TCONS_00028079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028079
Unique NameTCONS_00028079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028079 ID=TCONS_00028079|Name=TCONS_00028079|organism=Clytia hemisphaerica|type=transcript|length=3498bp
CAGattgaaaaccggttttcaatGATTTATTTCACCGTTTGCTGTCAACA
TGTGGAGGGCTGTGAAGATTGCCTTATTTTGGAAACCCCCTTAAAACCCC
CGGAGAAACCAacagtttttagttttttgatgAATACTGCTAGAGCTGCT
TCAAATTCACTTACTTTGGAGATAGAGAATCCTGGTACCAAGAAAGAAAA
GCTTTTTAACGAGGTATTGAAAATGCTTAAAGAGCGCTCTTGCAGGTTCC
CCAATAaacattttgatgttttgaaaagCTTCTTAAATAAGCTAACTGAT
GCCTTATGGTACATCGATGGTCATAAAGCAACCATTGAAAGAGAATCGAT
TAGAAAAATTccggaatttttcaaaacatttgaaggCTATAATAAGCCTG
AGCTTTCCAAACATCGAAAACGAACTATTGACAATCTTTCCTCTAAGAGG
CTCTTGCAACTTTCTCATTCCCTGAAAGATGCCATGCATTGTATGAAGTT
CATCGATGATTCAAGGGATTGGTCAGCTGCGAAACTAGATATTTTGATTC
TCGCTGAAACTTTACAAAGTTATGCATCCTACCTCGACACCAAAAATGTA
GCAGTAAAACGTATTCACCTGACACCAAGATCAGAGGTTGAAAAGCAATC
AAATGTGACCGTGCTGCCTATTTgtagaaaagaaaatctttactACAAAT
TAGTCAAAGCAGACATTGAACTCGAGAAAGTAGATGTTTATGAGCCAATC
ACATTAAGAGAAAATTTGCAGGCAGGCATGAGTAGAAAGcggttttttta
tattttggatGGTCAGCTTTTACAAAAAGGCCTAACTTCGAAAGCTGTCC
ATTATGCTCATAATCTTGGCGGTCCAAAACCGGCTTTACATTTTTTATGG
AAGATTCCAAACAAGTTTTCGGACACGGAACTTCTTAAGAAAAACTTAGA
AGTCATAACGGACATCCGTAAAAATATTCCAATTTACGAGAGACGTATAA
CCAAAAGAGAATTTAAGAATTCTTTTGGCTTTGCCGCACCATCCCATGTC
TTAAGGTCAATTTTCAAGAACTTGAAGAATGATCAATCACTATCCAACAA
CATGAATGAAACAGAAATCGACCGGAGGCTTGACTTTTCACTAATGGCTG
GTGATGAAGGAATTCTCGTAGATTTACGAGAACAAAACTCTGGGCCTAAG
GATAAGAGATTTGAGACTTTCTTCAAAGAGACTGAAAAATACCTTAAAGA
GGAAGTAGGTGTCACTGTTCATGAAAGGAGGCATACACAACAACTTTACG
TGGCGAAAGCAGTCAGTTTTAGAGATTTGCGTGACCGAGTCAAAGAACGA
GTTCCCGCGAACACTCCCATTCCCTCTGTAAAATGGTTGCGCTAtcagtt
tcaaccaatcaaccCAACTACTAACACTGCCAAGTATTACAAGGGGagat
tgaaaatcaaaatgatggTCCAAAAAAGAcaggttattttttttttccat
cgTTGTACTACTGTATGACTatgaatacacccctgtctcacagacccTAT
GAGACCccacccactggaaaaaaaacaagaattcgtccccggtggagCAA
ACCCCCTCAAATTTCTTCTTCgttggaaaaaatgaaatattactATTCCC
ACTGTGAAATTAAATCTGAAAGAAGCGCACTTTTGCAAATCTTTAGTAAA
ATACCAACAATTTTTAGGTAAGGGTTCATCATGTCGATGCACATTACTGT
GCCGCATCGTGGCGTTACATGCGTGAATATGCGATCAAGCATCGCGACAT
TGTCCATCTCGTCAGCTTAGACGACAAACATAAAATCAAATGTGGCGAGC
CTTCTTACCCTGTTGCTGCTGTAGAGCGTGGCAAGAAAGTGATAGTCGGA
GAAGAACAGGTCATGCCAGTCGGCGACCATGACTTTACAAAATTTGGTAT
CATACCGTCGGTGTCGTTAGTGGTAATGTTAGATATTATAACTATTatga
aaactcaaaatattcTTTGCCTTGCTCGCAAAACTACAAATTTTGTCAAG
AAAAGTCTCTGTCATAAGAGCTCCTTTTAAAAGCAATATTGCATTTAAGC
TTAATCATAAAAATCGATATCTACTTTcaatatttgaaataaatattcaa
tatttttcgatCTTAGATTGACATCCCAGATGATATCGATGGTAGCTTTT
ATCGTGGCCAAGTTCATATCGGTTTTAAAGACTCTGTCTTACAGGCATCG
TCAGCGCTGCGTCATAGCGCAGAATTGAAAAACGTTCTTGCTGCAAATCA
TCCTGACAAACCGGTTCTGCTAATGTATAGCGATGGTGGTCCGGATCATC
GTTTAACGTATAACTCCGTCAAGCTTGCTCTAATTTCTTTATTCATTGAA
CTCGATCTTGACCTACTGATTGCCCTCCGAACTGCCCCCAGTAATTCTTG
GGCGAATCCCGTGGAACGTATTATGTCAATCATCAACATCGGCCTACAAG
GAATTGGAGTCATGCGGACTAAAGTTGGGGATGAGTTTGAAAAAGCAGTC
GGCAAAGCGAAAACTTTGAAAGAAATCAGAGAAGTAGTAGCAGCAGGGAA
CTTCAATGATGAATTGACGAGAACTTTACAAGATCCAATGGTTTTGTTAC
AAAACCAGATGAAACGGTTAAATTTGAAAACTAACGCATTCAAAACCTTT
TCACCAGCAGCAAGCGATGAGATCGACAAGCTATGGGCGAATTGTTTACA
AGTTGATGACGGAATAAACAGGGATGATACTACGAAAAAGGGTATGAAAG
AAAATGCCGCGTACCATCAATTCATCAAGAAACATTGCAAGGCAACCCAC
TATGCTTTCCAAATAAAGAAGTGCCAAGATGGTGATTGTGGAATCTGCAA
aCCGTACAGAGATCAGAAATGCATCGGTCTACCCTTTCTACCTGACCCTG
AGCTGAAGCCTGGTGAAGAGCACTACAAGCCATTAAGTGAGATGTATGGA
AAGGTCACCACCGATAACCGTCCTTCGTTGAAAGCCAGACcaccaaacaa
aagaaagaagatcGGGTTTTCACCATCTCAGCAACACGCGAAAAATACGG
ACATGATGATGCAATGTGATGAGTGTAACAAGTGGCGGctaattttctcc
aaaaagaaACTCACCAAGAAACACAAAGATTCGCTCAACGAAATTCTTGC
TAATATCGCCTACACATGTGGATTTATGTTTGATGACGTCAATCTTCCAA
ACGGTATCACTGTTTTCGTCAAGGATCATGATTGTGCAGATCCGATCGAA
CGCTTATATTATTCGTGTGGATACGAACCTATTTGTATCCAATGTGGATG
GTACCTTCGAGATGCGGACGAAGATGACGTAGCGTATCCGCAGTGCGTTG
ACTGTACAGAAGAGCCCATCAAAAAGCGATGAAGCATCAttgattttact
atttttactattatgtgttttttttctttacttcaaCTTTGTATTTTT
Run BLAST on NCBI

transcript from alignment at sc0000662:131882..136442+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028079 ID=TCONS_00028079|Name=TCONS_00028079|organism=Clytia hemisphaerica|type=transcript|length=4561bp|location=Sequence derived from alignment at sc0000662:131882..136442+ (Clytia hemisphaerica)
CAGattgaaaaccggttttcaatGATTTATTTCACCGTTTGCTGTCAACA
TGTGGAGGGCTGTGAAGATTGCCTTATTTTGGAAACCCCCTTAAAACCCC
CGGAGAAACCAacagtttttagttttttgatgAATACTGCTAGAGCTGCT
TCAAATTCACTTACTTTGGAGATAGAGAATCCTGGTACCAAGAAAGAAAA
GCTTTTTAACGAGGTATTGAAAATGCTTAAAGAGCGCTCTTGCAGGTTCC
CCAATAaacattttgatgttttgaaaagCTTCTTAAATAAGCTAACTGAT
GCCTTATGGTACATCGATGGTCATAAAGCAACCATTGAAAGAGAATCGAT
TAGAAAAATTccggaatttttcaaaacatttgaaggCTATAATAAGCCTG
AGCTTTCCAAACATCGAAAACGAACTATTGACAATCTTTCCTCTAAGAGG
CTCTTGCAACTTTCTCATTCCCTGAAAGATGCCATGCATTGTATGAAGTT
CATCGATGATTCAAGGGATTGGTCAGCTGCGAAACTAGATATTTTGATTC
TCGCTGAAACTTTACAAAGTTATGCATCCTACCTCGACACCAAAAATGTA
GCAGTAAAACGTATTCACCTGACACCAAGATCAGAGGTTGAAAAGCAATC
AAATGTGACCGTGCTGCCTATTTgtagaaaagaaaatctttactACAAAT
TAGTCAAAGCAGACATTGAACTCGAGAAAGTAGATGTTTATGAGCCAATC
ACATTAAGAGAAAATTTGCAGGCAGGCATGAGTAGAAAGcggttttttta
tattttggatGGTCAGCTTTTACAAAAAGGCCTAACTTCGAAAGCTGTCC
ATTATGCTCATAATCTTGGCGGTCCAAAACCGGCTTTACATTTTTTATGG
AAGATTCCAAACAAGTTTTCGGACACGGAACTTCTTAAGAAAAACTTAGA
AGTCATAACGGACATCCGTAAAAATATTCCAATTTACGAGAGACGTATAA
CCAAAAGAGAATTTAAGAATTCTTTTGGCTTTGCCGCACCATCCCATGTC
TTAAGGTCAATTTTCAAGAACTTGAAGAATGATCAATCACTATCCAACAA
CATGAATGAAACAGAAATCGACCGGAGGCTTGACTTTTCACTAATGGCTG
GTGATGAAGGAATTCTCGTAGATTTACGAGAACAAAACTCTGGGCCTAAG
GATAAGAGATTTGAGACTTTCTTCAAAGAGACTGAAAAATACCTTAAAGA
GGAAGTAGGTGTCACTGTTCATGAAAGGAGGCATACACAACAACTTTACG
TGGCGAAAGCAGTCAGTTTTAGAGATTTGCGTGACCGAGTCAAAGAACGA
GTTCCCGCGAACACTCCCATTCCCTCTGTAAAATGGTTGCGCTAtcagtt
tcaaccaatcaaccCAACTACTAACACTGCCAAGTATTACAAGGGGagat
tgaaaatcaaaatgatggTCCAAAAAAGAcaggttattttttttttccat
cgTTGTACTACTGTATGACTatgaatacacccctgtctcacagacccTAT
GAGACCccacccactggaaaaaaaacaagaattcgtccccggtggagCAA
ACCCCCTCAAATTTCTTCTTCgttggaaaaaatgaaatattactATTCCC
ACTGTGAAATTAAATCTGAAAGAAGCGCACTTTTGCAAATCTTTAGTAAA
ATACCAACAATTTTTAGGTAAGGGTTCATCATGTCGATGCACATTACTGT
GCCGCATCGTGGCGTTACATGCGTGAATATGCGATCAAGCATCGCGACAT
TGTCCATCTCGTCAGCTTAGACGACAAACATAAAATCAAATGTGGCGAGC
CTTCTTACCCTGTTGCTGCTGTAGAGCGTGGCAAGAAAGTGATAGTCGGA
GAAGAACAGGTCATGCCAGTCGGCGACCATGACTTTACAAAATTTGGTAT
CATACCGTCGGTGTCGTTAGTGGTAATGTTAGATATTATAACTATTatga
aaactcaaaatattcTTTGCCTTGCTCGCAAAACTACAAATTTTGTCAAG
AAAAGTCTCTGTCATAAGAGCTCCTTTTAAAAGCAATATTGCATTTAAGC
TTAATCATAAAAATCGATATCTACTTTcaatatttgaaataaatattcaa
tatttttcgatCTTAGATTGACATCCCAGATGATATCGATGGTAGCTTTT
ATCGTGGCCAAGTTCATATCGGTTTTAAAGACTCTGTCTTACAGGCATCG
TCAGCGCTGCGTCATAGCGCAGAATTGAAAAACGTTCTTGCTGCAAATCA
TCGTAATTTCAAATTAAGCTATTCAATTTAATatacaaaaaaagttttat
tgaaattttctagGATAAGGAACTGGTTAACATCTTAAATAAGCGTATTG
AAAAAAGTAACGAGGCTTGGAAAATTGAACacccaaaataaaaaataatt
ttctattcTCTTTTAGCTGACAAACCGGTTCTGCTAATGTATAGCGATGG
TGGTCCGGATCATCGTTTAACGTATAACTCCGTCAAGCTTGCTCTAATTT
CTTTATTCATTGAACTCGATCTTGACCTACTGATTGCCCTCCGAACTGCC
CCCAGTAATTCTTGGGCGAATCCCGTGGAACGTATTATGTCAATCATCAA
CATCGGCCTACAAGGAATTGGAGTCATGCGGACTAAAGTTGGGGATGAGT
TTGAAAAAGCAGTCGGTAAAAATATTGTTATTACCTCTGTCAAAAGATTT
CCAAAGATTGATACCTCGTTTTATCAGCAACTtatcttaagggaacttat
tttggcgggaacttattttgcgagtgatgatttttttaaatttctgttAA
ATAACACAAATTCATAAGTTGTTTGAAGTCGGTTTCGGTTGTAGTGTAAA
CCGTTTTTGCTACTAAAATCCTGACTTTTATTGTTTAGGCAAAGCGAAAA
CTTTGAAAGAAATCAGAGAAGTAGTAGCAGCAGGGAACTTCAATGATGAA
TTGACGAGAACTTTACAAGATCCAATGGTTTTGTTACAAAACCAGATGAA
ACGGTTAAATTTGAAAACTAACGCATTCAAAACCTTTTCACCAGCAGCAA
GCGATGAGATCGACAAGCTATGGGCGAATTGTTTACAAGTTGATGACGGA
ATAAACGTAtcataaatcttttttcttctgaaaaaacTTATCTTATTTCT
TTTAAACCTGTTGTGCCTTTCTAAAACAGGATCTTTTTTAATCGCCAAAC
TCTTAAACAATGTCTTATTTAAGAAGGCCtttaaaacgcaatatttttgA
ATCGCCAGTCAAACTTTGAAGCACTATTGAGTATATTTTGATGTGCTAAT
ATATGTAATTATATAAATTTTTCAATAGAGGGATGATACTACGAAAAAGG
GTATGAAAGAAAATGCCGCGTACCATCAATTCATCAAGAAACATTGCAAG
GCAACCCACTATGCTTTCCAAATAAAGAAGTGCCAAGATGGTGATTGTGG
AATCTGCAAGTAGGTTTAGTTTTTAAAGAATAAACctcaataaaattcaa
aaaaattataattctgACCAAGCGCACAGCCAGTAGACAAATATCGAATG
TTTCCAAATGTTTCCAAATTATTGAATGTTTCCAGTTGTGAGTctatcac
tttcatttttcagaCCGTACAGAGATCAGAAATGCATCGGTCTACCCTTT
CTACCTGACCCTGAGCTGAAGCCTGGTGAAGAGCACTACAAGCCATTAAG
TGAGATGTATGGAAAGGTCACCACCGATGTAAGTTGTACTTATGAACATA
GAAATGTTTTATATACAGTATCATAACTTCTTAAAAAGAggttttatttt
gatgaaatatttGGGGACTAATCGTCGGAGCTTCATATATCTAGCTTTTG
TTCATCATTACGATCATATTCTCATTCTCGTATTCTCATTAAATATACAG
AACCGTCCTTCGTTGAAAGCCAGACcaccaaacaaaagaaagaagatcGG
GTTTTCACCATCTCAGCAACACGCGAAAAATACGGACATGATGATGCAAT
GTGATGAGTGTAACAAGTGGCGGctaattttctccaaaaagaaACTCACC
AAGAAACACAAAGATTCGCTCAACGAAATTCTTGCTAATATCGCCTACAC
ATGTGGATTTATGTTTGGTAAGTCTTTTGACATAGCAAAACCCTGAAAAC
CTATAGTTTTGCAAGCTGTTTACTACTCGTAATGAAAATTCATCTCTCTT
TTTGTGTATATTGTATTGAGAACAAAATTTCCATTCCTTCTTCAGATGAC
GTCAATCTTCCAAACGGTATCACTGTTTTCGTCAAGGATCATGATTGTGC
AGATCCGATCGAACGCTTATATTATTCGTGTGGATACGAACCTATTTGTA
TCCAATGTGGATGGTACCTTCGAGATGCGGACGAAGATGACGTAGCGTAT
CCGCAGTGCGTTGACTGTACAGAAGAGCCCATCAAAAAGCGATGAAGCAT
CAttgattttactatttttactattatgtgttttttttctttacttcaaC
TTTGTATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015885XLOC_015885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028079-exon-sc0000662-1491911889:131882..134183TCONS_00028079-exon-sc0000662-1491911889:131882..134183Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1510915933:131882..134183TCONS_00028079-exon-sc0000662-1510915933:131882..134183Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1575043694:131882..134183TCONS_00028079-exon-sc0000662-1575043694:131882..134183Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1491911889:134348..134596TCONS_00028079-exon-sc0000662-1491911889:134348..134596Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1510915933:134348..134596TCONS_00028079-exon-sc0000662-1510915933:134348..134596Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1575043694:134348..134596TCONS_00028079-exon-sc0000662-1575043694:134348..134596Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1491911889:134820..135037TCONS_00028079-exon-sc0000662-1491911889:134820..135037Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1510915933:134820..135037TCONS_00028079-exon-sc0000662-1510915933:134820..135037Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1575043694:134820..135037TCONS_00028079-exon-sc0000662-1575043694:134820..135037Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1491911889:135260..135390TCONS_00028079-exon-sc0000662-1491911889:135260..135390Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1510915933:135260..135390TCONS_00028079-exon-sc0000662-1510915933:135260..135390Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1575043694:135260..135390TCONS_00028079-exon-sc0000662-1575043694:135260..135390Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1491911889:135545..135659TCONS_00028079-exon-sc0000662-1491911889:135545..135659Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1510915933:135545..135659TCONS_00028079-exon-sc0000662-1510915933:135545..135659Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1575043694:135545..135659TCONS_00028079-exon-sc0000662-1575043694:135545..135659Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1491911889:135832..136048TCONS_00028079-exon-sc0000662-1491911889:135832..136048Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1510915933:135832..136048TCONS_00028079-exon-sc0000662-1510915933:135832..136048Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1575043694:135832..136048TCONS_00028079-exon-sc0000662-1575043694:135832..136048Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1491911889:136177..136442TCONS_00028079-exon-sc0000662-1491911889:136177..136442Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1510915933:136177..136442TCONS_00028079-exon-sc0000662-1510915933:136177..136442Clytia hemisphaericaexon
TCONS_00028079-exon-sc0000662-1575043694:136177..136442TCONS_00028079-exon-sc0000662-1575043694:136177..136442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000662supercontigsc0000662:131882..136442 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.247292	0.126444	0.191702	0.0773572	0.199309	0	0	0.244254	0	0	0	0	0	0	0	0	0	0	0	0	2.23983	2.3011	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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