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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028089 ID=TCONS_00028089|Name=TCONS_00028089|organism=Clytia hemisphaerica|type=transcript|length=1378bp
agagaGTTTACGATGTTTTGACTACAAAGTGTCGAAtaagaattggaatg
aattTTTTAATGGAGGTGGAATGTTTTTGCAGAATAAGCCTCATGAATAG
ATATACTGGCTTTTAAGATGTTTTAATTCTACTTTCGTCTttcacaaata
tctttgttcATCATCTCCATAAGATCATCAATCGATTCAAATGTTTTCGT
TTTCACATTACGGATACAATCTTTCGGAACTGAAGACGCCCATCTGTAAT
GGGTGATGTTTGGTGATGAAAAAACTTCGCGTGCTCTATCGCTTGGTATG
AAGAACCAATCTCGAATACTTAAAGAAACGATTTCACCTTCTTTTTGCCA
AAGATTTATTTCTTCTCTATTGCTCAAATAAGTGAGCATTAAACTAGGGG
ATAACTTCTCAGTAAACTGCCTTAAATTATATAAAAGTCTGTAAAGTTTA
TATTTAGTAAAGTGTATCTTGATCCCCAAcggttttgtcttttttatttc
acGCAAAGCGTTCACTTTTTTCAATAAGGCAACAAAATACGGAAAATAAA
GATCATCAGGGAACGTCATGTAGATATTGATCCTAGTAATTTCCTTCATG
CATGTTTCATTAAACATGTCATCTCTTGAAAGAAGGTATCGGTGCATGTA
TTCATATCGGTCGAAATCTGGTTCTTTTATCACATCAAGTAGATTTTTTA
AGATCGTGTTACTCTTCTCAGGTAAAAATGTCCGAGATGAAAAGGAGAGC
CGATGGGCAGGTAACCAGTTTGGAAAATCATTAAGATAGTCACTGGGAAA
AAATAGATTCCATAACCGATCATTTTTGGTATAGCCTATTTCATTCCTCA
CATATGAATAGACCAACGCTTGTTGATAGTCACAGTGAAAAATGATATTC
CATAACCGAtcattttgaagcctttgcatTAAGGAAAACGTTTCTTCTAT
GTCCTTGCGTGGTTGAACCGCATCTAAATAGACCAACGTTTGTTTGACAG
TTTTATTTCCTATGACTTTTTCGTTATAAAGACGtttcaagaaattttcc
aaatcgTTCTGAGGAATATTCATCGTATACCCATTgaaattcctttcaaa
atgaTTGATATTGAAGTTTGGTCGCCATTGAATAACGAAACCATCACTCG
GAAGGTATACATTGACATTGAAGCAATCTTCGTTTCGTGTTAAGCGCTCC
AAACGGAGCAAGAGCTCGTCTAGGAATGACTGATTTATCCAGTCTACAAT
AATAGTAACATTTTGTTTATGTGGACAAGCCAACATTCCGAAATCTTGAA
TCTGAAATCCATCAATTTTAGCAGTGAAGAGAAAAGAAATTACCAAAAAG
GAGATACGGACCATTTTGTAAATACTCG Run BLAST on NCBI protein sequence of TCONS_00028089-protein >TCONS_00028089-protein ID=TCONS_00028089-protein|Name=TCONS_00028089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
SIYKMVRISFLVISFLFTAKIDGFQIQDFGMLACPHKQNVTIIVDWINQS
FLDELLLRLERLTRNEDCFNVNVYLPSDGFVIQWRPNFNINHFERNFNGY
TMNIPQNDLENFLKRLYNEKVIGNKTVKQTLVYLDAVQPRKDIEETFSLM
QRLQNDRLWNIIFHCDYQQALVYSYVRNEIGYTKNDRLWNLFFPSDYLND
FPNWLPAHRLSFSSRTFLPEKSNTILKNLLDVIKEPDFDRYEYMHRYLLS
RDDMFNETCMKEITRINIYMTFPDDLYFPYFVALLKKVNALREIKKTKPL
GIKIHFTKYKLYRLLYNLRQFTEKLSPSLMLTYLSNREEINLWQKEGEIV
SLSIRDWFFIPSDRAREVFSSPNITHYRWASSVPKDCIRNVKTKTFESID
DLMEMMNKDICERRK Run BLAST on NCBI transcript from alignment at sc0000662:79184..80561 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028089 ID=TCONS_00028089|Name=TCONS_00028089|organism=Clytia hemisphaerica|type=transcript|length=1378bp|location=Sequence derived from alignment at sc0000662:79184..80561 (Clytia hemisphaerica)
CGAGTATTTACAAAATGGTCCGTATCTCCTTTTTGGTAATTTCTTTTCTC
TTCACTGCTAAAATTGATGGATTTCAGATTCAAGATTTCGGAATGTTGGC
TTGTCCACATAAACAAAATGTTACTATTATTGTAGACTGGATAAATCAGT
CATTCCTAGACGAGCTCTTGCTCCGTTTGGAGCGCTTAACACGAAACGAA
GATTGCTTCAATGTCAATGTATACCTTCCGAGTGATGGTTTCGTTATTCA
ATGGCGACCAAACTTCAATATCAAtcattttgaaaggaatttcAATGGGT
ATACGATGAATATTCCTCAGAAcgatttggaaaatttcttgaaaCGTCTT
TATAACGAAAAAGTCATAGGAAATAAAACTGTCAAACAAACGTTGGTCTA
TTTAGATGCGGTTCAACCACGCAAGGACATAGAAGAAACGTTTTCCTTAa
tgcaaaggcttcaaaatgaTCGGTTATGGAATATCATTTTTCACTGTGAC
TATCAACAAGCGTTGGTCTATTCATATGTGAGGAATGAAATAGGCTATAC
CAAAAATGATCGGTTATGGAATCTATTTTTTCCCAGTGACTATCTTAATG
ATTTTCCAAACTGGTTACCTGCCCATCGGCTCTCCTTTTCATCTCGGACA
TTTTTACCTGAGAAGAGTAACACGATCTTAAAAAATCTACTTGATGTGAT
AAAAGAACCAGATTTCGACCGATATGAATACATGCACCGATACCTTCTTT
CAAGAGATGACATGTTTAATGAAACATGCATGAAGGAAATTACTAGGATC
AATATCTACATGACGTTCCCTGATGATCTTTATTTTCCGTATTTTGTTGC
CTTATTGAAAAAAGTGAACGCTTTGCgtgaaataaaaaagacaaaaccgT
TGGGGATCAAGATACACTTTACTAAATATAAACTTTACAGACTTTTATAT
AATTTAAGGCAGTTTACTGAGAAGTTATCCCCTAGTTTAATGCTCACTTA
TTTGAGCAATAGAGAAGAAATAAATCTTTGGCAAAAAGAAGGTGAAATCG
TTTCTTTAAGTATTCGAGATTGGTTCTTCATACCAAGCGATAGAGCACGC
GAAGTTTTTTCATCACCAAACATCACCCATTACAGATGGGCGTCTTCAGT
TCCGAAAGATTGTATCCGTAATGTGAAAACGAAAACATTTGAATCGATTG
ATGATCTTATGGAGATGATgaacaaagatatttgtgaaAGACGAAAGTAG
AATTAAAACATCTTAAAAGCCAGTATATCTATTCATGAGGCTTATTCTGC
AAAAACATTCCACCTCCATTAAAAaattcattccaattcttaTTCGACAC
TTTGTAGTCAAAACATCGTAAACtctct Coding sequence (CDS) from alignment at sc0000662:79184..80561 >TCONS_00028089 ID=TCONS_00028089|Name=TCONS_00028089|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000662:79184..80561 (Clytia hemisphaerica)
AGTATTTACAAAATGGTCCGTATCTCCTTTTTGGTAATTTCTTTTCTCTT
CACTGCTAAAATTGATGGATTTCAGATTCAAGATTTCGGAATGTTGGCTT
GTCCACATAAACAAAATGTTACTATTATTGTAGACTGGATAAATCAGTCA
TTCCTAGACGAGCTCTTGCTCCGTTTGGAGCGCTTAACACGAAACGAAGA
TTGCTTCAATGTCAATGTATACCTTCCGAGTGATGGTTTCGTTATTCAAT
GGCGACCAAACTTCAATATCAAtcattttgaaaggaatttcAATGGGTAT
ACGATGAATATTCCTCAGAAcgatttggaaaatttcttgaaaCGTCTTTA
TAACGAAAAAGTCATAGGAAATAAAACTGTCAAACAAACGTTGGTCTATT
TAGATGCGGTTCAACCACGCAAGGACATAGAAGAAACGTTTTCCTTAatg
caaaggcttcaaaatgaTCGGTTATGGAATATCATTTTTCACTGTGACTA
TCAACAAGCGTTGGTCTATTCATATGTGAGGAATGAAATAGGCTATACCA
AAAATGATCGGTTATGGAATCTATTTTTTCCCAGTGACTATCTTAATGAT
TTTCCAAACTGGTTACCTGCCCATCGGCTCTCCTTTTCATCTCGGACATT
TTTACCTGAGAAGAGTAACACGATCTTAAAAAATCTACTTGATGTGATAA
AAGAACCAGATTTCGACCGATATGAATACATGCACCGATACCTTCTTTCA
AGAGATGACATGTTTAATGAAACATGCATGAAGGAAATTACTAGGATCAA
TATCTACATGACGTTCCCTGATGATCTTTATTTTCCGTATTTTGTTGCCT
TATTGAAAAAAGTGAACGCTTTGCgtgaaataaaaaagacaaaaccgTTG
GGGATCAAGATACACTTTACTAAATATAAACTTTACAGACTTTTATATAA
TTTAAGGCAGTTTACTGAGAAGTTATCCCCTAGTTTAATGCTCACTTATT
TGAGCAATAGAGAAGAAATAAATCTTTGGCAAAAAGAAGGTGAAATCGTT
TCTTTAAGTATTCGAGATTGGTTCTTCATACCAAGCGATAGAGCACGCGA
AGTTTTTTCATCACCAAACATCACCCATTACAGATGGGCGTCTTCAGTTC
CGAAAGATTGTATCCGTAATGTGAAAACGAAAACATTTGAATCGATTGAT
GATCTTATGGAGATGATgaacaaagatatttgtgaaAGACGAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028089-exon-sc0000662-1491911889:79184..80561 | TCONS_00028089-exon-sc0000662-1491911889:79184..80561 | Clytia hemisphaerica | exon |
| TCONS_00028089-exon-sc0000662-1510915933:79184..80561 | TCONS_00028089-exon-sc0000662-1510915933:79184..80561 | Clytia hemisphaerica | exon |
| TCONS_00028089-exon-sc0000662-1575043694:79184..80561 | TCONS_00028089-exon-sc0000662-1575043694:79184..80561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000662 | supercontig | sc0000662:79184..80561 . |
Blast
The following BLAST results are available for this feature:
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