONS_00027980|organism=Clytia hemisphaerica|type=transcript|length=12466bp|location=Sequence derived from alignment at sc0000660:156127..168592+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000660:156127..168592+ >TCONS_00027980 ID=TCONS_00027980|Name=TCONS_00027980|organism=Clytia hemisphaerica|type=CDS|length=13848bp|location=Sequence derived from alignment at sc0000660:156127..168592+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027980 vs. Swiss-Prot (Human)
Match: BMPR2 (Bone morphogenetic protein receptor type-2 OS=Homo sapiens GN=BMPR2 PE=1 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 2.641e-73 Identity = 154/414 (37.20%), Postives = 228/414 (55.07%), Query Frame = 2
Query: 710 NRQYLYCCCRGNNCNKLLVTNPQTQWPETTLEPKSKQEK-TKNSTMFLT-AIISSVTFFLIVFCFAVVYTTHKISKRRRQPNRDNQSLMMRTELLLPSPKTMSDEALDNIMRGNLIHQGTISAVRLATLDGKEVSVKIYQPRSKNQWTNEKEIYEL-LGEHPNVAKFITS-ERIPQDFGFEGIIVMEYYTQGSLLNYLRNNTLSWVQMIRLACCISKGLSFLHRETNKDGSSKVSIAHRDLTSRNVLMKKDGTCVLADFGYALRLKGKYL-------NGKFPLVGSPRYMAPEMLDGSIMQRDWVTAFKQADCYGLALLLWELSRRCRDIIDIDGE-VPECLLPFEEELGSGPSVNKVHGYVCVKQYRPQFPSQWIQNNMALELLKQTITECWDQEADARLTPSCVLNRLKQMI 1915
N Y +CCC + CN N +P P S ++ T+ + A +S + ++ CF T R++ + N MM PS LDN+ LI +G AV +LD + V+VK++ ++ + NEK IY + L EH N+A+FI ER+ D E ++VMEYY GSL YL +T WV RLA +++GL++LH E + K +I+HRDL SRNVL+K DGTCV++DFG ++RL G L N VG+ RYMAPE+L+G++ RD +A KQ D Y L L+ WE+ RC D+ GE VPE + F+ E+G+ P+ + V ++ RP+FP W +N++A+ LK+TI +CWDQ+A+ARLT C R+ +++
Sbjct: 110 NGTYRFCCCSTDLCNVNFTEN----FPPPDTTPLSPPHSFNRDETIIIALASVSVLAVLIVALCFGYRMLT---GDRKQGLHSMN---MMEAAASEPSLD------LDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLCKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDCESALKQVDMYALGLIYWEIFMRCTDL--FPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQCAEERMAELM 505 The following BLAST results are available for this feature:
BLAST of TCONS_00027980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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