TCONS_00028119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028119
Unique NameTCONS_00028119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028119 ID=TCONS_00028119|Name=TCONS_00028119|organism=Clytia hemisphaerica|type=transcript|length=820bp
NNTTTCTATACCTTCAATAAgttctttattcagattttcagttttaaaga
gttttttgaagtttcgtAATGGAATTCGTAAGTCTAGCAATTGGGTGACA
ATAGCGTCATTCTCAGCTATGGTGTCTGATGAAATTGGATTCTTGATGAT
GAGGTCCGTGATCTCTTCGAGGAGTATTTCTGCCTCCACTTCAGCTTTGG
GAGACATGATGTGCCTTGATAGCTTGATATCAGATTGAGTTGAATGGGGT
ACCTTTGGTTTAATGTCAACTTGATTGGATGATTCAGTTGGTAAGGTATC
CTCTTGACTTCGATCAGATGTGTCTGGTGATTTGTAAGATGTGTCCAGTG
ATTTGTCGGATGTGTCCGGTGATTTGTCGGATGTGTCCGGTGATTTGTCA
GATGTGTCCGGTGATTTGTCAGATGTGTCCGGTGATTTGTCAGATGTGTC
CGGTGATTTGTCGGACGTGTCCGCTGATTTGTCGGACGTGTCCGGTGATT
TGTCGGACGTGTCCGGTGATTTGTCGGATGTGTCCGGTGATTTGTCGGAT
GTGTCTGGTGATTAGTAAGATGTGTCCAGTAGTTGTTTGGATGTTTCCAG
TGATTCGTCTAGTGATGACCTTCCGAGTGAATTGAATAGACTGTAGTCTG
ATATTCTTTTGGTCTTTCTAGTCGATCTGCGTAAGGACATTTGATGTTGA
TAAGTGATGACTGATTGCCTGAGTGATGGATGACGAATTGGTCTGATTGT
CTGGTCGCCTTGATGATTGGATCTGTTTGACTGTGGGGTTACCGGTGCTG
GCGGGCATTAATCAGGCGAG
Run BLAST on NCBI

transcript from alignment at sc0000664:53836..54655

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028119 ID=TCONS_00028119|Name=TCONS_00028119|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0000664:53836..54655 (Clytia hemisphaerica)
CTCGCCTGATTAATGCCCGCCAGCACCGGTAACCCCACAGTCAAACAGAT
CCAATCATCAAGGCGACCAGACAATCAGACCAATTCGTCATCCATCACTC
AGGCAATCAGTCATCACTTATCAACATCAAATGTCCTTACGCAGATCGAC
TAGAAAGACCAAAAGAATATCAGACTACAGTCTATTCAATTCACTCGGAA
GGTCATCACTAGACGAATCACTGGAAACATCCAAACAACTACTGGACACA
TCTTACTAATCACCAGACACATCCGACAAATCACCGGACACATCCGACAA
ATCACCGGACACGTCCGACAAATCACCGGACACGTCCGACAAATCAGCGG
ACACGTCCGACAAATCACCGGACACATCTGACAAATCACCGGACACATCT
GACAAATCACCGGACACATCTGACAAATCACCGGACACATCCGACAAATC
ACCGGACACATCCGACAAATCACTGGACACATCTTACAAATCACCAGACA
CATCTGATCGAAGTCAAGAGGATACCTTACCAACTGAATCATCCAATCAA
GTTGACATTAAACCAAAGGTACCCCATTCAACTCAATCTGATATCAAGCT
ATCAAGGCACATCATGTCTCCCAAAGCTGAAGTGGAGGCAGAAATACTCC
TCGAAGAGATCACGGACCTCATCATCAAGAATCCAATTTCATCAGACACC
ATAGCTGAGAATGACGCTATTGTCACCCAATTGCTAGACTTACGAATTCC
ATTacgaaacttcaaaaaactctttaaaactgaaaatctgaataaagaac
TTATTGAAGGTATAGAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015910XLOC_015910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028119-exon-sc0000664-1491911889:53836..54655TCONS_00028119-exon-sc0000664-1491911889:53836..54655Clytia hemisphaericaexon
TCONS_00028119-exon-sc0000664-1510915933:53836..54655TCONS_00028119-exon-sc0000664-1510915933:53836..54655Clytia hemisphaericaexon
TCONS_00028119-exon-sc0000664-1575043694:53836..54655TCONS_00028119-exon-sc0000664-1575043694:53836..54655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000664supercontigsc0000664:53836..54655 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.849909	0.948388	1.11214	0.601793	0.559536	0.495015	0.522562	0.78508	0.0978606	0.458027	0.352966	0.205482	0.0911898	0.296457	0.0837213	0	0	0.0446775	0	0.193771	0.168422	0.246451	0.0665762	0.233953	0.623419	0.38947	0.159237	0.326162	0.270717	0.290448
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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