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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028000 ID=TCONS_00028000|Name=TCONS_00028000|organism=Clytia hemisphaerica|type=transcript|length=1035bp
CAAAAACATCCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACG
AAGGCCACTCCAGCTGCAAAAACAACCGAAACGAAGGCAACTCCACCTGC
AAAACCATCCGTAACGAAGGCCACTCCAGCTGCAAAAACAACCGAAACGA
AGGCAACTCCACCTGCAAAACCATCCGTAACGAAGGCAACTCCAGCTGCA
ATAACAACCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACGAA
GGCCACTCCAGCTGCAAAAACAACCGAAATGAAGGCAACCCCAGCTGCAA
AACCATCCGTAACGAAGGCAACTCTAACAGCGAAACCAACCGAAACAAAA
ACCTCTCCAGCTGCAAAGCCATCCGTAACGAAGACAACTCCAACAGCTAA
ACCATCCGTAACGAAGACTGCTCAAGCTGCAAAAGCAACCAAGACGAAGG
CTTCTCCAGCTGCAAAGCGATCTCAAACGAAGGCTACTCCACCAGCAAAA
CTGACACGAACGATAGCTATACCTTCTCAAACTGAAGCAAAAGACACGCA
ATTTACAAATCTTATCAAATTAGAAGCTGTTGAAGCCAAACAATCAAAGC
TGTCTCAATCGTTTGAGATTAAAGCTGTGTTACATTCTGGTTGTACATCT
GAGAAGGTTAACGCCAACACTCATGAAAATGCTGTCAATAAAGAATATAC
CTCCACGTTGACCCAAACAACCGAAACGAATTTCGTTGAGAATGTTTCTA
TCGCAACACAAGCATCAGATAACGATATTTCAAAGACATCTCCAGTCAAC
ATGTGTACAAACTGTTCAAAACCAAATGAGTTTGGCCAAAGAACCTCATC
AGATCTTGAGGGGTTTGTACATGACGTTGAAAGTATTGCCACAATGACGA
AATTGTTTATCAGGCAAGCACCTGATTTAAAAGATCGATTGACATTGATT
TGTAAGAATGTCTTGGGTGAGCTTTCAAAACCTTTCAAAAGTAGCAGTGA
AGCGCAGAAGAAATAAATCACAACACAATATCTCA Run BLAST on NCBI protein sequence of TCONS_00028000-protein >TCONS_00028000-protein ID=TCONS_00028000-protein|Name=TCONS_00028000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
KTSVTKATPAAKPSVTKATPAAKTTETKATPPAKPSVTKATPAAKTTETK
ATPPAKPSVTKATPAAITTVTKATPAAKPSVTKATPAAKTTEMKATPAAK
PSVTKATLTAKPTETKTSPAAKPSVTKTTPTAKPSVTKTAQAAKATKTKA
SPAAKRSQTKATPPAKLTRTIAIPSQTEAKDTQFTNLIKLEAVEAKQSKL
SQSFEIKAVLHSGCTSEKVNANTHENAVNKEYTSTLTQTTETNFVENVSI
ATQASDNDISKTSPVNMCTNCSKPNEFGQRTSSDLEGFVHDVESIATMTK
LFIRQAPDLKDRLTLICKNVLGELSKPFKSSSEAQKK Run BLAST on NCBI transcript from alignment at sc0000661:28237..29973+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028000 ID=TCONS_00028000|Name=TCONS_00028000|organism=Clytia hemisphaerica|type=transcript|length=1737bp|location=Sequence derived from alignment at sc0000661:28237..29973+ (Clytia hemisphaerica)
CAAAAACATCCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACG
AAGGCCACTCCAGCTGCAAAAACAACCGAAACGAAGGCAACTCCACCTGC
AAAACCATCCGTAACGAAGGCCACTCCAGCTGCAAAAACAACCGAAACGA
AGGCAACTCCACCTGCAAAACCATCCGTAACGAAGGCAACTCCAGCTGCA
ATAACAACCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACGAA
GGCCACTCCAGCTGCAAAAACAACCGAAATGAAGGCAACCCCAGCTGCAA
AACCATCCGTAACGAAGGCAACTCTAACAGCGAAACCAACCGAAACAAAA
ACCTCTCCAGCTGCAAAGCCATCCGTAACGAAGACAACTCCAACAGCTAA
ACCATCCGTAACGAAGACTGCTCAAGCTGCAAAAGCAACCAAGACGAAGG
CTTCTCCAGCTGCAAAGCGATCTCAAACGAAGGCTACTCCACCAGCAAAA
CTGACACGAACGATAGCTATACCTTCTCAAACTGAAGCAAAAGACACGCA
ATTTACAAATCTTATCAAATTAGAAGCTGTTGAAGCCAAACAATCAAAGC
TGTCTCAATCGTTTGAGATTAAAGCTGTGTTACATTCTGGTTGTACATCT
GAGAAGGTTAACGCCAACACTCATGAAAATGCTGTCAATAAAGAATATAC
CTCCACGTTGACCCAAACAACCGAAACGAATTTCGTTGAGAATGTTTCTA
TCGCAACACAAGCATCAGATAACGATATTTCAAAGACATCTCCAGTCAAC
ATGTGTACAAACTGTTCAAAACCAAATGAGTTTGGCCAAAGAACCTCATC
AGATCTTGAGGTAATGATACTTACcctaagtggataaattttggcgggga
ttaaatttggcaaatttggccaaaattcgccaaattaaatcctcgccaaa
atgttaaaaatcagccattcgccaaattaaatccacgccaaattTAACGA
AATTTTTCTAAGTTAGAAATTCTATGGAGAATATGTATTTCTTAGTAAAA
TATACCAATATAGTTTACCAGAGACTAAAACCCTCCcactcgccaaatta
aatcccaaaaatcgcattttggtCATTTGCCACATTAAATctacgccaaa
atttatccacttaaggtatttcATATGCTATCTCTTTTGTAAGAGAAAAC
TGTTATTCCCATGCAATTGAAGATGAAGAGACCCGGGAAGATTTAGTTTT
ACTAGAGACTAGAACTTATTTGAAATATCTTTCTTGCTTTTCGTTTATTA
GCGATGTTTTAATTATATTGAGAAATTTTATCCATAGGAAGTCAGCAGGT
TTAAAACAAGTAGCTaaactttgtattttcaatCTTGTAGGGGTTTGTAC
ATGACGTTGAAAGTATTGCCACAATGACGAAATTGTTTATCAGGTAAGGA
ATtctgttctgtaaaatacacatagAACACATTCTTTTTTCAAGAGTCGA
CACAAGTTGAGACTGACGTTTTGGGTTGTTCTTGAGATTTTTTATAGTCT
AAACAGAAGACTAACTATTCTTCTGAGCCTCGTGTTCAAGAATTTTGCTA
TTTCTACATTTTTAGGCAAGCACCTGATTTAAAAGATCGATTGACATTGA
TTTGTAAGAATGTCTTGGGTGAGCTTTCAAAACCTTTCAAAAGTAGCAGT
GAAGCGCAGAAGAAATAAATCACAACACAATATCTCA Coding sequence (CDS) from alignment at sc0000661:28237..29973+ >TCONS_00028000 ID=TCONS_00028000|Name=TCONS_00028000|organism=Clytia hemisphaerica|type=CDS|length=3042bp|location=Sequence derived from alignment at sc0000661:28237..29973+ (Clytia hemisphaerica)
AAAACATCCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACGAA
GGCCACTCCAGCTGCAAAAACAACCGAAACGAAGGCAACTCCACCTGCAA
AACCATCCGTAACGAAGGCCACTCCAGCTGCAAAAACAACCGAAACGAAG
GCAACTCCACCTGCAAAACCATCCGTAACGAAGGCAACTCCAGCTGCAAT
AACAACCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACGAAGG
CCACTCCAGCTGCAAAAACAACCGAAATGAAGGCAACCCCAGCTGCAAAA
CCATCCGTAACGAAGGCAACTCTAACAGCGAAACCAACCGAAACAAAAAC
CTCTCCAGCTGCAAAGCCATCCGTAACGAAGACAACTCCAACAGCTAAAC
CATCCGTAACGAAGACTGCTCAAGCTGCAAAAGCAACCAAGACGAAGGCT
TCTCCAGCTGCAAAGCGATCTCAAACGAAGGCTACTCCACCAGCAAAACT
GACACGAACGATAGCTATACCTTCTCAAACTGAAGCAAAAGACACGCAAT
TTACAAATCTTATCAAATTAGAAGCTGTTGAAGCCAAACAATCAAAGCTG
TCTCAATCGTTTGAGATTAAAGCTGTGTTACATTCTGGTTGTACATCTGA
GAAGGTTAACGCCAACACTCATGAAAATGCTGTCAATAAAGAATATACCT
CCACGTTGACCCAAACAACCGAAACGAATTTCGTTGAGAATGTTTCTATC
GCAACACAAGCATCAGATAACGATATTTCAAAGACATCTCCAGTCAACAT
GTGTACAAACTGTTCAAAACCAAATGAGTTTGGCCAAAGAACCTCATCAG
ATCTTGAGGGGTTTGTACATGACGTTGAAAGTATTGCCACAATGACGAAA
TTGTTTATCAGGCAAGCACCTGATTTAAAAGATCGATTGACATTGATTTG
TAAGAATGTCTTGGGTGAGCTTTCAAAACCTTTCAAAAGTAGCAGTGAAG
CGCAGAAGAAATAAAAAACATCCGTAACGAAGGCAACTCCAGCTGCAAAG
CCATCCGTAACGAAGGCCACTCCAGCTGCAAAAACAACCGAAACGAAGGC
AACTCCACCTGCAAAACCATCCGTAACGAAGGCCACTCCAGCTGCAAAAA
CAACCGAAACGAAGGCAACTCCACCTGCAAAACCATCCGTAACGAAGGCA
ACTCCAGCTGCAATAACAACCGTAACGAAGGCAACTCCAGCTGCAAAGCC
ATCCGTAACGAAGGCCACTCCAGCTGCAAAAACAACCGAAATGAAGGCAA
CCCCAGCTGCAAAACCATCCGTAACGAAGGCAACTCTAACAGCGAAACCA
ACCGAAACAAAAACCTCTCCAGCTGCAAAGCCATCCGTAACGAAGACAAC
TCCAACAGCTAAACCATCCGTAACGAAGACTGCTCAAGCTGCAAAAGCAA
CCAAGACGAAGGCTTCTCCAGCTGCAAAGCGATCTCAAACGAAGGCTACT
CCACCAGCAAAACTGACACGAACGATAGCTATACCTTCTCAAACTGAAGC
AAAAGACACGCAATTTACAAATCTTATCAAATTAGAAGCTGTTGAAGCCA
AACAATCAAAGCTGTCTCAATCGTTTGAGATTAAAGCTGTGTTACATTCT
GGTTGTACATCTGAGAAGGTTAACGCCAACACTCATGAAAATGCTGTCAA
TAAAGAATATACCTCCACGTTGACCCAAACAACCGAAACGAATTTCGTTG
AGAATGTTTCTATCGCAACACAAGCATCAGATAACGATATTTCAAAGACA
TCTCCAGTCAACATGTGTACAAACTGTTCAAAACCAAATGAGTTTGGCCA
AAGAACCTCATCAGATCTTGAGGGGTTTGTACATGACGTTGAAAGTATTG
CCACAATGACGAAATTGTTTATCAGGCAAGCACCTGATTTAAAAGATCGA
TTGACATTGATTTGTAAGAATGTCTTGGGTGAGCTTTCAAAACCTTTCAA
AAGTAGCAGTGAAGCGCAGAAGAAATAAAAAACATCCGTAACGAAGGCAA
CTCCAGCTGCAAAGCCATCCGTAACGAAGGCCACTCCAGCTGCAAAAACA
ACCGAAACGAAGGCAACTCCACCTGCAAAACCATCCGTAACGAAGGCCAC
TCCAGCTGCAAAAACAACCGAAACGAAGGCAACTCCACCTGCAAAACCAT
CCGTAACGAAGGCAACTCCAGCTGCAATAACAACCGTAACGAAGGCAACT
CCAGCTGCAAAGCCATCCGTAACGAAGGCCACTCCAGCTGCAAAAACAAC
CGAAATGAAGGCAACCCCAGCTGCAAAACCATCCGTAACGAAGGCAACTC
TAACAGCGAAACCAACCGAAACAAAAACCTCTCCAGCTGCAAAGCCATCC
GTAACGAAGACAACTCCAACAGCTAAACCATCCGTAACGAAGACTGCTCA
AGCTGCAAAAGCAACCAAGACGAAGGCTTCTCCAGCTGCAAAGCGATCTC
AAACGAAGGCTACTCCACCAGCAAAACTGACACGAACGATAGCTATACCT
TCTCAAACTGAAGCAAAAGACACGCAATTTACAAATCTTATCAAATTAGA
AGCTGTTGAAGCCAAACAATCAAAGCTGTCTCAATCGTTTGAGATTAAAG
CTGTGTTACATTCTGGTTGTACATCTGAGAAGGTTAACGCCAACACTCAT
GAAAATGCTGTCAATAAAGAATATACCTCCACGTTGACCCAAACAACCGA
AACGAATTTCGTTGAGAATGTTTCTATCGCAACACAAGCATCAGATAACG
ATATTTCAAAGACATCTCCAGTCAACATGTGTACAAACTGTTCAAAACCA
AATGAGTTTGGCCAAAGAACCTCATCAGATCTTGAGGGGTTTGTACATGA
CGTTGAAAGTATTGCCACAATGACGAAATTGTTTATCAGGCAAGCACCTG
ATTTAAAAGATCGATTGACATTGATTTGTAAGAATGTCTTGGGTGAGCTT
TCAAAACCTTTCAAAAGTAGCAGTGAAGCGCAGAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028000-exon-sc0000661-1491911889:28237..29096 | TCONS_00028000-exon-sc0000661-1491911889:28237..29096 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1510915933:28237..29096 | TCONS_00028000-exon-sc0000661-1510915933:28237..29096 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1575043694:28237..29096 | TCONS_00028000-exon-sc0000661-1575043694:28237..29096 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1491911889:29627..29679 | TCONS_00028000-exon-sc0000661-1491911889:29627..29679 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1510915933:29627..29679 | TCONS_00028000-exon-sc0000661-1510915933:29627..29679 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1575043694:29627..29679 | TCONS_00028000-exon-sc0000661-1575043694:29627..29679 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1491911889:29852..29973 | TCONS_00028000-exon-sc0000661-1491911889:29852..29973 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1510915933:29852..29973 | TCONS_00028000-exon-sc0000661-1510915933:29852..29973 | Clytia hemisphaerica | exon |
| TCONS_00028000-exon-sc0000661-1575043694:29852..29973 | TCONS_00028000-exon-sc0000661-1575043694:29852..29973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000661 | supercontig | sc0000661:28237..29973 + |
Blast
The following BLAST results are available for this feature:
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