TCONS_00028013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028013
Unique NameTCONS_00028013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028013 ID=TCONS_00028013|Name=TCONS_00028013|organism=Clytia hemisphaerica|type=transcript|length=329bp
AAACAACACGCGTCCGACATGTTTGTCCCCAAATTCTGAAATTTCCCGTG
ACCCTGTGGAAGGAACAATTCACCAACCAAGTTGTATCGTTCGAACGTCA
ACCAAAGATACCACGCCATCGTCAGCGAATCAGAAGTCCATTAGCAGCTT
TGGTAAACCTTCCAATGCAATGCCCAAATCAAACCATCTGGATTTAGAAG
CGGAGTATAACAGATATGAGTTAGAAATGAATGAAATatgcaaatctaca
tcaaaTGTTTCGAATGATAAGTCAAAAGCTGATGACAAACAAAATGCTAG
AGTAGATATTGATAATGAGTCAATCAAAA
Run BLAST on NCBI

transcript from alignment at sc0000661:72379..72959+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028013 ID=TCONS_00028013|Name=TCONS_00028013|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at sc0000661:72379..72959+ (Clytia hemisphaerica)
AAACAACACGCGTCCGACATGTTTGTCCCCAAGTAAGCAGTCAATCCGTG
AATCGAAAATTTCTGGATACGATAAAGCGAGTACCAAAATGTGGAAACTG
GATGTTAAGACTAAAACAAAATCGCGTTCTCGAAAGACTGAACGAAAAAC
CAAAATCTTAAACGAGTATAACACTGGCTTTGAACCAGTTTTCGATATCT
TAGACTACAAGAGTGTTCTAGATTCTGAAATTTCCCGTGACCCAGTAGAA
GGAACAATTCATCAACCAAGTTATACCGTGTTAGATTCTGAAATTTCCCG
TGACCCTGTGGAAGGAACAATTCACCAACCAAGTTGTATCGTTCGAACGT
CAACCAAAGATACCACGCCATCGTCAGCGAATCAGAAGTCCATTAGCAGC
TTTGGTAAACCTTCCAATGCAATGCCCAAATCAAACCATCTGGATTTAGA
AGCGGAGTATAACAGATATGAGTTAGAAATGAATGAAATatgcaaatcta
catcaaaTGTTTCGAATGATAAGTCAAAAGCTGATGACAAACAAAATGCT
AGAGTAGATATTGATAATGAGTCAATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015854XLOC_015854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028013-exon-sc0000661-1491911889:72379..72410TCONS_00028013-exon-sc0000661-1491911889:72379..72410Clytia hemisphaericaexon
TCONS_00028013-exon-sc0000661-1510915933:72379..72410TCONS_00028013-exon-sc0000661-1510915933:72379..72410Clytia hemisphaericaexon
TCONS_00028013-exon-sc0000661-1575043694:72379..72410TCONS_00028013-exon-sc0000661-1575043694:72379..72410Clytia hemisphaericaexon
TCONS_00028013-exon-sc0000661-1491911889:72663..72959TCONS_00028013-exon-sc0000661-1491911889:72663..72959Clytia hemisphaericaexon
TCONS_00028013-exon-sc0000661-1510915933:72663..72959TCONS_00028013-exon-sc0000661-1510915933:72663..72959Clytia hemisphaericaexon
TCONS_00028013-exon-sc0000661-1575043694:72663..72959TCONS_00028013-exon-sc0000661-1575043694:72663..72959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000661supercontigsc0000661:72379..72959 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.258996	0.9757	1.27857	0	0.144121	0	1.94564	0	0.0607419	0	0	0.0197447	0.378257	0	0	0	0.635599	0	0.471351	0	0	0.601395	0.8895	1.65924	0	0	0.493715	0	0.151788	0.0811969
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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