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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028138 ID=TCONS_00028138|Name=TCONS_00028138|organism=Clytia hemisphaerica|type=transcript|length=1560bp
ATTTGAAAAAACTCTTATGGTTAATTATGGATCTAAAGATCATTCAAGTG
TTGTTTACAGATATATTAGTTCTTCGTACAAGGTCAAATGTTTTTTGGAT
CGAAAAGTTGTTCAGAAATTGGAAATCAATGTTCAGGATGTCATTGAAAG
TAACCCTGATATAAATGGAACATCCGactttaaatttgatttaaaaatta
tggATGCTAACAACGAAGGGAATGAGGTTCAGCTTGCTAATGTTGGCGAT
CGATTAAAATTTGTGCTAAACCTTGAGAATGCTCCGAATCAAGTTAAAGC
TTCACCACAGAACTGTTATGCTACAAAACCGGACGGAAGTGGCAGATACA
ACCTTATTTCAAATAGATGTGTTGATCCAAACGAAGAAACAACCTTCATC
ACATCCCCAAGTAACGAGCTTCACTATTTCTCATGGGAGCTGTTAGCTTT
CCGATATTTCGGAGAATCAAATTCTGTGGTCATCGTGTGTGAGGTTTTGA
TCTGCAAAAACGAACCATTTTGGAATTTGTCTGAACAATGCAAAAGATGT
GATCAAACTTCTAACAGAAAACGAAGAGATGTGGATGTAGATGATGAAGT
TTTACAGAAAACCACTGTTTCATCGCAACCTCTTTTCCTTATTGAAAGAT
CCCCGAAAGAACCAGgacaatcaaatcaacaaaatgGATTCTTAGCAAAA
CCAGAGGGTATGTCTATTCTCGTTGTATTGGCTGTCGTCGTACTCCTCAG
TGGTATAGTGCACcttaagaagaaattttggccgtCGCGTAAAGCAATGt
caaagaaaacattaaatgtTGGAGCTGTTGATGAGAAAGGATTTGAAAAT
CTTGCAATGGAATAAGATTGACgtaattttgtttatttgataaTGAAGTT
AATTCACTATTTCTTTAAGCTCAGATGATCTTTTATTGTAGATTTATGCT
AGTATTGTAAGTAGATNGTTAATACACTATTTCTTTAAACTCAGATGATC
TGTAGTATTGTAAGTAGATTAATCATTTAGAGATAAATAAGTACTTCACT
CGCACCCCTGCCTCAGTGATCCGGTGAAGTAAAAGAATCTCTTTGGGGTA
ATCAAGAACTAGTAAATAAGTCTTCGCGTGGTTCTTTTTATATTAATCAT
TACATATGTCAAGTTGTATTTTCAATAGAGGTCTTgcgttacgtaatttc
cgccattatgggaTAAAACATTCGATTTCATAGAGGCGATCCGTTATGCA
AATtgaacgttttactccataatggtGAAAATCACGAAATACTTAACGAA
ATGTGAAAAACCTCTATAGCGTTTTTGAAGCAAACTGCTGGGTTTATCTT
GAGTAATAGTACTTTTATCGGGGTTAGGGTTCGGCTGCTTTTTTCGGCTA
TAGAAAAAGGACACTGATTCAGGGGTGTGCTATTGTAATTTTCTTTTCGC
TGTATAAACTATAAAGTAAGAaccaacttttcttttttttttgttcgtgg
TATCTGCATAATATTTGCTTcaagtttttgataaaaattatctCTTTAAA
TCTATTTAAC Run BLAST on NCBI transcript from alignment at sc0000665:48444..53873- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028138 ID=TCONS_00028138|Name=TCONS_00028138|organism=Clytia hemisphaerica|type=transcript|length=5430bp|location=Sequence derived from alignment at sc0000665:48444..53873- (Clytia hemisphaerica)
ATTTGAAAAAACTCTTATGGTTAATTATGGATCTAAAGATCATTCAAGTG
TTGTTTACAGATATATTAGTTCTTCGTACAAGGTCAAATGTTTTTTGGAT
CGAAAAGTTGTTCAGAAATTGGAAATCAATGTTCAGGATGTCATTGAAAG
TAACCCTGATATAAGTAAGTAAATGTATTTATGCAGTCAACAAAATTTCT
TTATTGCACATCTAATTATTTTTATAGAATGCTGTAGTTGACAAAAAAAA
ATTATTCTAACCCAGCTGGCACTTATTTCAACGTTTATTTAACGTTAAAT
GGATGTTCTGGACGTTAGACGAATGTTAAAAGAAGGTTGTGTGCCAGCTG
GGAAACAAACTCGCATCAAACATTTAAAATATCAATTTATTCCTCAGATG
GAACATCCGACTTTAAATTTANGTGAAGAAGAATTAAACATCATTGCTGG
AAACTCATTGAATGTGTTCAACGTTTCTGATGCAAGCCATTTGAGTGATA
TTATTGAAGAAATCGTACCTATCAGCTGTAATGGTAGGTGGAGAATTTGA
AAGTTTAGATAAAAAAGTTTAAACGATTTTTAGTTCATGTCATTTGAATT
AATCTTATTATGAAAGCTTTGTTATTTCTTTTTCAGAGCAAATGCTGGAA
CTTGAATGTCAATCGTATGGATTCAAAGCAGGATTTAGCTTATCTGGATT
ACAATCAAAGAATCTCCCCTACACCATTCGTTTTTCGGGATCCAATGATT
GCGGTACAATAAATAAAACGTCATCAGATCATCTCAGTAATGGTAGAATA
TGGATGTGGACCAACTATACTAGTTGTGGAGTTGAAGCATATCACGTGGG
AGACAGTATAGCATTTGAAAAAACTCTTATGGTTAATTATGGATCTAAAG
ATCATTCAAGTGTTGTTTACAGATATATTAGTTCTTCGTACAAGGTCAAA
TGTTTTTTGGATCGAAAAGTTGTTCAGAAATTGGAAATCAATGTTCAGGA
TGTCATTGAAAGTAACCCTGATATAAGTAAGTAAATGTATTTATGCAGTC
AACTTAAAATTCTTCACTGCACATCTAATTATTTTTATAGAATATTGTAG
TTGACAAAAATAATATTCTAACCCAGCTGGCACTTATTTCAACGTTTATT
TAACGTTAAATGGATGTTCTGGACGTTAGATGAATGTTGAAACAAGATTG
TGTACCAGCTGGGTAACAAACTCGCATCAAACATTTAAAACATCAATTTA
TTCCTCAGATGGAACATCCGACTTTAAATTTGATTTAAAAATTATGGATG
CTAACAACGAAGGGAATGAGGTTCAGCTTGCTAATGTTGGCGATCGATTA
AAATTTGTGCTAAACCTTGAGAATGCTCCGAATCAAGTTAAAGCTTCACC
ACAGAACTGTTATGCTACAAAACCGGACGGAAGTGGCAGATACAACCTTA
TTTCAAATAGGTATAATTTATTTTATTTTGGAAATGCGTCTTCAGAGAAG
TTACTGACCGTAAGGACGGATATGTAGATACTTCACCCTTATTCAAAGAG
TCAACCTATAAGCAAGGATTTATTATACACTGGATATACAAGTAACAGAT
TTTTGCCGATTTCTCGTAGTACACGCTATGTCCGCAGTAAAGATATTATT
GTGCACTCTCCTTCCCTCATTAAATGATTTTTCGAAGCATTTTTATTGCA
TTTCTTATCGAAAATCACTCATCCAATTCCCAAAAGAGACTTAAAAGTTT
CCTGTGAGTCAGATTCTTCCACTTAATTGCTAATTATAAGTCGTTATGGC
GTTTCAAGCTGTGAGAAAGATGCAAAAGACGTGTTGTGTATAAGAAATTT
AATATTGACACCGGAAATTTTTAAACTTCAACCTAAAAAAAACACCTTGC
CACCACGTGCCTCCAAAGAGTTTTCATAACACAGTGGAGCCAAGACACTC
ATCAAGTCTTATGTATGTTAATTTCAGCTCTTCCGGGGACAGTCTTGGAA
AGATATTTCCAATTGAAAATTTCGTGTCACTATGAGCATTTTGTCTGAAT
TTCTTGTCTAATGATGTTTTTCTCACATTAGATTTCACAAATGTATCCAG
CTTGGAATACTAGCCTTACTTTCAAAAAAATTTTTCTGCAAATGTACAAA
AAGAAAGAGCTAGAGAACTTTATGAAAATAAAACTGATAAACATTTTCAA
AAATCAGACATCTTCGAGCCGCCATGACAGTTGTACTTTGCGGACAAAGC
TAGAACATCAATTGTTTTCTAAAACAATGAAAATACAATGATCGCTCTCC
GTCGTTTTATGAGTCGTTTATCCAGTGTATAATAAATCTTTGCTATAAGA
AACTCGAAACTCATTTTCACAAAGCTTGTTGAAAAATCGTCGAAAAGGGA
GCCTTCGGGTCATCCTTCATTACGGTCGTAAAAGTAAAACCATAAAAGTA
TGTAAGAAAAGTAATTATAAATGGCGGACTTGGGACTTGGATACCATAGT
TTTTCAAAATAGGCAAACCACGAGAACCATGGCGTTTAGAATGCCATGAC
GTGGAACAAATCATTCTTTTTATCGAGACTTCTCAACCAACTGGCCACCC
ACAAAGGCAATAAACAAGTGGTAACCTTACTGTAAACCAGTTCATGCCCT
AGACAAGAGTATACTTCTGGCTCGTACCCCTTCTAGCTGAACTTAGCTTA
CTAATTATTTTTGATGACGCTGAGTTCAGTGGAATAGACTAGTAGCTAAT
GGCAAGATCGCCATTTTCACCAAAACTTCCAAATAACAAAAAGGACAAAA
AGCTGCTTGGACTTGAACATTAGATTCTGAGAGAAAAACCAGCGTAAACA
AAAGAGATTTACAATATTCTATCATGAAAATAAAATATTGCACAATCTAT
TGTTTACTTTCCAAAATCAACTTAATTCTACCAGACTGCTCTACAGTCTG
GCTGGCCAGAGTAAAAATAATAAATGCCGTGAATACTTAAAGGCAACTTA
TCAGCTTTACCTAGTCTATCAAAGCTCGAAGTGACATCCAGGCGAATCAT
CCGTTNGCTTGGACTTGAACATTAGTTTTAGATAGAAAAACCAGCATAAA
CTAAAGAGATCTACAATATTCTATTATGAAAATAAAACATTACACAATTG
TTTACATTCCAAAATCAACTGAATTCTACCAGACTGCTTTACAGTCCGAC
TGGCCAGAGTAAAAAAAATAAATGCCGCGAATACTTCAAGGCAACTTATC
AGCGTTGTCCAGTCTATCAAAGCTCGAAATGACATCCAGGCGACTTATCC
CTCTGTACCCTTCTAACTATCTTTCTGTTAGCAAGCACGACTTAAATTAG
ATTAGCCTTACTATATTTTCATTATCAACTGTAGATGTGTTGATCCAAAC
GAAGAAACAACCTTCATCACATCCCCAAGTAACGAGCTTCACTATTTCTC
ATGGGAGCTGTTAGCTTTCCGATATTTCGGAGAATCAAATTCTGTGGTCA
TCGTGTGTGAGGTTTTGATCTGCAAAAACGAACCATTTTGGAATTTGTCT
GAACAATGCAAAAGATGTGATCAAACTTCTAACAGAAAACGAAGAGATGT
GGATGTAGATGATGAAGTTTTACAGAAAACCACTGTTTCATCGCAACCTC
TTTTCCTTATTGAAAGATCCCCGAAAGAACCAGGTGAGAACTTATATAGA
TAGACCCCGAGACTAGAATTAAAAGACAAGCTCTTAACCCATTAAGTGCC
ATCACTCCGTCACTTTAAATTTAAAATATTTTCTGATTTCAAACGCGCGT
ACACGCCCCAACAAAGAAACATTTCTCGTTTTCGATAAAGTTTTTTATTC
AGGCGGGGTAAAAAAACAGGACCTACCTACCGGTACAGGACCGAAAATAT
CAGCCGATCTTTTACGATGCCAGTGGCCATCAATGTGTTAAGGATAGATT
GGGCGGCTATATGGGCTACCAGGCCGGTCCTTATTGGCGTTATTTTTGGG
CTCGCGGCGTAATAAGGGCCGGAGTAAGATGTCTGAATTTAACTACAGCC
GAGGTAAAAATGAACAACATCGAGCTTTGGGGTAATAAGGGCTGGCGTAA
AAGGGGCCGGCGTTAAAATTAGGGCCGGCGTAAAAAGGGCTGATAAGGTA
TATTTACAAACCAGCTTTTTCTAAAGCCATTTCCTCTTCTACTAGTCTAG
CACAGAAAAAAAATCGAATAATTTAACTGTGACTTTTTAGTGAATACACA
GTGAAAAGCTGCAATCTTTCAATAATATTCGGTGAAAAGTGAAATTTCGC
CGTGTGAATCGTTGAAAGACTGCAGTTCTTCACCGTAGAGTCACTCTAAA
ATTTCATGGTGAATTTCTATNTGAAAGACTGCAGTTCTTCATCGTAAAGT
CACTATAAAATGTCATGGTGAATTTCTTCCTGTGGTATTTGAAATCTACT
TTAAAGAAAATTGCTGGATATTTCCAAAAACATGAAGCTCATTTAAGAAA
ACGTCAAAAAAATCTTATTAATCTTTGTTATATAGGACAATCAAATCAAC
AAAATGGATTCTTAGCAAAACCAGAGGGTATGTCTATTCTCGTTGTATTG
GCTGTCGTCGTACTCCTCAGTGGTATAGTGCACCTTAAGAAGAAATTTTG
GCCGTCGCGTAAAGCAATGTCAAAGAAAACATTAAATGTTGGAGCTGTTG
ATGAGAAAGGATTTGAAAATCTTGCAATGGAATAAGATTGACGTAATTTT
GTTTATTTGATAATGAAGTTAATTCACTATTTCTTTAAGCTCAGATGATC
TTTTATTGTAGATTTATGCTAGTATTGTAAGTAGATNGTTAATACACTAT
TTCTTTAAACTCAGATGATCTGTAGTATTGTAAGTAGATTAATCATTTAG
AGATAAATAAGTACTTCACTCGCACCCCTGCCTCAGTGATCCGGTGAAGT
AAAAGAATCTCTTTGGGGTAATCAAGAACTAGTAAATAAGTCTTCGCGTG
GTTCTTTTTATATTAATCATTACATATGTCAAGTTGTATTTTCAATAGAG
GTCTTGCGTTACGTAATTTCCGCCATTATGGGATAAAACATTCGATTTCA
TAGAGGCGATCCGTTATGCAAATTGAACGTTTTACTCCATAATGGTGAAA
ATCACGAAATACTTAACGAAATGTGAAAAACCTCTATAGCGTTTTTGAAG
CAAACTGCTGGGTTTATCTTGAGTAATAGTACTTTTATCGGGGTTAGGGT
TCGGCTGCTTTTTTCGGCTATAGAAAAAGGACACTGATTCAGGGGTGTGC
TATTGTAATTTTCTTTTCGCTGTATAAACTATAAAGTAAGAACCAACTTT
TCTTTTTTTTTTGTTCGTGGTATCTGCATAATATTTGCTTCAAGTTTTTG
ATAAAAATTATCTCTTTAAATCTATTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028138-exon-sc0000665-1575043694:53710..53873 | TCONS_00028138-exon-sc0000665-1575043694:53710..53873 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1575043694:52414..52615 | TCONS_00028138-exon-sc0000665-1575043694:52414..52615 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1575043694:50191..50489 | TCONS_00028138-exon-sc0000665-1575043694:50191..50489 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1575043694:48444..49338 | TCONS_00028138-exon-sc0000665-1575043694:48444..49338 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1510915933:53710..53873 | TCONS_00028138-exon-sc0000665-1510915933:53710..53873 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1510915933:52414..52615 | TCONS_00028138-exon-sc0000665-1510915933:52414..52615 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1510915933:50191..50489 | TCONS_00028138-exon-sc0000665-1510915933:50191..50489 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1510915933:48444..49338 | TCONS_00028138-exon-sc0000665-1510915933:48444..49338 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1491911889:53710..53873 | TCONS_00028138-exon-sc0000665-1491911889:53710..53873 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1491911889:52414..52615 | TCONS_00028138-exon-sc0000665-1491911889:52414..52615 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1491911889:50191..50489 | TCONS_00028138-exon-sc0000665-1491911889:50191..50489 | Clytia hemisphaerica | exon |
| TCONS_00028138-exon-sc0000665-1491911889:48444..49338 | TCONS_00028138-exon-sc0000665-1491911889:48444..49338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000665 | supercontig | sc0000665:48444..53873 - |
Blast
The following BLAST results are available for this feature:
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