TCONS_00028068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028068
Unique NameTCONS_00028068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028068 ID=TCONS_00028068|Name=TCONS_00028068|organism=Clytia hemisphaerica|type=transcript|length=1744bp
GTAAAAAATCGTCTGAATTAGAAGACTGGttaaaacattgaatttttaGA
TAAAACTTCTCTAGAACATAACTATTAAGTTACCGAAAAACAGTCTCCAA
TACCAGAGATGGAAGTTCCATTATACAGGAATATGGAGTTAGCGGGATTT
AAAATAGTGTTGTCCTTATTGACAGCATTTTGGATTCAACAACCATGTTA
CGGGGTGAATATAGCAAGTCTCGAAAACATTAATATGACAGAATATGAAA
AAGTGACGCTACCATACCTACACGACAACAACAAGACGGTTGAAGTTAAC
GTATCAATGTATATTTTGAATATTGGAAATATGAATACACGAGAAATGAC
ATTTGAAGTTGAGATGTATTTCAGCATGAATTGGACAGACCCGAGGCttg
cttttgaagaatatcATAATGCATCTTATGCACTTGTGACAGGTGAAATT
GCATATGAGAATATTTGGGTACCCGATCTCTTCATTCGAAACATGAAGTT
CGTTGAAAGCAGTAAATTCCTGAAAGATCTGTCCGGAGTGATGATCTACC
CTGATGGAGTCATTACTTTATCAAGTCGTTTGAGAGTTGTTGCACACTGT
GAAATGGATCTATTGATGTTTCCATTGGATTCTCAGAGCTGTAACTTGAT
GATAGAATCGTACCTCTATCATACCGATGTCATGAAAACTTATTGGGCCG
AAGACCCAATAGTGGTGGACAAGAGAAGAGACGGAAGAAAAACAGAAATC
GATACTTGGATGGGTTTCACTCTAGAAGAAACTAAAACCGCGTACAACAG
ATACATATATCCACTTAATGGGCTTGAATTTCATTACATGATTgcaactt
ttgttttgaaacggGAGCCACAATACTACATTCTAAGGGGTTTTATACCA
AGCTCCTTACTTGTCTGTCTGACTTGGGCAAGCTTTTGGATACCAACAAC
AAGCTATCCAGCTAGAATTGGTATCGTGGTAACATCATTCTTGGCATCTA
TCGTCCTTTACACTGGATCAACGCTGGATTCTCATCAGATGACAGTGAtg
caaatgtttttatttggaaACATCGCATTTATTGGTTTAACTTTGATCGA
ATTTCTGATGGCAATTAGGTCAGACAAGAAACGGAAGATGAAGCAGAAAG
TGATAATTGCGATTGACTTGATAAAGGAAGACAACCAGACGATCGAAAAA
GCAGACTCAAAAACATCCGATGTTGGAAAAGAGAAGGAAAATTTAGTGGA
CAAACGAGCTCGTTATATCATTCCATTTGTTTATTTGCTTTATCTGGCAA
TATTTGTTGCTGTAATCATGTTTCATTGATGCTTAAGAAAGGCAGTGTAG
CTCAGGTCAAGTCAAGTCTGCAACCGTAGTCGGAAACGACCTGAAGGCTC
CTCAATTTCGGTAGCTATCTACGCGaagggagggcgccactctctCTCta
tggatttctccacttacccttgatccttctcttttaTTACTAAGCATtta
gcagagaggcatcaagtaccattttgggatcTTTGATGAGACCAAGCCAG
AGATTGAAACCACGACCTTGCACACCGTTGCCGAACAAGTTAAACAAATT
TCAGCTTCATGAAAACTAGCACATTTGCAAAAAGGGGATGTCACACGTTT
TCCTGGTGGTCTAAAAGCAGGGAAATCAATAGCATTCATGGTTCAATACC
TTGCGGTAGACTTAAGTATTTAACCAACTTTAGTTATGTTATGC
Run BLAST on NCBI

protein sequence of TCONS_00028068-protein

>TCONS_00028068-protein ID=TCONS_00028068-protein|Name=TCONS_00028068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MEVPLYRNMELAGFKIVLSLLTAFWIQQPCYGVNIASLENINMTEYEKVT
LPYLHDNNKTVEVNVSMYILNIGNMNTREMTFEVEMYFSMNWTDPRLAFE
EYHNASYALVTGEIAYENIWVPDLFIRNMKFVESSKFLKDLSGVMIYPDG
VITLSSRLRVVAHCEMDLLMFPLDSQSCNLMIESYLYHTDVMKTYWAEDP
IVVDKRRDGRKTEIDTWMGFTLEETKTAYNRYIYPLNGLEFHYMIATFVL
KREPQYYILRGFIPSSLLVCLTWASFWIPTTSYPARIGIVVTSFLASIVL
YTGSTLDSHQMTVMQMFLFGNIAFIGLTLIEFLMAIRSDKKRKMKQKVII
AIDLIKEDNQTIEKADSKTSDVGKEKENLVDKRARYIIPFVYLLYLAIFV
AVIMFH
Run BLAST on NCBI

transcript from alignment at sc0000662:86347..89217+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028068 ID=TCONS_00028068|Name=TCONS_00028068|organism=Clytia hemisphaerica|type=transcript|length=2871bp|location=Sequence derived from alignment at sc0000662:86347..89217+ (Clytia hemisphaerica)
GTAAAAAATCGTCTGAATTAGAAGACTGGttaaaacattgaatttttaGA
TAAAACTTCTCTAGAACATAACTATTAAGTTACCGAAAAACAGTCTCCAA
TACCAGAGATGGAAGTTCCATTATACAGGAATATGGAGTTAGCGGGATTT
AAAATAGTGTTGTCCTTATTGACAGCATTTTGGATTCAACAACCATGTTA
CGGGGTGAATATAGCAAGTCTCGAAAACATTAATATGACAGAATATGAAA
AAGTGACGCTACCATACCTACACGACAACAACAAGACGGTTGAAGTTAAC
GTATCAATGTATATTTTGAATATTGGAAATATGAATACACGAGAAATGAC
ATTTGAAGTTGAGATGTATTTCAGCATGAATTGGACAGACCCGAGGCttg
cttttgaagaatatcATAATGCATCTTATGCACTTGTGACAGGTACTTCT
ATTCTACTTTTTTAATTATATAGGTACCTGtcagggaaaacttcgtcggg
gaaaagtgacgaaattttggcaagtgacgaatatttttcccgacgataat
tttccccggccttaatgcgtttaccaactactaACAAGTGGCGAATATTT
TCCCCggcgaagttttccccgataaagtaACTAATCTTGGCAGGAATTAA
TTATGGCAAAACAAGTTCTCcccaaaataaaagaataatttaTGGCTCCA
CTGAAATtaaattacacccctgtctcacagccccggcggaacttttttcc
tcagtggggataaaaattcctattgagatcctaatggggataaaaacttc
tattgaaatcccaatgggatagaaattctattgttcttaggttaaaaaat
ccagtggggatggttttggatgcaatttttaaacatggaatttggAGAGG
GGATGATATCAAAATCAATCTCCCAGTGGTGCTGAAATTCAAAGGTTTTc
ccgacgaaatttttgcttaattttccgGTGGGGCTGGAGGGGTCCaaacg
ggtctgtgacacaggggtgttaaattTCTTCGTATTTTTCCAAAATAGCA
CATAAATATAGTTCAAAGCtcattttctggcaaaaaaaaaaacaacacaa
gTAATTCACCATGCCATTTAACAAAATTAATTCTcactaaaattaaaaat
tagcgCTATTTGCCAAAGTTACTTCTCGAGTCTAGAGTTATTTCGAAAGC
CTATTTCCTAATTCTATATCAACTATCCTACAATAATCGTGGCACGTGTG
CTAAAATGTGCGTGTACTAACAGTTTGTGAGAGATCAAGTGAGCCCAACG
GAAAATACTTAGGATGCAGCATCAGACTCATTGAGTCCTCAAAATTTTTT
AGGTGAAATTGCATATGAGAATATTTGGGTACCCGATCTCTTCATTCGAA
ACATGAAGTTCGTTGAAAGCAGTAAATTCCTGAAAGATCTGTCCGGAGTG
ATGATCTACCCTGATGGAGTCATTACTTTATCAAGTCGTTTGAGAGTTGT
TGCACACTGTGAAATGGATCTATTGATGTTTCCATTGGATTCTCAGAGCT
GTAACTTGATGATAGAATCGTACCTCTATCATACCGATGTCATGAAAACT
TATTGGGCCGAAGACCCAATAGTGGTGGACAAGAGAAGAGACGGAAGAAA
AACAGAAATCGATACTTGGATGGGTTTCACTCTAGAAGAAACTAAAACCG
CGTACAACAGATACATATATCCACTTAATGGGCTTGAATTTCATTACATG
ATTgcaacttttgttttgaaacggGAGCCACAATACTACATTCTAAGGGG
TTTTATACCAAGCTCCTTACTTGTCTGTCTGACTTGGGCAAGCTTTTGGA
TACCAACAACAAGCTATCCAGCTAGAATTGGTATCGTGGTAACATCATTC
TTGGCATCTATCGTCCTTTACACTGGATCAACGCTGGATTCTCATCAGAT
GACAGTGAtgcaaatgtttttatttggaaACATCGCATTTATTGGTTTAA
CTTTGATCGAATTTCTGATGGCAATTAGGTCAGACAAGAAACGGAAGATG
AAGCAGAAAGTGAGTGTTCAATAATAATTTTCTAGAGCGCTGTGATAAAA
TGATGATTGACTAAgcaaatattttatcaataaGATCTATTTACCTCAAT
ATGCTATAGATTCACCTGGTTGATTCATTATTATTTATCGAAAAATGCAT
CGTAAAAGGAGAAGAAATGGGGTAAACAAAACTAAAGCTAATTGTCGTCA
TAAACTATCTGTTTTATTAATTTTAGGTGATAATTGCGATTGACTTGATA
AAGGAAGACAACCAGACGATCGAAAAAGCAGACTCAAAAACATCCGATGT
TGGAAAAGAGAAGGAAAATTTAGTGGACAAACGAGCTCGTTATATCATTC
CATTTGTTTATTTGCTTTATCTGGCAATATTTGTTGCTGTAATCATGTTT
CATTGATGCTTAAGAAAGGCAGTGTAGCTCAGGTCAAGTCAAGTCTGCAA
CCGTAGTCGGAAACGACCTGAAGGCTCCTCAATTTCGGTAGCTATCTACG
CGaagggagggcgccactctctCTCtatggatttctccacttacccttga
tccttctcttttaTTACTAAGCATttagcagagaggcatcaagtaccatt
ttgggatcTTTGATGAGACCAAGCCAGAGATTGAAACCACGACCTTGCAC
ACCGTTGCCGAACAAGTTAAACAAATTTCAGCTTCATGAAAACTAGCACA
TTTGCAAAAAGGGGATGTCACACGTTTTCCTGGTGGTCTAAAAGCAGGGA
AATCAATAGCATTCATGGTTCAATACCTTGCGGTAGACTTAAGTATTTAA
CCAACTTTAGTTATGTTATGC

Coding sequence (CDS) from alignment at sc0000662:86347..89217+

>TCONS_00028068 ID=TCONS_00028068|Name=TCONS_00028068|organism=Clytia hemisphaerica|type=CDS|length=3663bp|location=Sequence derived from alignment at sc0000662:86347..89217+ (Clytia hemisphaerica)
ATGGAAGTTCCATTATACAGGAATATGGAGTTAGCGGGATTTAAAATAGT
GTTGTCCTTATTGACAGCATTTTGGATTCAACAACCATGTTACGGGGTGA
ATATAGCAAGTCTCGAAAACATTAATATGACAGAATATGAAAAAGTGACG
CTACCATACCTACACGACAACAACAAGACGGTTGAAGTTAACGTATCAAT
GTATATTTTGAATATTGGAAATATGAATACACGAGAAATGACATTTGAAG
TTGAGATGTATTTCAGCATGAATTGGACAGACCCGAGGCttgcttttgaa
gaatatcATAATGCATCTTATGCACTTGTGACAGGTGAAATTGCATATGA
GAATATTTGGGTACCCGATCTCTTCATTCGAAACATGAAGTTCGTTGAAA
GCAGTAAATTCCTGAAAGATCTGTCCGGAGTGATGATCTACCCTGATGGA
GTCATTACTTTATCAAGTCGTTTGAGAGTTGTTGCACACTGTGAAATGGA
TCTATTGATGTTTCCATTGGATTCTCAGAGCTGTAACTTGATGATAGAAT
CGTACCTCTATCATACCGATGTCATGAAAACTTATTGGGCCGAAGACCCA
ATAGTGGTGGACAAGAGAAGAGACGGAAGAAAAACAGAAATCGATACTTG
GATGGGTTTCACTCTAGAAGAAACTAAAACCGCGTACAACAGATACATAT
ATCCACTTAATGGGCTTGAATTTCATTACATGATTgcaacttttgttttg
aaacggGAGCCACAATACTACATTCTAAGGGGTTTTATACCAAGCTCCTT
ACTTGTCTGTCTGACTTGGGCAAGCTTTTGGATACCAACAACAAGCTATC
CAGCTAGAATTGGTATCGTGGTAACATCATTCTTGGCATCTATCGTCCTT
TACACTGGATCAACGCTGGATTCTCATCAGATGACAGTGAtgcaaatgtt
tttatttggaaACATCGCATTTATTGGTTTAACTTTGATCGAATTTCTGA
TGGCAATTAGGTCAGACAAGAAACGGAAGATGAAGCAGAAAGTGATAATT
GCGATTGACTTGATAAAGGAAGACAACCAGACGATCGAAAAAGCAGACTC
AAAAACATCCGATGTTGGAAAAGAGAAGGAAAATTTAGTGGACAAACGAG
CTCGTTATATCATTCCATTTGTTTATTTGCTTTATCTGGCAATATTTGTT
GCTGTAATCATGTTTCATTGAATGGAAGTTCCATTATACAGGAATATGGA
GTTAGCGGGATTTAAAATAGTGTTGTCCTTATTGACAGCATTTTGGATTC
AACAACCATGTTACGGGGTGAATATAGCAAGTCTCGAAAACATTAATATG
ACAGAATATGAAAAAGTGACGCTACCATACCTACACGACAACAACAAGAC
GGTTGAAGTTAACGTATCAATGTATATTTTGAATATTGGAAATATGAATA
CACGAGAAATGACATTTGAAGTTGAGATGTATTTCAGCATGAATTGGACA
GACCCGAGGCttgcttttgaagaatatcATAATGCATCTTATGCACTTGT
GACAGGTGAAATTGCATATGAGAATATTTGGGTACCCGATCTCTTCATTC
GAAACATGAAGTTCGTTGAAAGCAGTAAATTCCTGAAAGATCTGTCCGGA
GTGATGATCTACCCTGATGGAGTCATTACTTTATCAAGTCGTTTGAGAGT
TGTTGCACACTGTGAAATGGATCTATTGATGTTTCCATTGGATTCTCAGA
GCTGTAACTTGATGATAGAATCGTACCTCTATCATACCGATGTCATGAAA
ACTTATTGGGCCGAAGACCCAATAGTGGTGGACAAGAGAAGAGACGGAAG
AAAAACAGAAATCGATACTTGGATGGGTTTCACTCTAGAAGAAACTAAAA
CCGCGTACAACAGATACATATATCCACTTAATGGGCTTGAATTTCATTAC
ATGATTgcaacttttgttttgaaacggGAGCCACAATACTACATTCTAAG
GGGTTTTATACCAAGCTCCTTACTTGTCTGTCTGACTTGGGCAAGCTTTT
GGATACCAACAACAAGCTATCCAGCTAGAATTGGTATCGTGGTAACATCA
TTCTTGGCATCTATCGTCCTTTACACTGGATCAACGCTGGATTCTCATCA
GATGACAGTGAtgcaaatgtttttatttggaaACATCGCATTTATTGGTT
TAACTTTGATCGAATTTCTGATGGCAATTAGGTCAGACAAGAAACGGAAG
ATGAAGCAGAAAGTGATAATTGCGATTGACTTGATAAAGGAAGACAACCA
GACGATCGAAAAAGCAGACTCAAAAACATCCGATGTTGGAAAAGAGAAGG
AAAATTTAGTGGACAAACGAGCTCGTTATATCATTCCATTTGTTTATTTG
CTTTATCTGGCAATATTTGTTGCTGTAATCATGTTTCATTGAATGGAAGT
TCCATTATACAGGAATATGGAGTTAGCGGGATTTAAAATAGTGTTGTCCT
TATTGACAGCATTTTGGATTCAACAACCATGTTACGGGGTGAATATAGCA
AGTCTCGAAAACATTAATATGACAGAATATGAAAAAGTGACGCTACCATA
CCTACACGACAACAACAAGACGGTTGAAGTTAACGTATCAATGTATATTT
TGAATATTGGAAATATGAATACACGAGAAATGACATTTGAAGTTGAGATG
TATTTCAGCATGAATTGGACAGACCCGAGGCttgcttttgaagaatatcA
TAATGCATCTTATGCACTTGTGACAGGTGAAATTGCATATGAGAATATTT
GGGTACCCGATCTCTTCATTCGAAACATGAAGTTCGTTGAAAGCAGTAAA
TTCCTGAAAGATCTGTCCGGAGTGATGATCTACCCTGATGGAGTCATTAC
TTTATCAAGTCGTTTGAGAGTTGTTGCACACTGTGAAATGGATCTATTGA
TGTTTCCATTGGATTCTCAGAGCTGTAACTTGATGATAGAATCGTACCTC
TATCATACCGATGTCATGAAAACTTATTGGGCCGAAGACCCAATAGTGGT
GGACAAGAGAAGAGACGGAAGAAAAACAGAAATCGATACTTGGATGGGTT
TCACTCTAGAAGAAACTAAAACCGCGTACAACAGATACATATATCCACTT
AATGGGCTTGAATTTCATTACATGATTgcaacttttgttttgaaacggGA
GCCACAATACTACATTCTAAGGGGTTTTATACCAAGCTCCTTACTTGTCT
GTCTGACTTGGGCAAGCTTTTGGATACCAACAACAAGCTATCCAGCTAGA
ATTGGTATCGTGGTAACATCATTCTTGGCATCTATCGTCCTTTACACTGG
ATCAACGCTGGATTCTCATCAGATGACAGTGAtgcaaatgtttttatttg
gaaACATCGCATTTATTGGTTTAACTTTGATCGAATTTCTGATGGCAATT
AGGTCAGACAAGAAACGGAAGATGAAGCAGAAAGTGATAATTGCGATTGA
CTTGATAAAGGAAGACAACCAGACGATCGAAAAAGCAGACTCAAAAACAT
CCGATGTTGGAAAAGAGAAGGAAAATTTAGTGGACAAACGAGCTCGTTAT
ATCATTCCATTTGTTTATTTGCTTTATCTGGCAATATTTGTTGCTGTAAT
CATGTTTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015882XLOC_015882Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028068-proteinTCONS_00028068-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028068-exon-sc0000662-1491911889:86347..86788TCONS_00028068-exon-sc0000662-1491911889:86347..86788Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1510915933:86347..86788TCONS_00028068-exon-sc0000662-1510915933:86347..86788Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1575043694:86347..86788TCONS_00028068-exon-sc0000662-1575043694:86347..86788Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1491911889:87699..88405TCONS_00028068-exon-sc0000662-1491911889:87699..88405Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1510915933:87699..88405TCONS_00028068-exon-sc0000662-1510915933:87699..88405Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1575043694:87699..88405TCONS_00028068-exon-sc0000662-1575043694:87699..88405Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1491911889:88623..89217TCONS_00028068-exon-sc0000662-1491911889:88623..89217Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1510915933:88623..89217TCONS_00028068-exon-sc0000662-1510915933:88623..89217Clytia hemisphaericaexon
TCONS_00028068-exon-sc0000662-1575043694:88623..89217TCONS_00028068-exon-sc0000662-1575043694:88623..89217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000662supercontigsc0000662:86347..89217 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.104006	0.123961	0.117761	0.0256025	0	0.0123149	0	0.0139093	0	0.0241248	0	0	0.0461143	0.0239451	0.00656203	0.0140841	0.330274	0.151161	0.296426	0.102839	1.83241	1.50418	1.35418	3.64033	0.545928	0.863722	0.303525	0.0507336	0.0256531	0.0392047
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006028GABAA/Glycine_rcpt
IPR006201Neur_channel
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
[Close]
BLAST of TCONS_00028068 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 4.545e-32
Identity = 89/306 (29.08%), Postives = 159/306 (51.96%), Query Frame = 1 
Query:  277 NNKTVEVNVSMYILNIGNMNTREMTFEVEMYFSMNWTDPRLAFEEYHNASYALVTGEIAYENIWVPDLFIRNMKFVESSK-FLKDLS--GVM--IYPDGVITLSSRLRVVAHCEMDLLMFPLDSQSCNLMIESYLYHTDVMKTYWAEDPIVVDKRRDGRKT-EIDTWMGFTLEETKTAYNRYIYPLNGLEFHYMIATFVLKREPQYYILRGFIPSSLLVCLTWASFWIPTTSYPARIGIVVTSFLASIVLYTGSTLDSHQMTVMQ---MFLFGNIAFIGLTLIE-----FLMAIRSDKKRKMKQKV 1152
                + V V + + ++ +++  +M F + +Y    W D RL+F   +N S     G +  + IWVPD+F     FV S + F+ D +   VM  + PDG +  S R+ V A C MD   FPLD+Q+C+L IESY Y  D +  YW        K  D  KT E  +   F ++E  T      Y   G  ++ +   F L+R   +++L+ + P++L+V L+W SFWI   + PAR+ + +T+ L    + TG      +++ ++   ++L+ +  F+ L+++E     +L  ++  K++K+++K+
Sbjct:   93 GGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLSMTF-DGRLV-KKIWVPDMF-----FVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWK-------KGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGW-YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKEQKLREKL 383
The following BLAST results are available for this feature:
BLAST of TCONS_00028068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRR14.545e-3229.08Gamma-aminobutyric acid receptor subunit rho-1 OS=... [more]
back to top