TCONS_00028127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028127
Unique NameTCONS_00028127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028127 ID=TCONS_00028127|Name=TCONS_00028127|organism=Clytia hemisphaerica|type=transcript|length=324bp
CAACAATTGAGCTTTCCACGTTTGACGtcacaatcaatgatgaatggAAT
TTACAGAGAGTTCAACGGAGAAACAAAGGATCTGGTTTTTGTGGCTTGAC
GAACATTCAATGTGGAAAAGtgaaagcaattggtcaatGGACCAATAAGA
TTTGGTTTTTGTGGCTTGATGAACATTCAACGTGGAAAAAGAAACAGTTG
GTCAAGGCTCTACACTTAAGAAAACTTCTTGGATGGACGTGATGAATGGT
ATGCAAAGCAAATTTTGGATGACCTGAAGTTAAGAACTTAAAGTTTCCAT
CGATTATGCTGACTGCATGGTTCA
Run BLAST on NCBI

transcript from alignment at sc0000665:13941..16623+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028127 ID=TCONS_00028127|Name=TCONS_00028127|organism=Clytia hemisphaerica|type=transcript|length=2683bp|location=Sequence derived from alignment at sc0000665:13941..16623+ (Clytia hemisphaerica)
CAACAATTGAGCTTTCCACGTTTGACGtcacaatcaatgatgaatggAAT
TTACAGAGAGTTCAACGGAGAAACAAAGGTATGATTATTTTAGCCAATCA
ACTGTGGGATTAGATTTTTCATCAACTACAATCGACGCCGAAAAAATTGG
CATAAAAGGGGTATTACCTTAAAACTTTAAACtgtaagtgatttttaagt
gctttaatGTACGGTTAGAAAGTAGACTTTTAACCCTGAGTTTCAACACT
ATAGAAGCTTAGAATCTCACACATCTCAGGGTCTAAAAGCTCAAGAATGT
TCCAATATGGCTGAAAACATAGcatggaagccacttaaccacTCCACTgg
aacaaagtggaagtactgaaattacaattctcgcccgagctttaaattct
agaaaacgttaaaatacccaaaaattgccaatatatttcggcgctgattg
tagCAAAGAAAATGGTTTGTAGAGTATACGCAAAGATCACCGAACTCGAT
TTTTGATAGAAGATANtccaaaattgccaatatatttcggcgctgattgt
agCAAAGAAAATGGTTTGTAGAGTATACGCAAAGATCACAGAACTCGATT
TTTGATAGAAGATAATGTATTCATTTTTAGCTGTGTTATTTTTCGATTGT
TGATTGTTTCGGCAATTTCACCATCAACCAAAATGTAGTTTGACCTTTTA
CCAAATGGTGAAGTTTAATCGTGTATGAAATCTATTCAATATTATAAATC
ACAATTTTCAGGATCTGGTTTTTGTGGCTTGACGAACATTCAATGTGGAA
AAGtgaaagcaattggtcaatGGACCAATAAGTAAGACCATATTTATCTT
GGAAGACACTTAATTGAACTTTGATTGATATTATTTgcttattggaccta
cctagagatcctataaattaacctgtgttcgtccgttcgtctattcgttc
gttcgtctgttaccaaatTTTCTCGgaattgaatcataggaattttgTGA
ACCAGGCTTCTTCATAATCTCTCTTTTTTGTTTCGAGCGTAACACTCTTA
CTCTTTGGGATTTAGAGAGTTTCGAACCTACACATTAAGCCAATCatctg
tgttttaaacattcttttactTGACCCAGTGCTGAAGTTAAATCTTAAAC
GAAATCTATATAAATCACAATTTTCAGGATTTGGTTTTTGTGGCTTGATG
AACATTCAACGTGGAAAAAGAAACAGTTGGTCAAGGCTCTACACTTAAGA
AAACTTCTTGGATGGGTAAGACTTCATTCNCTCAACGTGGAAAAGGAAAC
AGTTGGTCAAGGCTCTACACTTAAGCAAACTTCTTGAATGGGTAAGACCT
TCATATTGGAAGATATTTTATTGAACTTTCATTAACGTTAATTGCTTTTT
CTGAACAAAACTAGGCTACCtttgtttcgagcgtaaaactcttCCTCTTT
GGGATATAGTGAGTTTCAAACCTATGCATTAAGCCAATCatctgtgtttt
aaacattcttttatttgaccCAATGCTGAAGTTAAGTCTTAAATGAAATC
TATAtaaatgacaattttcaggATTTGGTTTTTGTGGCTTGATGACATTC
AAAGTGGAAAAGGAAACAGTTGGTCAAGGCTCTACACTTAAGAAAACTTC
TTGGATGGGTAAGACTTCATTCatcattattttttaataaaactaggcta
cgtcatattcCCCTTTGTTTCGAACGTAAACTCCTACATACTCTTCAAAA
CTAAGGTCTAAAAAACTAGGAGCTGtgtattgtgtagactagaacATAAC
CAGGCTTAAGAAACAACATCGAACAAACTGGATAAACTTAACACCTCGTA
AAATGTTCTCATTCCATGCAAAAAGTAATAGTAGTTGCaaaactttttaa
tcaaacccatATTACTTACTCTTAGATTTGACAGACGTGATGAATGGTAT
GCAAAGCAAATTTTGGATGACCTGAAGTTAAGAACTTAAAGTAAGAACTT
ATTGTTATCTATTTTCAGccgaaaatttgaccaaatctATCATATTGTTG
TCAGTCGCACCTTGGAAACAGAAGCTTTCATCTTCTCAgttggaaaaagt
tccaccggggctttgaTGTAGCTGCGTATGTTTCAAATTCGATACATGGT
AATAAAAAATGCCTATCAGATTTTGCATAAGGTTTTTCATTCCTGTTGAT
TCATATAGTTTGACATATTTTNCTTTTCATTCCTGTTGATTCATAtaatt
tgacatatttttataagaaactcaaTTTTAGCTTCCGTCCTGCTTTTGCT
TAGCTTTCTAGCTCTATGTTTGAAACATTTGGTGCGATCACCCCTGACAT
TATACCATATTAATGCTTATTTGGTTAGGAGCTGtcgtttgccatggtta
gatctaaaaaaaattctattacGAGATAATAAAGGCTCAAGCCTAAGCAG
TctagttgcttataagaaaagaaGTGTGCTCTTTCATGTCTTTCCCCCTT
TTTAATAGAAGAGAAAACACAATGTATCGGACAGTTTTGGACACATTTAG
CAATCAAACTCGTCTACCATTTTGTCTGTAATGataccaaaaataatttt
agtgtCTTTATTCAGCTTTACTAAAACGGTATAATTGTTGTCTTATACTA
GGTTTCCATCGATTATGCTGACTGCATGGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015915XLOC_015915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028127-exon-sc0000665-1491911889:13941..14018TCONS_00028127-exon-sc0000665-1491911889:13941..14018Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1510915933:13941..14018TCONS_00028127-exon-sc0000665-1510915933:13941..14018Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1575043694:13941..14018TCONS_00028127-exon-sc0000665-1575043694:13941..14018Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1491911889:14702..14771TCONS_00028127-exon-sc0000665-1491911889:14702..14771Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1510915933:14702..14771TCONS_00028127-exon-sc0000665-1510915933:14702..14771Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1575043694:14702..14771TCONS_00028127-exon-sc0000665-1575043694:14702..14771Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1491911889:15118..15205TCONS_00028127-exon-sc0000665-1491911889:15118..15205Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1510915933:15118..15205TCONS_00028127-exon-sc0000665-1510915933:15118..15205Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1575043694:15118..15205TCONS_00028127-exon-sc0000665-1575043694:15118..15205Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1491911889:15875..15930TCONS_00028127-exon-sc0000665-1491911889:15875..15930Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1510915933:15875..15930TCONS_00028127-exon-sc0000665-1510915933:15875..15930Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1575043694:15875..15930TCONS_00028127-exon-sc0000665-1575043694:15875..15930Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1491911889:16592..16623TCONS_00028127-exon-sc0000665-1491911889:16592..16623Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1510915933:16592..16623TCONS_00028127-exon-sc0000665-1510915933:16592..16623Clytia hemisphaericaexon
TCONS_00028127-exon-sc0000665-1575043694:16592..16623TCONS_00028127-exon-sc0000665-1575043694:16592..16623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:13941..16623 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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