TCONS_00027993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027993
Unique NameTCONS_00027993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027993 ID=TCONS_00027993|Name=TCONS_00027993|organism=Clytia hemisphaerica|type=transcript|length=474bp
ttcataatttcattccTATAGTTTACATAGGTACCAATAAAAAATTACtg
ctttatttataaacaaaaaataatctgtaAGAGCATATAGACATTAGTGT
ACAGTATGTCTTCACCATTACCAATAAAAACACTCTTATAAAAAGTGTGC
AAACCTGGTCTCGTGTTTCATATCTGGCAGATGTTCCTTCTTCTGCTTCT
TTGCATTTCAAGGTACCGATATCACCTTTTTAGGAAGGGAGATGTCTCTT
TAGAATCCAACCAATCAAACCAAACGTTATGACGTTATAATGTTGAAGAA
GTTGAAGGATGACCAGTCAGTTaaaatttttcagcaaaggaTTGAGAACT
TGAAGCAGTAGCAGTGTCCAGAAGATAAGAGCTTTATATAATTTTGGGGA
ACGGTTTGAAGTTCAGCGGTTGTGTGACATCAGGTTTTTAGCAGGCTGAT
TTGTACGTACAATATAGTCAGANN
Run BLAST on NCBI

transcript from alignment at sc0000660:170838..171311

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027993 ID=TCONS_00027993|Name=TCONS_00027993|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at sc0000660:170838..171311 (Clytia hemisphaerica)
NNTCTGACTATATTGTACGTACAAATCAGCCTGCTAAAAACCTGATGTCA
CACAACCGCTGAACTTCAAACCGTTCCCCAAAATTATATAAAGCTCTTAT
CTTCTGGACACTGCTACTGCTTCAAGTTCTCAAtcctttgctgaaaaatt
ttAACTGACTGGTCATCCTTCAACTTCTTCAACATTATAACGTCATAACG
TTTGGTTTGATTGGTTGGATTCTAAAGAGACATCTCCCTTCCTAAAAAGG
TGATATCGGTACCTTGAAATGCAAAGAAGCAGAAGAAGGAACATCTGCCA
GATATGAAACACGAGACCAGGTTTGCACACTTTTTATAAGAGTGTTTTTA
TTGGTAATGGTGAAGACATACTGTACACTAATGTCTATATGCTCTtacag
attattttttgtttataaataaagcaGTAATTTTTTATTGGTACCTATGT
AAACTATAggaatgaaattatgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015843XLOC_015843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027993-exon-sc0000660-1491911889:170838..171311TCONS_00027993-exon-sc0000660-1491911889:170838..171311Clytia hemisphaericaexon
TCONS_00027993-exon-sc0000660-1510915933:170838..171311TCONS_00027993-exon-sc0000660-1510915933:170838..171311Clytia hemisphaericaexon
TCONS_00027993-exon-sc0000660-1575043694:170838..171311TCONS_00027993-exon-sc0000660-1575043694:170838..171311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000660supercontigsc0000660:170838..171311 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.906022	2.3525	0.836794	0.848956	0.864338	0.970012	0.607137	1.27323	1.62244	2.87217	3.28282	1.36571	2.99761	3.7104	0.168124	0.175594	0	0.331815	1.90216	0.794947	1.77931	1.02716	0.813089	0.481951	1.05112	2.01138	0.813357	1.06597	0.363614	0.364106
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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