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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028111 ID=TCONS_00028111|Name=TCONS_00028111|organism=Clytia hemisphaerica|type=transcript|length=2870bp
GTTTTGTAATATATACAATGCAGTAAAATACTGATGTGGACTtagtaaaa
ttgtaaaataaaatataagatagttatgaaaatataaataaatggATGAT
ATTTATTGCATGATTCGAATAAAATAAGTAATTGTATAAATATGTTAAAA
TCAATTAGTattaaagtctttataaaaaagtatataaaacCTGGATTTAT
TAGTTTAAGATTGTCCTGACTAGACCAGACACAGGAACAAGGGGATTGAT
TAATAAGTTGGTATTAGGATAGAATTAATTTAGCAAAACTCGAGACACAA
CCTACAGAACTTGAATTTTAACAACTGCACCGAGGCAAagagaaataaat
aaataatgtttattcaaagtaatacggtaatTGTTTAATTTGATATGTCC
ATTTTTGTGTGTTCTctcaaagtttgtttttttcaaagttttttcaaaac
tccATCAGCCTTTTTCTCAAAAGTAAAACCTGGTAAAACACCTTcttttt
tctattaaaaatgattacaattttttctctactCACGTACTACCTTAAAG
GGAACTGTTAATTTCcactttttttgcaatttttcaacaaaaccCTGAAA
TTTAGAAAACCCGCAAATTACAAAATTGGCCATTATGcaaccaaattttg
aaaaatccctagcaAATAATGAAAAAGTGTTCCTgcgaaaaacaattttt
tcgattgtttttatAATTCTTGGGAAATTAATCAGTTCTTGACTGGGGGT
GCAAATTTTTATCAAACTATGCAAGCTTTTGTAAGCAGACAGTCTTGGTG
ATATGATACTGGCTTCATAGTCAATAGCTATGTAAGAGCATATTAATATT
TTCATAACATTTGATTAGAAATATAATATCACAATGTCACAAACACCAAT
AAACCAGATGCAAGACAGGAAACCAGATATCAATATCTTAACACAACAAC
TTAAAACTGCCCAAAGTTTTGCCGGTCCAATTACTCCCACGGCTACAGTG
AAGGTTGAACCGAAGGAAGAGGAACAGATGCCAACAAGTGGAACCAATTT
ATCAGAATTTGTTAACCAGCTTGAAGATTATGTACCAACAGTGCCAGATG
CAGTCACTGTCAGTTATATGCAAAGAGCTGGTTTTGAGAATATTGATCCA
CGTATAGTAAGATTGATATCATTAGCATCTCAAAAGTTTGTATCAGACAT
TGCTCACGATGCGTTGCAACATTGTAAAATGCGTGGTCAAAGTGGACAGA
GCTCCCGTAAATCAGGAAAAGATAAGAGATATACTTTATCAATGGATGat
ttgagccctgcattgaatgAATACGGAGTACATGTTAAAAAACCTCCATA
TTTTACATAATTATCTGCAAAAGCTTTTTACCTACCTAATTTCACTATCA
CTGTCAGTTGAGATATGGGAACAATcatcattgggctcttccagaaattA
TCCGttgtgaaaaatctacaaaatgtgCCTTGTCTAGGGGGTaatgtttg
agggtaattttgattgtctgtgggatcaactgatgcttgtctgggggtta
gacctgctgtccagGGGTTCAAAAGTCTCAATGTCACAATGgtagatttc
caaaaaatgttatatcctccattaaaactttttctggaaaagcccattat
caAATCAGACTATTAGGAAGGTTATCAGAAGTAACTTGtattataattat
ctttttaattgttttatatttatatatctTTGTctgaataatataaaata
acCATAAAGGTTGTTCACAATCATTGATTTTGCAAGTGAAACAAAACATA
GTTACTAAGGCTAGTGGACAAAATTCTCATAGTTTTCGACCCAAGACTCA
GAAATTATGTATTCCCCCCCCTCTCTGTCTCTTCATCTCATCTATCTTTA
GATAATGATTTTTAAAGATAATTTGAAGATTATTAAGtgaatattttgaa
ttattggggaaagattttataaaagaccttcatttcgtttttttttataa
tttcaatttcacccAAATTCTAGTTTCATACTTTCCagtgcatttttttt
ttctctgagaTGTTTTTTAGTAAAATCAAGCATATAGTTACATCACCAAC
GATCCATAAGATGAGCAAAGCATCaacattttcaatcaaatccaTTGATC
ATGTGGTTTTAACTGTCCAAAGCATTGACAAaactatcaaattttatgaa
gattGTCTTAACATGAAAGTGGAAACTTTTGGTAATGGTAGAAAAGCTTT
GAAATTTGgaaattcgaaattcaatttacATGAATATGGAAACGAGTTTG
AACCAAAAGCCAAAACACCACAACCAGGCTCAGTAGATATATGTTTGATT
GCGGAAGAAAAGTTACCAGTAATCATTGAACATCTTAAGGAACGTAATGT
TGTTATTGAGGAAGGGATTGTTCCTCGGACTGGTGCTTGTGGACCAATTC
AATCAATTTATATTCGAGATCCAGatgaaaatttaattgaaatctcaaat
tattaaaattctggtttttctattttatatcTTGATCAGGAAAAGCTGAA
AGACTAAAGCATATTATATAAATAATGTCACTGGGAAATAAGACAGCTTT
GTTCATTATCATTTTGTTGGTTTTATGTTaaagttggttgattttggGGT
TGATTATACAGTATAAGtggtttttttaatttataaataagaatcaaaaa
agttttctaacaatgttttttgattgaaatcatATTTTTGATAGTATTTG
ATACTCCTTAATAGTTTCAATGAATTATACATCGTTTTTATAATCCTTAT
ATTTTATTTGTATTATAAttcattatttgaaaatatgaaaagaataaaat
acTTCATTCTTAAAATACTG Run BLAST on NCBI transcript from alignment at sc0000664:33994..36863- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028111 ID=TCONS_00028111|Name=TCONS_00028111|organism=Clytia hemisphaerica|type=transcript|length=2870bp|location=Sequence derived from alignment at sc0000664:33994..36863- (Clytia hemisphaerica)
GTTTTGTAATATATACAATGCAGTAAAATACTGATGTGGACTTAGTAAAA
TTGTAAAATAAAATATAAGATAGTTATGAAAATATAAATAAATGGATGAT
ATTTATTGCATGATTCGAATAAAATAAGTAATTGTATAAATATGTTAAAA
TCAATTAGTATTAAAGTCTTTATAAAAAAGTATATAAAACCTGGATTTAT
TAGTTTAAGATTGTCCTGACTAGACCAGACACAGGAACAAGGGGATTGAT
TAATAAGTTGGTATTAGGATAGAATTAATTTAGCAAAACTCGAGACACAA
CCTACAGAACTTGAATTTTAACAACTGCACCGAGGCAAAGAGAAATAAAT
AAATAATGTTTATTCAAAGTAATACGGTAATTGTTTAATTTGATATGTCC
ATTTTTGTGTGTTCTCTCAAAGTTTGTTTTTTTCAAAGTTTTTTCAAAAC
TCCATCAGCCTTTTTCTCAAAAGTAAAACCTGGTAAAACACCTTCTTTTT
TCTATTAAAAATGATTACAATTTTTTCTCTACTCACGTACTACCTTAAAG
GGAACTGTTAATTTCCACTTTTTTTGCAATTTTTCAACAAAACCCTGAAA
TTTAGAAAACCCGCAAATTACAAAATTGGCCATTATGCAACCAAATTTTG
AAAAATCCCTAGCAAATAATGAAAAAGTGTTCCTGCGAAAAACAATTTTT
TCGATTGTTTTTATAATTCTTGGGAAATTAATCAGTTCTTGACTGGGGGT
GCAAATTTTTATCAAACTATGCAAGCTTTTGTAAGCAGACAGTCTTGGTG
ATATGATACTGGCTTCATAGTCAATAGCTATGTAAGAGCATATTAATATT
TTCATAACATTTGATTAGAAATATAATATCACAATGTCACAAACACCAAT
AAACCAGATGCAAGACAGGAAACCAGATATCAATATCTTAACACAACAAC
TTAAAACTGCCCAAAGTTTTGCCGGTCCAATTACTCCCACGGCTACAGTG
AAGGTTGAACCGAAGGAAGAGGAACAGATGCCAACAAGTGGAACCAATTT
ATCAGAATTTGTTAACCAGCTTGAAGATTATGTACCAACAGTGCCAGATG
CAGTCACTGTCAGTTATATGCAAAGAGCTGGTTTTGAGAATATTGATCCA
CGTATAGTAAGATTGATATCATTAGCATCTCAAAAGTTTGTATCAGACAT
TGCTCACGATGCGTTGCAACATTGTAAAATGCGTGGTCAAAGTGGACAGA
GCTCCCGTAAATCAGGAAAAGATAAGAGATATACTTTATCAATGGATGAT
TTGAGCCCTGCATTGAATGAATACGGAGTACATGTTAAAAAACCTCCATA
TTTTACATAATTATCTGCAAAAGCTTTTTACCTACCTAATTTCACTATCA
CTGTCAGTTGAGATATGGGAACAATCATCATTGGGCTCTTCCAGAAATTA
TCCGTTGTGAAAAATCTACAAAATGTGCCTTGTCTAGGGGGTAATGTTTG
AGGGTAATTTTGATTGTCTGTGGGATCAACTGATGCTTGTCTGGGGGTTA
GACCTGCTGTCCAGGGGTTCAAAAGTCTCAATGTCACAATGGTAGATTTC
CAAAAAATGTTATATCCTCCATTAAAACTTTTTCTGGAAAAGCCCATTAT
CAAATCAGACTATTAGGAAGGTTATCAGAAGTAACTTGTATTATAATTAT
CTTTTTAATTGTTTTATATTTATATATCTTTGTCTGAATAATATAAAATA
ACCATAAAGGTTGTTCACAATCATTGATTTTGCAAGTGAAACAAAACATA
GTTACTAAGGCTAGTGGACAAAATTCTCATAGTTTTCGACCCAAGACTCA
GAAATTATGTATTCCCCCCCCTCTCTGTCTCTTCATCTCATCTATCTTTA
GATAATGATTTTTAAAGATAATTTGAAGATTATTAAGTGAATATTTTGAA
TTATTGGGGAAAGATTTTATAAAAGACCTTCATTTCGTTTTTTTTTATAA
TTTCAATTTCACCCAAATTCTAGTTTCATACTTTCCAGTGCATTTTTTTT
TTCTCTGAGATGTTTTTTAGTAAAATCAAGCATATAGTTACATCACCAAC
GATCCATAAGATGAGCAAAGCATCAACATTTTCAATCAAATCCATTGATC
ATGTGGTTTTAACTGTCCAAAGCATTGACAAAACTATCAAATTTTATGAA
GATTGTCTTAACATGAAAGTGGAAACTTTTGGTAATGGTAGAAAAGCTTT
GAAATTTGGAAATTCGAAATTCAATTTACATGAATATGGAAACGAGTTTG
AACCAAAAGCCAAAACACCACAACCAGGCTCAGTAGATATATGTTTGATT
GCGGAAGAAAAGTTACCAGTAATCATTGAACATCTTAAGGAACGTAATGT
TGTTATTGAGGAAGGGATTGTTCCTCGGACTGGTGCTTGTGGACCAATTC
AATCAATTTATATTCGAGATCCAGATGAAAATTTAATTGAAATCTCAAAT
TATTAAAATTCTGGTTTTTCTATTTTATATCTTGATCAGGAAAAGCTGAA
AGACTAAAGCATATTATATAAATAATGTCACTGGGAAATAAGACAGCTTT
GTTCATTATCATTTTGTTGGTTTTATGTTAAAGTTGGTTGATTTTGGGGT
TGATTATACAGTATAAGTGGTTTTTTTAATTTATAAATAAGAATCAAAAA
AGTTTTCTAACAATGTTTTTTGATTGAAATCATATTTTTGATAGTATTTG
ATACTCCTTAATAGTTTCAATGAATTATACATCGTTTTTATAATCCTTAT
ATTTTATTTGTATTATAATTCATTATTTGAAAATATGAAAAGAATAAAAT
ACTTCATTCTTAAAATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028111-exon-sc0000664-1575043694:33994..36863 | TCONS_00028111-exon-sc0000664-1575043694:33994..36863 | Clytia hemisphaerica | exon |
| TCONS_00028111-exon-sc0000664-1510915933:33994..36863 | TCONS_00028111-exon-sc0000664-1510915933:33994..36863 | Clytia hemisphaerica | exon |
| TCONS_00028111-exon-sc0000664-1491911889:33994..36863 | TCONS_00028111-exon-sc0000664-1491911889:33994..36863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000664 | supercontig | sc0000664:33994..36863 - |
Blast
BLAST of TCONS_00028111 vs. Swiss-Prot (Human)
Match: GLOD5 (Glyoxalase domain-containing protein 5 OS=Homo sapiens GN=GLOD5 PE=1 SV=3) HSP 1 Score: 159.073 bits (401), Expect = 3.849e-44 Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 2
Query: 2135 IKSIDHVVLTVQSIDKTIKFYEDCLNMKVETFGNGRKALKFGNSKFNLHEYGNEFEPKAKTPQPGSVDICLIAEEKLPVIIEHLKERNVVIEEGIVPRTGACGPIQSIYIRDPDENLIEISNY*NS 2512
I+ +DH+V+TV+SI T FY L M+V TF RKAL FG+ KFNLHE G EFEPKA P PGS+DICLI E L +I+HLK +V IEEG VPRTGA GPI SIY RDPD NLIE+SNY +S
Sbjct: 35 IRRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKEDRKALCFGDQKFNLHEVGKEFEPKAAHPVPGSLDICLITEVPLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPDRNLIEVSNYISS 160
The following BLAST results are available for this feature:
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