TCONS_00028016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028016
Unique NameTCONS_00028016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028016 ID=TCONS_00028016|Name=TCONS_00028016|organism=Clytia hemisphaerica|type=transcript|length=629bp
CCAATTGAAAGCTTTCAACCACCAAGCTCTGACTTCAACCGAATAagaat
caaccaatcaatgaGCAAGAGTGCTGAACCAAGAATTACAGCTTTCACAA
CTTTAATTGATGACTCTTTACCGTCTACTCCTGATGAAAATTCATTCCTT
GTTCCGTCAAAAAGTACAACAGAGGATGATACTTCATCAAAAATAGAGAC
AGGATATTCTTCGGAGCCGGCAAAAAGACACACTAAAACTGTTGTTGCAG
AAACCAtaaaaatcaatagaaacacAGAATGCTGCGGTAAAACAATTGGA
TCCGTAATTAAAACAGCCGAATCTCTCAACAAAACCAAATCTGTTTTGAC
TCCTTCGACGATTCTGACGACGTTTTCGTCCAAAGTAAATTCGGGAATGT
CCCTAGCGAAATCAAGAATTGAGCCCATTTCGACTTCAAATGATAACACC
ACCTCTAATAAAGAGAACGTATCACCCCTGAAAAGCTTAGCACAAAAAGG
AAACGAAGACAACAGAAAAGTTGCTaaagaattggaaaaaagaGCAGAAA
CCGAAAATAAAACGGCTTTGATAGAGGGCTTTATGAATGACGTGGAAAAT
ATTGCAACAGTAGCCAAAATGTTCATCAG
Run BLAST on NCBI

protein sequence of TCONS_00028016-protein

>TCONS_00028016-protein ID=TCONS_00028016-protein|Name=TCONS_00028016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
PIESFQPPSSDFNRIRINQSMSKSAEPRITAFTTLIDDSLPSTPDENSFL
VPSKSTTEDDTSSKIETGYSSEPAKRHTKTVVAETIKINRNTECCGKTIG
SVIKTAESLNKTKSVLTPSTILTTFSSKVNSGMSLAKSRIEPISTSNDNT
TSNKENVSPLKSLAQKGNEDNRKVAKELEKRAETENKTALIEGFMNDVEN
IATVAKMFI
Run BLAST on NCBI

transcript from alignment at sc0000661:79097..81668+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028016 ID=TCONS_00028016|Name=TCONS_00028016|organism=Clytia hemisphaerica|type=transcript|length=2572bp|location=Sequence derived from alignment at sc0000661:79097..81668+ (Clytia hemisphaerica)
CCAATTGAAAGCTTTCAACCACCAAGCTCTGACTTCAACCGAATAagaat
caaccaatcaatgaGCAAGAGTGCTGAACCAAGAATTACAGCTTTCACAA
CTTTAATTGATGACTCTTTACCGTCTACTCCTGATGAAAATTCATTCCTT
GTTCCGTCAAAAAGTACAACAGAGGATGATACTTCATCAAAAATAGAGAC
AGGTAAGCGAGCTTAAATTTCTTTTCTGTAACCTCCagctttcatttttc
aatcgaGCCCTTTCTTCACAATTTTCCTAAATATTTTACGTACCCAACCT
cgcaaaaatcgccatttatcAAGTTTATCTGGTGTTCAAATCTTTGCATC
CGGCAACTTATCCCGGGCTGCAAACTAGCAGAGCTACTGCAAATAGTTAT
CATCGGTTTTTCTTGAAACtctttaaaacttatttttatctTCCTTTGTA
TGTTACCTTTCTAGGATATTCTTCGGAGCCGGCAAAAAGACACACTAAAA
CTGTTGTTGCAGAAACCAtaaaaatcaatagaaacacAGAATGCTGCGGT
AAAACAATTGGATCCGTAATTAAAACAGCCGAATCTCTCAACAAAACCAA
ATCTGTTTTGACTCCTTCGACGATTCTGACGACGTTTTCGTCCAAAGTAA
ATTCGGGAATGTCCCTAGCGAAATCAAGAATTGAGGTATATATTTATTTC
TTTATTGGGGAGTCCGGGGAGTCCTATGTATAAACCAAATGTTCAGATTT
GGTTAGAATTTAGTTTTTTATGAAGATATGGGGAATGGATTTGTTTGGTT
TAACAATGGCAGTGAAGACGATGAAGATGGCATAAACATCACCCGGTTAT
TCTCTTATTAGAACTTTAACATTTCGATTGTTTTCGCCATCGTCGCTTAA
ATAAAGAAAACTTTCCACTGAAAACTTTGAGTGGTGAGATTTCTAAGTTG
TCTGTACTTGTAAGTAGTGATTCTTATTGACGATTTCTTTTCCAGCCCAT
TTCGACTTCAAATGATAACACCACCTCTAATAAAGAGAACGTATCACCCT
TGAAAAgcttggcacaaaaaggaaacgAAGACAACAGAAAAGTTGCTAAA
GACCTGGAAAAAAGAACGGAAACCAAAAATAAAACGGCTTTAATAGAGGT
GAGCCAGTTTCTACAATCACGGCCGTAGAGATTAAATAAACATTAACCAG
AAAACCTAAAGACCAAAAACGATTTTAAAGTGTTTTACCTAATTTCGCGA
ATGTCGATGTTTAAGTCTGTAGTTTTAACATTCGGCTTCAAACCTTAAGA
TCTCACGATCCCAAtgttcaaagctgttcaaaaaaAGGCTGGGAATATGG
CCTGGAAGCAAATGAACCcctgaaaaatcgaaatgtccaaTGAAACAAGT
TGAAATGATGACATTGCAAGAGATACCAATACACTTTTCCTCTGATTGTA
GTTGTCCCTCAACAAAAATTGACATGATacaatgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgtttgTCATTTGATTGAGCTT
TCTAAGTTTTTCGCCTTCGTTGCTTAAATAAAGAAGCCCTCGTTCCACTA
ATAACTTTGAGTGATGAGATTTCTAAGTTGTCTGTACTTGTAAGTAGTAA
TTCTTATTGCTGCTTTCTTTTCCAGCCCATTTCGACTTCAAATGATAACA
CCACCTCTAATAAAGAGAACGTATCACCCCTGAAAAGCTTAGCACAAAAA
GGAAACGAAGACAACAGAAAAGTTGCTaaagaattggaaaaaagaGCAGA
AACCGAAAATAAAACGGCTTTGATAGAGGTGAGCGATGTACAGTCTTTGG
CCAGTTTCTACAATCATGGCCGTAATTTTTGAAGTCTAAAGAAGAATTCA
CCGGAAAACCTAAATAAGTTTTAAGATTCTGCTTAAGTAGACCGTAGTGC
CGAGGTGGAGCGTTCGGCTACGGAGCGTAAGGTGAGCTAACCCCCTGTCG
GCTCATATCAAAGACCTGTTACAGAAGTACCTTCTATCGAATAAGTATCA
TTGAAGTCACCTTCGACTGCGATCGCAGACTTACCTACTTACTAGGATCT
CTTGTCCAGTGAAATAAAGTTGAAATCCCATTCTCTCTCCTGAacttatt
ttagaaaaaaacactgAAATAGCCAGAGATACCAATACATattgaccttg
attgtagttcTCCCTCAACAAAAATTGACATGACAAGAAGCTTAAATAAC
CGTTGTTCTCTTAAACAATGGAACAACCGTTGTTCTCTTAAACAATCGAC
ATTGCTACGCCCCCTACCGTTTTAAAAAAGAGTTGTTTATCCAGTGTTTT
CCTTAAACTTGTATCGCGTTGGTTTTGGCACTCTTGAAAGGGTGGATATA
ACgaatcaaattaataattaATATTATTGATTGATCGATCgatttcaatt
tatttattcCCTATTACAGGGCTTTATGAATGACGTGGAAAATATTGCAA
CAGTAGCCAAAATGTTCATCAG

Coding sequence (CDS) from alignment at sc0000661:79097..81668+

>TCONS_00028016 ID=TCONS_00028016|Name=TCONS_00028016|organism=Clytia hemisphaerica|type=CDS|length=2508bp|location=Sequence derived from alignment at sc0000661:79097..81668+ (Clytia hemisphaerica)
CCAATTGAAAGCTTTCAACCACCAAGCTCTGACTTCAACCGAATAagaat
caaccaatcaatgaGCAAGAGTGCTGAACCAAGAATTACAGCTTTCACAA
CTTTAATTGATGACTCTTTACCGTCTACTCCTGATGAAAATTCATTCCTT
GTTCCGTCAAAAAGTACAACAGAGGATGATACTTCATCAAAAATAGAGAC
AGGATATTCTTCGGAGCCGGCAAAAAGACACACTAAAACTGTTGTTGCAG
AAACCAtaaaaatcaatagaaacacAGAATGCTGCGGTAAAACAATTGGA
TCCGTAATTAAAACAGCCGAATCTCTCAACAAAACCAAATCTGTTTTGAC
TCCTTCGACGATTCTGACGACGTTTTCGTCCAAAGTAAATTCGGGAATGT
CCCTAGCGAAATCAAGAATTGAGCCCATTTCGACTTCAAATGATAACACC
ACCTCTAATAAAGAGAACGTATCACCCCTGAAAAGCTTAGCACAAAAAGG
AAACGAAGACAACAGAAAAGTTGCTaaagaattggaaaaaagaGCAGAAA
CCGAAAATAAAACGGCTTTGATAGAGGGCTTTATGAATGACGTGGAAAAT
ATTGCAACAGTAGCCAAAATGTTCATCCCAATTGAAAGCTTTCAACCACC
AAGCTCTGACTTCAACCGAATAagaatcaaccaatcaatgaGCAAGAGTG
CTGAACCAAGAATTACAGCTTTCACAACTTTAATTGATGACTCTTTACCG
TCTACTCCTGATGAAAATTCATTCCTTGTTCCGTCAAAAAGTACAACAGA
GGATGATACTTCATCAAAAATAGAGACAGGATATTCTTCGGAGCCGGCAA
AAAGACACACTAAAACTGTTGTTGCAGAAACCAtaaaaatcaatagaaac
acAGAATGCTGCGGTAAAACAATTGGATCCGTAATTAAAACAGCCGAATC
TCTCAACAAAACCAAATCTGTTTTGACTCCTTCGACGATTCTGACGACGT
TTTCGTCCAAAGTAAATTCGGGAATGTCCCTAGCGAAATCAAGAATTGAG
CCCATTTCGACTTCAAATGATAACACCACCTCTAATAAAGAGAACGTATC
ACCCCTGAAAAGCTTAGCACAAAAAGGAAACGAAGACAACAGAAAAGTTG
CTaaagaattggaaaaaagaGCAGAAACCGAAAATAAAACGGCTTTGATA
GAGGGCTTTATGAATGACGTGGAAAATATTGCAACAGTAGCCAAAATGTT
CATCCCAATTGAAAGCTTTCAACCACCAAGCTCTGACTTCAACCGAATAa
gaatcaaccaatcaatgaGCAAGAGTGCTGAACCAAGAATTACAGCTTTC
ACAACTTTAATTGATGACTCTTTACCGTCTACTCCTGATGAAAATTCATT
CCTTGTTCCGTCAAAAAGTACAACAGAGGATGATACTTCATCAAAAATAG
AGACAGGATATTCTTCGGAGCCGGCAAAAAGACACACTAAAACTGTTGTT
GCAGAAACCAtaaaaatcaatagaaacacAGAATGCTGCGGTAAAACAAT
TGGATCCGTAATTAAAACAGCCGAATCTCTCAACAAAACCAAATCTGTTT
TGACTCCTTCGACGATTCTGACGACGTTTTCGTCCAAAGTAAATTCGGGA
ATGTCCCTAGCGAAATCAAGAATTGAGCCCATTTCGACTTCAAATGATAA
CACCACCTCTAATAAAGAGAACGTATCACCCCTGAAAAGCTTAGCACAAA
AAGGAAACGAAGACAACAGAAAAGTTGCTaaagaattggaaaaaagaGCA
GAAACCGAAAATAAAACGGCTTTGATAGAGGGCTTTATGAATGACGTGGA
AAATATTGCAACAGTAGCCAAAATGTTCATCCCAATTGAAAGCTTTCAAC
CACCAAGCTCTGACTTCAACCGAATAagaatcaaccaatcaatgaGCAAG
AGTGCTGAACCAAGAATTACAGCTTTCACAACTTTAATTGATGACTCTTT
ACCGTCTACTCCTGATGAAAATTCATTCCTTGTTCCGTCAAAAAGTACAA
CAGAGGATGATACTTCATCAAAAATAGAGACAGGATATTCTTCGGAGCCG
GCAAAAAGACACACTAAAACTGTTGTTGCAGAAACCAtaaaaatcaatag
aaacacAGAATGCTGCGGTAAAACAATTGGATCCGTAATTAAAACAGCCG
AATCTCTCAACAAAACCAAATCTGTTTTGACTCCTTCGACGATTCTGACG
ACGTTTTCGTCCAAAGTAAATTCGGGAATGTCCCTAGCGAAATCAAGAAT
TGAGCCCATTTCGACTTCAAATGATAACACCACCTCTAATAAAGAGAACG
TATCACCCCTGAAAAGCTTAGCACAAAAAGGAAACGAAGACAACAGAAAA
GTTGCTaaagaattggaaaaaagaGCAGAAACCGAAAATAAAACGGCTTT
GATAGAGGGCTTTATGAATGACGTGGAAAATATTGCAACAGTAGCCAAAA
TGTTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015855XLOC_015855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028016-exon-sc0000661-1491911889:79097..79298TCONS_00028016-exon-sc0000661-1491911889:79097..79298Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1510915933:79097..79298TCONS_00028016-exon-sc0000661-1510915933:79097..79298Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1575043694:79097..79298TCONS_00028016-exon-sc0000661-1575043694:79097..79298Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1491911889:79561..79781TCONS_00028016-exon-sc0000661-1491911889:79561..79781Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1510915933:79561..79781TCONS_00028016-exon-sc0000661-1510915933:79561..79781Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1575043694:79561..79781TCONS_00028016-exon-sc0000661-1575043694:79561..79781Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1491911889:80822..80974TCONS_00028016-exon-sc0000661-1491911889:80822..80974Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1510915933:80822..80974TCONS_00028016-exon-sc0000661-1510915933:80822..80974Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1575043694:80822..80974TCONS_00028016-exon-sc0000661-1575043694:80822..80974Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1491911889:81616..81668TCONS_00028016-exon-sc0000661-1491911889:81616..81668Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1510915933:81616..81668TCONS_00028016-exon-sc0000661-1510915933:81616..81668Clytia hemisphaericaexon
TCONS_00028016-exon-sc0000661-1575043694:81616..81668TCONS_00028016-exon-sc0000661-1575043694:81616..81668Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028016-proteinTCONS_00028016-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000661supercontigsc0000661:79097..81668 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.57507	3.13015	1.43463	0.935709	3.98698	2.34042	2.82361	2.54176	0.983435	2.55694	3.33763	1.55447	0.465693	0.161209	0.81541	1.5957	2.79012	3.50974	0.0897943	0	1.47008	1.43411	3.77725	2.37743	5.71363	4.61363	3.8219	2.04937	5.06282	5.44479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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