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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027998 ID=TCONS_00027998|Name=TCONS_00027998|organism=Clytia hemisphaerica|type=transcript|length=4279bp
AAAGAAGAGCCACCTTCTTGGTAAAAGTCATGGGACCTCCGACTGTGTTA
ATCGACTGTGTTGCCCTTCATACACCTACGAATCCGAATAATCTCATTGG
TTTAAATGCTAGAAATTTTCATCAGCCGATCACTGTCGGTAACAGACAAG
ATATCATCAATAACCATCAACCAGATCTTCGAAAGGATTATCTTCATAAC
TACCCAACTGATACGGCACCATATTTTCACAACAATCCAGACATGAGAAA
TAATTATAGACGTCAAAATAATTACCATGATTTTGAGAACAGTTATTATG
AAGAACACTCACGAGATCGATCTAGAANCAAGAAATTTGAACAAAGAAGA
GCCACCTTCTTGGTAAAAGTCATGGGACCTCCGACTGTGTTAATCGACTG
TGTTGCCCTTCATACACCTACGAATCCGAATAATCTCATTGGTTTAAATG
CTAGAAATTTTCATCAGCCGATCACTGTCGGTAACAGACAAGATATCATC
AATAACCATCAACCAGATCTTCGATACGATGATCTTCTTAACTATCCAAC
TGGTACGGCACCATATTTTCACAACAATCCAGACATGAGAAATAATTATA
GACGTCAAAATAATTACCATGATTTTGAGAACAGTTATTATGAAGAACAC
TCACGAGATCGATCTAGAATTTATATCAGTCGGACACATGGGAAACGATC
ATATAACGAAAGTGACATCCCAGAGACTGTGAGAGATGAACCCATCGTTa
aaaagaagtttattaaatGCCCTTTTTGTGATAAGAAACTAACAGACTTA
CGAAACCATTTGAAAAAGGTGCATCAGTATGAACGTAAGAAAACCAAAAA
CGAAGTAAAGAAAGATGCGATTTTCCAGTGCCATATCTGCCAGGAGAAGC
AGTCAGACTTAACGGGACATTTACAATTGGAGCATGATTATTTACGTCAT
AATGCTAGATTTGAACAAAAGCAACAGGAATGTATACAACACTGTCAAGC
TAAGCATCATGGGCAACATGTTATACTACCGTGTGATCGTTGCGAGATAT
GGCTTTGTGAACCTACCCTTATTCAACATATCAAGAAATCACATCGTATG
ACGATGATAGGAGCTGATATTAAAGACTTGATACAGAAATATTGGGCAGG
TCACAGAATCACAGCCAAAAAACTTGACCAGTATGGAAATGTTGTGGTTA
GACCATCGAAGTTAAAAAGAAAAGCTACGGATCTGCTAAACCAATCGAAA
TTGAAACATAAAACTACGACAAcgacaacaaaaacaaaagagcaAACTAA
ATCTGGTGTTGCTACACGTGGGAAACAGTCAAACGAGGTTAGAAAGACAT
CTGAGAAAGCACAGAAAACTGCAACTGAAACTCTAGCTGTATCACCAGAA
AAATCGCCAGAAGAGATTGCAAAAATGGCAAAGGAGATTGAGGATATGTC
AAATATCAATAAAACACTGTTGAACATCGGTCAGAAGACTGACTCTATAA
ACGAAAGCAGGGAAACGAGTGATTCAGCAGTTGATATTGACATTATTAGC
AAGAATCGTTTAAAACCTGCAACTGTTAAAATTGAAGTTATTGAGATTAT
GAGTAGCGATGAGGATGGTGAGAAGGAGGATAAGGAAACTATCAATACTC
GCAAACGAGCAAATTTAGATATCGATTCTCTTCCTCAAGatgaagaaatt
caaacaaagaaatcaaaaactgaaaaagtaatCGATTCCGTAAATGTGAC
AAATTCATCCGAAAGTTCTAAACGTTTTACTGATTTACAAAAGTCTGCAT
CTAATGAGCAAGATGTAAAACAAATTAACCATGAGCCTACGAAATCGAAC
CAGATAAAAGTTACCGAACCTTTAAAGGACGTTTCAAAATCAGCTGACGA
ACAATCTATAAATGCTTCCACTAcctctacaaaaatacccgTACAGCCTT
CACAAGCatcaaatgtcaaaaacttaACAACTATAAAACTAACATCAGGC
AAAGTCGTACAGCTTGCAAAACGAACTGGAACGGTATTGAAAAAACCTCT
AGAACAACCAACGAACAAAGATTCACATCCTACCAAACCACTAGCTACCA
AAGACAAGAAACCTCCAAATCCACCTAATGCAAGAGTTAAACTATCTACA
TTAGAATTGAAGTCGAATGATTCACACACACTAACAGGGCTTTGTTCACT
CGATTCCATTCCAACTGAACATAGGACAATCCAAAGAACGACTGGAGCAA
AATTTCTCTATCAATGTCCTCATTGCGAAGGTCAATATTTCTCATTAGCG
ACTTATTTGATACACCATTTAGCATTTTATCACTATTACGATACTAAGAT
AGCGACATTTGAAACACTCAAACAGCAACAAGTTTATCGTTGTAATGTAA
ACCATGGTGGGATACACACACCTTTGCCATGTGAGATTTGCAATGTTTGG
TTTTGTAATGTTCGATTTGTTAATCATTATTTAAATGaacataaaatgaa
atattgtcAGATATATGCTTTGATGAATGAATATTTAGAGTATTATTGGG
ATGGTATTGCTGTTGTTGCTAAAGAAATTAAGTTCGGTTCGAAAGAGGTG
AAAGATATACAATGGAATAAGATTGATTATGCAGCTATTGATGAGAGATT
ACAAACTCCAGATTCACCAGAACCGTTAGATACCGACTCTCTAATAActg
aagaagcaaaaaagtctGAACCTCTGAATCAGAAAATATCCACTCCATGT
GAAATCTCGGAAATATCTCAGATAAACGTTCAACAGAAGACCCCCAATCA
AATCGAGGCAAAGACCGTCAAGCCATCACAATGTAACGTTGATATTTTCC
AATCCCCTAAttcatcagaaaaaaatccACAATATTCACCTACTCAGAGC
AAATGTAAACACTTTGTGGAGAATCCAGATTCAGTAGCTTTAGAACTTTC
AAAAGAGAAATCTTTCCAGCCTGCAAGCGAACCAAAAGCCATGGATCCTC
ACCAACCCGTCCAAGAGAAAATCACACTACCAAATAAATATACGGAGTCG
TCTACGCCAAATCCAGTTGATACCAAACTGGTTAAAACCACGCAGCCGTC
CCAAATTGAAGAACCTCCATCCAAAGCAATAGACGCATCACCAAAACCAA
TCCACACGAAAGCTATTCTAACTGCAAGTACAATACCACCGCAGATGAAA
ACTACTCTTAATGCAGTACCACCACAGACGAAAGTAGCTCCAGTTACGAA
ATCATTCCAGACCAAGACAACTCCAGCTGCAAAACCAACTAAAACCAATG
CAACTCCATCTGCAAAACCAACCAAAACCAATGCAACTACATCTGCAAAA
CCAACCATAGCTAATGCAACTCCAGAAGGAAAACCAACAAAGACGAAAGC
AGCTTCGGCTACAAAGCCATCTCAGCCCAAGGCAACTCAAGCTAAAAAGC
CAACGCAGAACACTTCAACTActaaaccaaaccaaacaaaagcAAGCCAG
ACCAAAACTATTCCATCTGCAAAACCAGTCCAGATAAAAGATACTCTAAT
AACAAAACCAACCAAGACGAAAGCTACTCCACCAGAAAAACCATCCATAA
CGAAGGCAACTCCAACTGCTGAAACAACCGAGACGAAAACCTCTCCAGCT
GTAAAACCATCCGTAACGAAGGCAACACCAACTGCTAAGCCAACCGAGAC
GAAAATCTCTCCAGCTGTAAAACCATCCGTAACGAAGGCAACTCCAGCTG
CAAAGCCATCCGTAACGAAGGCCACTCCAGCTGCGAAAACAACCGAGACG
AAAAGCTCTCCAGCTTTAAAACCATCCGTAACGAAGGCAACTCCAGCTGC
GAAACCATCCGTAACGAAGGCAACTCCAACAGCGAAATCAACCGAGACGA
AAACCGCTCCAGCTGTAAAACCATCCGTAACGAAGGCAACTTTAGCTGTA
AAAACATCCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACGAA
GGCCACTCCAGCTGCGAAAACAGCCGAGACGAAAAGCTCTCCAGATTTAA
AACCATCCGTAACGAAGGCAACTCCAGCTGCGAAACCATCCGTAACGAAG
GCAACTCCAACAGCGAAATCAACCGAGACGAAAACCTCTCCAGCTGTAAA
ACCACCCGGAACGAAGGCATCTTTAGCTGTAAAAACATCCGTAACGAAGG
CAACTCCAGCTGCAAAGCCATCCGTAACGAAGACCACTCCAGCTGCAAAA
ACAACCGAAACGAAGGCAACTCCACCTGC Run BLAST on NCBI transcript from alignment at sc0000661:23695..27973+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027998 ID=TCONS_00027998|Name=TCONS_00027998|organism=Clytia hemisphaerica|type=transcript|length=4279bp|location=Sequence derived from alignment at sc0000661:23695..27973+ (Clytia hemisphaerica)
AAAGAAGAGCCACCTTCTTGGTAAAAGTCATGGGACCTCCGACTGTGTTA
ATCGACTGTGTTGCCCTTCATACACCTACGAATCCGAATAATCTCATTGG
TTTAAATGCTAGAAATTTTCATCAGCCGATCACTGTCGGTAACAGACAAG
ATATCATCAATAACCATCAACCAGATCTTCGAAAGGATTATCTTCATAAC
TACCCAACTGATACGGCACCATATTTTCACAACAATCCAGACATGAGAAA
TAATTATAGACGTCAAAATAATTACCATGATTTTGAGAACAGTTATTATG
AAGAACACTCACGAGATCGATCTAGAANCAAGAAATTTGAACAAAGAAGA
GCCACCTTCTTGGTAAAAGTCATGGGACCTCCGACTGTGTTAATCGACTG
TGTTGCCCTTCATACACCTACGAATCCGAATAATCTCATTGGTTTAAATG
CTAGAAATTTTCATCAGCCGATCACTGTCGGTAACAGACAAGATATCATC
AATAACCATCAACCAGATCTTCGATACGATGATCTTCTTAACTATCCAAC
TGGTACGGCACCATATTTTCACAACAATCCAGACATGAGAAATAATTATA
GACGTCAAAATAATTACCATGATTTTGAGAACAGTTATTATGAAGAACAC
TCACGAGATCGATCTAGAATTTATATCAGTCGGACACATGGGAAACGATC
ATATAACGAAAGTGACATCCCAGAGACTGTGAGAGATGAACCCATCGTTa
aaaagaagtttattaaatGCCCTTTTTGTGATAAGAAACTAACAGACTTA
CGAAACCATTTGAAAAAGGTGCATCAGTATGAACGTAAGAAAACCAAAAA
CGAAGTAAAGAAAGATGCGATTTTCCAGTGCCATATCTGCCAGGAGAAGC
AGTCAGACTTAACGGGACATTTACAATTGGAGCATGATTATTTACGTCAT
AATGCTAGATTTGAACAAAAGCAACAGGAATGTATACAACACTGTCAAGC
TAAGCATCATGGGCAACATGTTATACTACCGTGTGATCGTTGCGAGATAT
GGCTTTGTGAACCTACCCTTATTCAACATATCAAGAAATCACATCGTATG
ACGATGATAGGAGCTGATATTAAAGACTTGATACAGAAATATTGGGCAGG
TCACAGAATCACAGCCAAAAAACTTGACCAGTATGGAAATGTTGTGGTTA
GACCATCGAAGTTAAAAAGAAAAGCTACGGATCTGCTAAACCAATCGAAA
TTGAAACATAAAACTACGACAAcgacaacaaaaacaaaagagcaAACTAA
ATCTGGTGTTGCTACACGTGGGAAACAGTCAAACGAGGTTAGAAAGACAT
CTGAGAAAGCACAGAAAACTGCAACTGAAACTCTAGCTGTATCACCAGAA
AAATCGCCAGAAGAGATTGCAAAAATGGCAAAGGAGATTGAGGATATGTC
AAATATCAATAAAACACTGTTGAACATCGGTCAGAAGACTGACTCTATAA
ACGAAAGCAGGGAAACGAGTGATTCAGCAGTTGATATTGACATTATTAGC
AAGAATCGTTTAAAACCTGCAACTGTTAAAATTGAAGTTATTGAGATTAT
GAGTAGCGATGAGGATGGTGAGAAGGAGGATAAGGAAACTATCAATACTC
GCAAACGAGCAAATTTAGATATCGATTCTCTTCCTCAAGatgaagaaatt
caaacaaagaaatcaaaaactgaaaaagtaatCGATTCCGTAAATGTGAC
AAATTCATCCGAAAGTTCTAAACGTTTTACTGATTTACAAAAGTCTGCAT
CTAATGAGCAAGATGTAAAACAAATTAACCATGAGCCTACGAAATCGAAC
CAGATAAAAGTTACCGAACCTTTAAAGGACGTTTCAAAATCAGCTGACGA
ACAATCTATAAATGCTTCCACTAcctctacaaaaatacccgTACAGCCTT
CACAAGCatcaaatgtcaaaaacttaACAACTATAAAACTAACATCAGGC
AAAGTCGTACAGCTTGCAAAACGAACTGGAACGGTATTGAAAAAACCTCT
AGAACAACCAACGAACAAAGATTCACATCCTACCAAACCACTAGCTACCA
AAGACAAGAAACCTCCAAATCCACCTAATGCAAGAGTTAAACTATCTACA
TTAGAATTGAAGTCGAATGATTCACACACACTAACAGGGCTTTGTTCACT
CGATTCCATTCCAACTGAACATAGGACAATCCAAAGAACGACTGGAGCAA
AATTTCTCTATCAATGTCCTCATTGCGAAGGTCAATATTTCTCATTAGCG
ACTTATTTGATACACCATTTAGCATTTTATCACTATTACGATACTAAGAT
AGCGACATTTGAAACACTCAAACAGCAACAAGTTTATCGTTGTAATGTAA
ACCATGGTGGGATACACACACCTTTGCCATGTGAGATTTGCAATGTTTGG
TTTTGTAATGTTCGATTTGTTAATCATTATTTAAATGaacataaaatgaa
atattgtcAGATATATGCTTTGATGAATGAATATTTAGAGTATTATTGGG
ATGGTATTGCTGTTGTTGCTAAAGAAATTAAGTTCGGTTCGAAAGAGGTG
AAAGATATACAATGGAATAAGATTGATTATGCAGCTATTGATGAGAGATT
ACAAACTCCAGATTCACCAGAACCGTTAGATACCGACTCTCTAATAActg
aagaagcaaaaaagtctGAACCTCTGAATCAGAAAATATCCACTCCATGT
GAAATCTCGGAAATATCTCAGATAAACGTTCAACAGAAGACCCCCAATCA
AATCGAGGCAAAGACCGTCAAGCCATCACAATGTAACGTTGATATTTTCC
AATCCCCTAAttcatcagaaaaaaatccACAATATTCACCTACTCAGAGC
AAATGTAAACACTTTGTGGAGAATCCAGATTCAGTAGCTTTAGAACTTTC
AAAAGAGAAATCTTTCCAGCCTGCAAGCGAACCAAAAGCCATGGATCCTC
ACCAACCCGTCCAAGAGAAAATCACACTACCAAATAAATATACGGAGTCG
TCTACGCCAAATCCAGTTGATACCAAACTGGTTAAAACCACGCAGCCGTC
CCAAATTGAAGAACCTCCATCCAAAGCAATAGACGCATCACCAAAACCAA
TCCACACGAAAGCTATTCTAACTGCAAGTACAATACCACCGCAGATGAAA
ACTACTCTTAATGCAGTACCACCACAGACGAAAGTAGCTCCAGTTACGAA
ATCATTCCAGACCAAGACAACTCCAGCTGCAAAACCAACTAAAACCAATG
CAACTCCATCTGCAAAACCAACCAAAACCAATGCAACTACATCTGCAAAA
CCAACCATAGCTAATGCAACTCCAGAAGGAAAACCAACAAAGACGAAAGC
AGCTTCGGCTACAAAGCCATCTCAGCCCAAGGCAACTCAAGCTAAAAAGC
CAACGCAGAACACTTCAACTActaaaccaaaccaaacaaaagcAAGCCAG
ACCAAAACTATTCCATCTGCAAAACCAGTCCAGATAAAAGATACTCTAAT
AACAAAACCAACCAAGACGAAAGCTACTCCACCAGAAAAACCATCCATAA
CGAAGGCAACTCCAACTGCTGAAACAACCGAGACGAAAACCTCTCCAGCT
GTAAAACCATCCGTAACGAAGGCAACACCAACTGCTAAGCCAACCGAGAC
GAAAATCTCTCCAGCTGTAAAACCATCCGTAACGAAGGCAACTCCAGCTG
CAAAGCCATCCGTAACGAAGGCCACTCCAGCTGCGAAAACAACCGAGACG
AAAAGCTCTCCAGCTTTAAAACCATCCGTAACGAAGGCAACTCCAGCTGC
GAAACCATCCGTAACGAAGGCAACTCCAACAGCGAAATCAACCGAGACGA
AAACCGCTCCAGCTGTAAAACCATCCGTAACGAAGGCAACTTTAGCTGTA
AAAACATCCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACGAA
GGCCACTCCAGCTGCGAAAACAGCCGAGACGAAAAGCTCTCCAGATTTAA
AACCATCCGTAACGAAGGCAACTCCAGCTGCGAAACCATCCGTAACGAAG
GCAACTCCAACAGCGAAATCAACCGAGACGAAAACCTCTCCAGCTGTAAA
ACCACCCGGAACGAAGGCATCTTTAGCTGTAAAAACATCCGTAACGAAGG
CAACTCCAGCTGCAAAGCCATCCGTAACGAAGACCACTCCAGCTGCAAAA
ACAACCGAAACGAAGGCAACTCCACCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027998-exon-sc0000661-1491911889:23695..27973 | TCONS_00027998-exon-sc0000661-1491911889:23695..27973 | Clytia hemisphaerica | exon |
| TCONS_00027998-exon-sc0000661-1510915933:23695..27973 | TCONS_00027998-exon-sc0000661-1510915933:23695..27973 | Clytia hemisphaerica | exon |
| TCONS_00027998-exon-sc0000661-1575043694:23695..27973 | TCONS_00027998-exon-sc0000661-1575043694:23695..27973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000661 | supercontig | sc0000661:23695..27973 + |
Blast
The following BLAST results are available for this feature:
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