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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028120 ID=TCONS_00028120|Name=TCONS_00028120|organism=Clytia hemisphaerica|type=transcript|length=2089bp
aagaaagcaagttgacaaaagtaGTTTTAGAAACACCCtcaaaagttaca
aagaaagcgggttgataaaagtgatcttagaaacaaagaaagtaatgAAG
AAACTGgaagaaagcaagtcgataaaagtaaaaaaacttagaaacaccct
gaaagcCACAAAGGAAGCtagtattaaaagaataggctaagtaagagaca
ggggtgtaagagatctattttcaactctcaagttaatggtttattccttt
tttcattcggacatcatgaccgacacaaaagattttcagtcggtcaaatg
gctttttcagtcggacattgaccgatgaccgacgcttatttgcagccTTG
CCTTTTGATAGAAATACTTTTCAGCTCTGATAATTTCTTCATTTGATAGG
ATGAGTGGTTTGGAAGTTTGGACAATCaaccttttcttttgtttccattt
tgatatGAAACTTTTGCAAAATCGAATAACATATGCCAAGATGCAAACAG
TGATTGAAAATCTACGATGGTTAGGGTCGATCAGATATTTGGAGAATTGA
TACCTCTGTTTTGCAAGTTGAATTGGATCAGGTGTACTTGAAGCATGATG
AACAAGAATTGTCCTCTCTTTGTCGATTTCTTTGATTTCCGAGTCGGTTA
CTTTCAGGTCTTGAGCAGATTTGATTGGAAATTCCGTTGATGGAAGTCTC
ATCCAGTCCATACCGTTCATCCACTTTGAGTCTTGGCTGACATCAGCAAT
GGTTGCACCATGTCTGGTTCCAAGATCTGCAATCATGTTGTTTGTTGGTA
TGTAGAACAAGtcttcttttgatttgaaacGGTTGATCTCTACCACACGG
TTTCTGACCCACAACTTCAGTGGCTTTTCATCATTGGAGATCCAATGGAG
AGCAATTTGTGAATCTGTGAATTTGAGTGAGGACTTGTGTAGTGTTCCAA
ATGATCTACGAACTACTTCACCAGTGTGAGTGTTGATAAGTGCAGCAAGT
AGTTCAGCACGTGGCAATGAGAGTCCTTTTGGTACTGTGCGTGTTCTTGC
AAACACAAGTTGGCAGGAGAATGAACCATTTTTCCGTTGGAATCGTGCAT
AGATGCAGGTGCAGATTAATGATTTGCTTGAGTCGCCAAAGTCCAATGTG
TGTATGTCTGTGTTGAGAGCATCTTCTGGTACGATGGCGCGTTTGAAACA
TACTTCTCCGAGGTCTTTCATCATTTTGAAGTTGTCCAACCACGTTTGAC
GGAGTTCATCAGGAATGATATCATTCCAGTCAAGTTGTTGTGCTGTTAAT
TCGTGAAGATCGAGTTTCATTGAAGCAACGAGTGGTGACATTTTCCCTGT
CAGATCAAAAATTTCTGCAACTTTGGATGCACAATCTCTAAGTGTTAGCT
TGTCCGGGATGATGTTAGAtgcttttgaagatttctttccCCTCCTCTTC
TTGGAGAAATTGAGGTCTGAGATACTGAGTGTGAGTTCGTCGGTTTCAGG
GAACCATCTCATTCCTCCAACAGAGATACTTGAACCGTCTTCTGATAAGT
CTTCGGTTGGTTTCATTCCAGAGAAGGTGAAGCCTTTGAGAGTGAAATTT
CCTCTGTTGATGACAGCCTGTAATTCATCTGCACGTTTGAATGCTTCTTT
GGTGGATGACTCTCCTGTGATACAGTCGTCAACGTAGACGTCTTCTTTGA
TGATATGGTTGACTTCAGGGTACTCCTTGCTGAAGAGTTGACCAATGGAT
CGCAGACCACATTCCGCTTGATTTCCTGATGATCGGACTCCGTAAATGAG
CGTCttaatgattttttctttaGGGATTTTTGATGGATCCAAGTCTTTTT
GCCATATGTACCTCTGGAATTGCCAGTGCTCTTGATGTAGATTAATGGTG
TTGTACATCTTTCGGATGTCAGTGTGGATGCCAATCAGGTGTGTTGACCA
ACGGATGAGAAGATTTTGTAGTTTGTTATAGTTGTTTTGTCCTTTGGCCA
GGATGTCATTGAGGCTGACACCAGATGATGTTGGATGCGATGCATCAAAT
ACAACACGACATGGAGTGCTGACAGAACTCTCCTTCCAG Run BLAST on NCBI protein sequence of TCONS_00028120-protein >TCONS_00028120-protein ID=TCONS_00028120-protein|Name=TCONS_00028120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=593bp
WKESSVSTPCRVVFDASHPTSSGVSLNDILAKGQNNYNKLQNLLIRWSTH
LIGIHTDIRKMYNTINLHQEHWQFQRYIWQKDLDPSKIPKEKIIKTLIYG
VRSSGNQAECGLRSIGQLFSKEYPEVNHIIKEDVYVDDCITGESSTKEAF
KRADELQAVINRGNFTLKGFTFSGMKPTEDLSEDGSSISVGGMRWFPETD
ELTLSISDLNFSKKRRGKKSSKASNIIPDKLTLRDCASKVAEIFDLTGKM
SPLVASMKLDLHELTAQQLDWNDIIPDELRQTWLDNFKMMKDLGEVCFKR
AIVPEDALNTDIHTLDFGDSSKSLICTCIYARFQRKNGSFSCQLVFARTR
TVPKGLSLPRAELLAALINTHTGEVVRRSFGTLHKSSLKFTDSQIALHWI
SNDEKPLKLWVRNRVVEINRFKSKEDLFYIPTNNMIADLGTRHGATIADV
SQDSKWMNGMDWMRLPSTEFPIKSAQDLKVTDSEIKEIDKERTILVHHAS
STPDPIQLAKQRYQFSKYLIDPNHRRFSITVCILAYVIRFCKSFISKWKQ
KKRLIVQTSKPLILSNEEIIRAEKYFYQKARLQISVGHRSMSD Run BLAST on NCBI transcript from alignment at sc0000664:57565..59653 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028120 ID=TCONS_00028120|Name=TCONS_00028120|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at sc0000664:57565..59653 (Clytia hemisphaerica)
CTGGAAGGAGAGTTCTGTCAGCACTCCATGTCGTGTTGTATTTGATGCAT
CGCATCCAACATCATCTGGTGTCAGCCTCAATGACATCCTGGCCAAAGGA
CAAAACAACTATAACAAACTACAAAATCTTCTCATCCGTTGGTCAACACA
CCTGATTGGCATCCACACTGACATCCGAAAGATGTACAACACCATTAATC
TACATCAAGAGCACTGGCAATTCCAGAGGTACATATGGCAAAAAGACTTG
GATCCATCAAAAATCCCtaaagaaaaaatcattaaGACGCTCATTTACGG
AGTCCGATCATCAGGAAATCAAGCGGAATGTGGTCTGCGATCCATTGGTC
AACTCTTCAGCAAGGAGTACCCTGAAGTCAACCATATCATCAAAGAAGAC
GTCTACGTTGACGACTGTATCACAGGAGAGTCATCCACCAAAGAAGCATT
CAAACGTGCAGATGAATTACAGGCTGTCATCAACAGAGGAAATTTCACTC
TCAAAGGCTTCACCTTCTCTGGAATGAAACCAACCGAAGACTTATCAGAA
GACGGTTCAAGTATCTCTGTTGGAGGAATGAGATGGTTCCCTGAAACCGA
CGAACTCACACTCAGTATCTCAGACCTCAATTTCTCCAAGAAGAGGAGGg
gaaagaaatcttcaaaagcaTCTAACATCATCCCGGACAAGCTAACACTT
AGAGATTGTGCATCCAAAGTTGCAGAAATTTTTGATCTGACAGGGAAAAT
GTCACCACTCGTTGCTTCAATGAAACTCGATCTTCACGAATTAACAGCAC
AACAACTTGACTGGAATGATATCATTCCTGATGAACTCCGTCAAACGTGG
TTGGACAACTTCAAAATGATGAAAGACCTCGGAGAAGTATGTTTCAAACG
CGCCATCGTACCAGAAGATGCTCTCAACACAGACATACACACATTGGACT
TTGGCGACTCAAGCAAATCATTAATCTGCACCTGCATCTATGCACGATTC
CAACGGAAAAATGGTTCATTCTCCTGCCAACTTGTGTTTGCAAGAACACG
CACAGTACCAAAAGGACTCTCATTGCCACGTGCTGAACTACTTGCTGCAC
TTATCAACACTCACACTGGTGAAGTAGTTCGTAGATCATTTGGAACACTA
CACAAGTCCTCACTCAAATTCACAGATTCACAAATTGCTCTCCATTGGAT
CTCCAATGATGAAAAGCCACTGAAGTTGTGGGTCAGAAACCGTGTGGTAG
AGATCAACCgtttcaaatcaaaagaagaCTTGTTCTACATACCAACAAAC
AACATGATTGCAGATCTTGGAACCAGACATGGTGCAACCATTGCTGATGT
CAGCCAAGACTCAAAGTGGATGAACGGTATGGACTGGATGAGACTTCCAT
CAACGGAATTTCCAATCAAATCTGCTCAAGACCTGAAAGTAACCGACTCG
GAAATCAAAGAAATCGACAAAGAGAGGACAATTCTTGTTCATCATGCTTC
AAGTACACCTGATCCAATTCAACTTGCAAAACAGAGGTATCAATTCTCCA
AATATCTGATCGACCCTAACCATCGTAGATTTTCAATCACTGTTTGCATC
TTGGCATATGTTATTCGATTTTGCAAAAGTTTCatatcaaaatggaaaca
aaagaaaaggttGATTGTCCAAACTTCCAAACCACTCATCCTATCAAATG
AAGAAATTATCAGAGCTGAAAAGTATTTCTATCAAAAGGCAAggctgcaa
ataagcgtcggtcatcggtcaatgtccgactgaaaaagccatttgaccga
ctgaaaatcttttgtgtcggtcatgatgtccgaatgaaaaaaggaataaa
ccattaacttgagagttgaaaatagatctcttacacccctgtctcttact
tagcctattcttttaatactaGCTTCCTTTGTGgctttcagggtgtttct
aagtttttttacttttatcgacttgctttcttcCAGTTTCTTcattactt
tctttgtttctaagatcacttttatcaacccgctttctttgtaacttttg
aGGGTGTTTCTAAAACtacttttgtcaacttgctttctt Coding sequence (CDS) from alignment at sc0000664:57565..59653 >TCONS_00028120 ID=TCONS_00028120|Name=TCONS_00028120|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0000664:57565..59653 (Clytia hemisphaerica)
TGGAAGGAGAGTTCTGTCAGCACTCCATGTCGTGTTGTATTTGATGCATC
GCATCCAACATCATCTGGTGTCAGCCTCAATGACATCCTGGCCAAAGGAC
AAAACAACTATAACAAACTACAAAATCTTCTCATCCGTTGGTCAACACAC
CTGATTGGCATCCACACTGACATCCGAAAGATGTACAACACCATTAATCT
ACATCAAGAGCACTGGCAATTCCAGAGGTACATATGGCAAAAAGACTTGG
ATCCATCAAAAATCCCtaaagaaaaaatcattaaGACGCTCATTTACGGA
GTCCGATCATCAGGAAATCAAGCGGAATGTGGTCTGCGATCCATTGGTCA
ACTCTTCAGCAAGGAGTACCCTGAAGTCAACCATATCATCAAAGAAGACG
TCTACGTTGACGACTGTATCACAGGAGAGTCATCCACCAAAGAAGCATTC
AAACGTGCAGATGAATTACAGGCTGTCATCAACAGAGGAAATTTCACTCT
CAAAGGCTTCACCTTCTCTGGAATGAAACCAACCGAAGACTTATCAGAAG
ACGGTTCAAGTATCTCTGTTGGAGGAATGAGATGGTTCCCTGAAACCGAC
GAACTCACACTCAGTATCTCAGACCTCAATTTCTCCAAGAAGAGGAGGgg
aaagaaatcttcaaaagcaTCTAACATCATCCCGGACAAGCTAACACTTA
GAGATTGTGCATCCAAAGTTGCAGAAATTTTTGATCTGACAGGGAAAATG
TCACCACTCGTTGCTTCAATGAAACTCGATCTTCACGAATTAACAGCACA
ACAACTTGACTGGAATGATATCATTCCTGATGAACTCCGTCAAACGTGGT
TGGACAACTTCAAAATGATGAAAGACCTCGGAGAAGTATGTTTCAAACGC
GCCATCGTACCAGAAGATGCTCTCAACACAGACATACACACATTGGACTT
TGGCGACTCAAGCAAATCATTAATCTGCACCTGCATCTATGCACGATTCC
AACGGAAAAATGGTTCATTCTCCTGCCAACTTGTGTTTGCAAGAACACGC
ACAGTACCAAAAGGACTCTCATTGCCACGTGCTGAACTACTTGCTGCACT
TATCAACACTCACACTGGTGAAGTAGTTCGTAGATCATTTGGAACACTAC
ACAAGTCCTCACTCAAATTCACAGATTCACAAATTGCTCTCCATTGGATC
TCCAATGATGAAAAGCCACTGAAGTTGTGGGTCAGAAACCGTGTGGTAGA
GATCAACCgtttcaaatcaaaagaagaCTTGTTCTACATACCAACAAACA
ACATGATTGCAGATCTTGGAACCAGACATGGTGCAACCATTGCTGATGTC
AGCCAAGACTCAAAGTGGATGAACGGTATGGACTGGATGAGACTTCCATC
AACGGAATTTCCAATCAAATCTGCTCAAGACCTGAAAGTAACCGACTCGG
AAATCAAAGAAATCGACAAAGAGAGGACAATTCTTGTTCATCATGCTTCA
AGTACACCTGATCCAATTCAACTTGCAAAACAGAGGTATCAATTCTCCAA
ATATCTGATCGACCCTAACCATCGTAGATTTTCAATCACTGTTTGCATCT
TGGCATATGTTATTCGATTTTGCAAAAGTTTCatatcaaaatggaaacaa
aagaaaaggttGATTGTCCAAACTTCCAAACCACTCATCCTATCAAATGA
AGAAATTATCAGAGCTGAAAAGTATTTCTATCAAAAGGCAAggctgcaaa
taagcgtcggtcatcggtcaatgtccgactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028120-exon-sc0000664-1491911889:57565..59653 | TCONS_00028120-exon-sc0000664-1491911889:57565..59653 | Clytia hemisphaerica | exon |
| TCONS_00028120-exon-sc0000664-1510915933:57565..59653 | TCONS_00028120-exon-sc0000664-1510915933:57565..59653 | Clytia hemisphaerica | exon |
| TCONS_00028120-exon-sc0000664-1575043694:57565..59653 | TCONS_00028120-exon-sc0000664-1575043694:57565..59653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000664 | supercontig | sc0000664:57565..59653 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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