TCONS_00027991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027991
Unique NameTCONS_00027991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027991 ID=TCONS_00027991|Name=TCONS_00027991|organism=Clytia hemisphaerica|type=transcript|length=390bp
TAccctggagtttttaattaatttGGAAATGTATAATTCTTTTCCTATAC
CAAATAAGAGAATTagcaaaaaattatgaaataataACTGAACACAATTT
ACAATGACTTTAAGATTAAAATTTAGGGATAAAAATAATTAGACACGAAA
ATTGACACATTGCAATATCACCAATAAGCAGCAGTAAGAGGAGATAACAT
TTCTGATAGCGAATTTTTATAAGCTGTCTCAGAAAACCGATCCCTTGTTG
AACGGGGACGTACCCAAAAAATATACAACTTTGAGTAACTTTCCATTGTC
CTTCATGTTAATGTTTGTTACCAGGGAAACGTCTGTACGGGGAAAAGTCT
GGTCGAGCATTTTCCCGCATTTTCCCGCTTGGGGAAACGT
Run BLAST on NCBI

transcript from alignment at sc0000660:80652..81041

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027991 ID=TCONS_00027991|Name=TCONS_00027991|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0000660:80652..81041 (Clytia hemisphaerica)
ACGTTTCCCCAAGCGGGAAAATGCGGGAAAATGCTCGACCAGACTTTTCC
CCGTACAGACGTTTCCCTGGTAACAAACATTAACATGAAGGACAATGGAA
AGTTACTCAAAGTTGTATATTTTTTGGGTACGTCCCCGTTCAACAAGGGA
TCGGTTTTCTGAGACAGCTTATAAAAATTCGCTATCAGAAATGTTATCTC
CTCTTACTGCTGCTTATTGGTGATATTGCAATGTGTCAATTTTCGTGTCT
AATTATTTTTATCCCTAAATTTTAATCTTAAAGTCATTGTAAATTGTGTT
CAGTtattatttcataattttttgctAATTCTCTTATTTGGTATAGGAAA
AGAATTATACATTTCCaaattaattaaaaactccagggTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015841XLOC_015841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027991-exon-sc0000660-1491911889:80652..81041TCONS_00027991-exon-sc0000660-1491911889:80652..81041Clytia hemisphaericaexon
TCONS_00027991-exon-sc0000660-1510915933:80652..81041TCONS_00027991-exon-sc0000660-1510915933:80652..81041Clytia hemisphaericaexon
TCONS_00027991-exon-sc0000660-1575043694:80652..81041TCONS_00027991-exon-sc0000660-1575043694:80652..81041Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:80652..81041 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19114	0.221932	0	0.79299	0.835508	0	0.943682	0.165174	0.204594	0	0	1.69468	1.89532	0.445203	0.238885	0.882862	1.80981	4.79234	4.7968	0.947566	0.831941	2.47215	1.22593	0.420894	0.375638	0.806304	0.573673	3.04578	2.88151
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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