TCONS_00028139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028139
Unique NameTCONS_00028139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028139 ID=TCONS_00028139|Name=TCONS_00028139|organism=Clytia hemisphaerica|type=transcript|length=2087bp
tactaatgaaaacaatgtttttcatttttttaaattgtcattcatcaatg
ttttacagaccctcttgataattaatagtttttaatcgtgaacaataaat
gcagcagcagaatgattggttaaaaagaaatacaaattttacgaatttgt
aattaaaaaagtttaatttcatatcaaattttaatgtcagggacagagat
agaacaaggctttttcaaatgtgcgttatccagctccgctataacatatc
cctggtttTACCATTCTTTCTTACCGGCTTTTATccgaaaactatttttt
tcatcgGTCCTATCCAATTAagtaaaagcccgaagggctggaAATAATCC
TCTAAACTTTCCcaggaaagaaaaaatgaagccttaaaatatgcgcattt
tcgacgacggattgaatttagcgatttctttgttttcgagtgatactttt
ttcaaaatctagtggttaattttactttcaatctagcatttgtgtgaaaa
ccaggcggcgggggtactaggtttgcaaggtgacgggtatgtccgagccg
aaaatcgaaaattgatcctttgagagacaaaattttgatgattttgggac
cctttgagaaactttttcctaaattttggtagattttttccgaattttgg
tttgattttcaccaaattatgGTCGTAATTTCTgcaaatcgtgacccttt
gagagaaaccccccccccgggtccgCGCTAGGCTGCgtaactttggtagg
atttagcggcttcaaatcctacctaGAAGATTCGCTTCTAGGGTTTTTCT
TCTTCGGGTTTTTACTTCATCAGTCCTATCACACGCAAGTCCTAAACTAA
CGATGCTCAATGATTCTTTGGAGACTTTAGCAATAATGTATCTAGAAAGA
CCAAACCAATGTAAAACTGTTATATTTTCTTCCAGAAGAGAATCTTCAAT
GATTCAGCTATTTTTAGTGTTGGGTTCAAGTGTGATGATTTCTATTAAAT
AATTTGCATCCGCTTATTTCAGAATTGAATCTTCAGACTTAGATGGAAAC
AACCGGAAAATCATCTTGCAAGCGGACAACCTTTACATTCTTGCTATCAG
CCTTTACAACAATTACATTTATTTTACGGACTTGGTAACGAAATCTCTAA
TGCGTGTAGAAAAGAAAGGGAACGGACATCAAGAATTGTTGGATGGTGGC
TTGAATAGATACCCTAAGGGAAtccgaattttttcaaaatcaaaacaaaa
ctGCACAAGAACATTATGCCACAAAGACATAACAAGATGTACAGATATTT
GTATGCCATCAAACAATCTCGTTCATTGCAGTTGTCCCATCAATAAAACA
CTAACTGATGGATATAGGTGTATACAAACTGCAAAGGCCGGACTTAACTG
CAGCGATACGATGACGTCTTTCATATGTTCTGATGAGTCAAAATGTATCT
CAAAAGCTTCGATTTGTGATGGTTACTACGACTGCTTTGATGGTTCAGAT
GAACAAAATTGCACATCACAATCGACCATATTTCCATCAACATCATTGTC
ATTATCGTATCAGACATCTTTACCAACTTCCACTGTGTTCAAACCGTCCA
AATCAACAATGGAATTCTCTTTAAAAACAAGCTCTGCAATACATCAATCG
ACAGCCGACAAGGATAGTTCAGCAACACTCTATTCTTCAAGTATCAGTCC
TTCTACatcaacaatgacgtcatcttctTCTTCGGTAATAACAAGCAATC
ATAGTTCAGCAACACTCCGTTCTTTAAGTATCATTCCTTCTACAccaaca
atgacgtcatcttctTCTTCGGTAACAACAAGCAATCATAGTTCAGCAAC
ACTCCATTCTTCAAGTATCAGTCCTTCTACatcaacaatgacgtcatctt
cttcttcagtaACGACAAGCAATCATAGCTCAGCAACACTCCATTCTTCA
AGTATCAGTCCTTCTACatcaacaatgacgtcatcttcttcttcagtaAC
GACAAGCAATCATTCAGCAACACTCCATTCTTCAAGTATCAGTCCTTCTA
CatcaacaatgacgtcatcttctTCTTCGGTAACANN
Run BLAST on NCBI

transcript from alignment at sc0000665:56289..61988-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028139 ID=TCONS_00028139|Name=TCONS_00028139|organism=Clytia hemisphaerica|type=transcript|length=5700bp|location=Sequence derived from alignment at sc0000665:56289..61988- (Clytia hemisphaerica)
TACTAATGAAAACAATGTTTTTCATTTTTTTAAATTGTCATTCATCAATG
TTTTACAGACCCTCTTGATAATTAATAGTTTTTAATCGTGAACAATAAAT
GCAGCAGCAGAATGATTGGTTAAAAAGAAATACAAATTTTACGAATTTGT
AATTAAAAAAGTTTAATTTCATATCAAATTTTAATGTCAGGGACAGAGAT
AGAACAAGGCTTTTTCAAATGTGCGTTATCCAGCTCCGCTATAACATATC
CCTGGTTTTACCATTCTTTCTTACCGGCTTTTATCCGAAAACTATTTTTT
TCATCGGTCCTATCCAATTAAGTAAAAGCCCGAAGGGCTGGAAATAATCC
TCTAAACTTTCCCAGGAAAGAAAAAATGAAGCCTTAAAATATGCGCATTT
TCGACGACGGATTGAATTTAGCGATTTCTTTGTTTTCGAGTGATACTTTT
TTCAAAATCTAGTGGTTAATTTTACTTTCAATCTAGCATTTGTGTGAAAA
CCAGGCGGCGGGGGTACTAGGTTTGCAAGGTGACGGGTATGTCCGAGCCG
AAAATCGAAAATTGATCCTTTGAGAGACAAAATTTTGATGATTTTGGGAC
CCTTTGAGAAACTTTTTCCTAAATTTTGGTAGATTTTTTCCGAATTTTGG
TTTGATTTTCACCAAATTATGGTCGTAATTTCTGCAAATCGTGACCCTTT
GAGAGAAACCCCCCCCCCGGGTCCGCGCTAGGCTGCGTAACTTTGGTAGG
ATTTAGCGGCTTCAAATCCTACCTAGAAGATTCGCTTCTAGGGTTTTTCT
TCTTCGGGTTTTTACTTCATCAGTCCTATCACACGCAAGTCCTAAACTAA
CGATGCTCAATGATTCTTTGGAGACTTTAGCAATAATGTATCTAGAAAGA
CCAAACCAATGTAAAACTGTTATATTTTCTTCCAGAAGAGAATCTTCAAT
GATTCAGCTATTTTTAGTGTTGGGTTCAAGTGTGATGATTTCTATTAAAT
AATTTGCATCCGCTTATTTCAGAATTGAATCTTCAGACTTAGATGGAAAC
AACCGGAAAATCATCTTGCAAGCGGACAACCTTTACATTCTTGCTATCAG
CCTTTACAACAATTACATTTATTTTACGGACTTGGTAACGAAATCTCTAA
TGCGTGTAGAAAAGAAAGGGAACGGACATCAAGAATTGTTGGATGGTGGC
TTGAATAGATACCCTAAGGGAATCCGAATTTTTTCAAAATCAAAACAAAA
CTGTATGTTCTGTCATAAACTTTTAATTACCCTTTCACTCCCGGAGCTTT
GCACTTTTTGAAAAAAGAAATTCAAACGTTTCCCCGAAACCAGCCTATTT
TCCTCAAAAGTTTATGTTCTTTCCAATGGTGGCTACGAGAGTTCCGGAAA
TGTCTTAGTTCCGGAGATACAGCCTGTCAAAGTTGGGACCCGGAAGCACC
CGTCAGACGGGTTCCTGGGAGTGAAAGGGTTAATCTTGGATTCTCAGATC
GCACAAATCAATACATCTTCCTGCTTTGGTTTATAATTTATAATTTAATA
CTTATAGTTCTTCGACTTTGATCTTCGATTGAATAAGCTCTATATTTTAA
TGACACGTTTGGAAATTAATTTTGAGTGCACCATCACAAAGATTTTCTAT
TATTTCAATTTTATTTCAATTAAGGCACAAGAACATTATGCCACAAAGAC
ATAACAAGATGTACAGATATTTGTATGCCATCAAACAATCTCGTTCATTG
CAGTTGTCCCATCAATAAAACACTAACTGATGGATATAGGTAAGGTATAG
ATGCACATATATATGCACGGTAGTGAAATAGGGGAATATATATAATCTTT
AACTGAAACACACTCGAACATTAATCCTTCAGTTCATTGGAGGGCCGGTA
AAAAGCCATTTTCAGACCGTATAATACGTTATCTGCCGTCTAAGGGTTTA
AGAGCCATTTAGTAAAATAAAAAACACCTCAAAAATCGTTGGAATCACTT
TCTAACATGCCCCTCTAGCATTCTGAGCAGTTTGAAGCAGTTTTGAGATT
TCAAAAATTTCCCTTAACCCTTGAATGGCACACTGATTTTTCAACATAGC
AATTATTTTTTCTTCATAAAAATCAAACTTCAAATGGTGATTGTGGCTCT
AAAAATTGGTTCTAGACAAATGTTTTGGCACCGTTGAAGACTCTCGGCCT
CAGTTTTCTAAAACAACGAAAGAATTTTGGCCGAAAACGCAGTGGTTTTG
AGCTATATGACCATTCGATTAAGGACCGGTAAAAACCCGGGGGCACTGAC
CTTGACGGCTGACGGGGACGTGCTGCTGGAGTTTGAAAAGTGGACCCTGT
CAGATATGAATTTTTGGCAAAATTGGGACCCTGTCAGAACGAAAAATTGA
AATTATTTCCCATTTTCGCCCTGAAAAGTGTCCAAAATAATCAAAATCTC
AGATACACATCTTGATGATTAGTAAATTTGGTAACCTGTCAGATATCTTC
AGAGCCTAAAAAAGGGACCCTGACCAGCGGTACGTCTCCCTAATTTTGCC
TAAGTGCCTCCCCCTGGGGTAAAAAGCCTTTTTTAGACCGTATATATACG
TTTATCTGCCGTCTAAGGGTTAAGTATTTTTTACTGATACTTTAAAAAGA
ACAGTAGAAATTAAATTCCGAAAATCCAATTCATCATCATATTCTGATAA
TTTTAGCCCCTATTTTGAGGTCATTTTGGGAAAGTCCAATCTCCTTGATT
TTTTGGCCTGTTTTTGAGATACCCCCTTGGATTATTGATTATTATCCGCT
GGATTTGTAACGAAATTTCAAGATCTGGTTTTTTTAGGGGTACCCTCTGG
ACTAAAATTCCCTCCACTAAGGGGTAAATTTTTTTTCTGAGATTCCCAAT
TGACGAAGAAAATGTTTGATTTCATATTTTTTTTTATTTACACATGATTC
CCAAATATCTTATAAAGGTGTATACAAACTGCAAAGGCCGGACTTAACTG
CAGCGATACGATGACGTCTTTCATATGTTCTGATGAGTCAAAATGTATCT
CAAAAGCTTCGATTTGTGATGGTTACTACGACTGCTTTGATGGTTCAGAT
GAACAAAATTGCAGTAAGGAAAACGATTTGTTTTTGTGTCAATCAATCCT
AAGTCATGATATTTTGCCTGTTGGCGCTTTCAATTTATCATTTATTTATC
TGAAATTCTTGATTGTATTTGTGTATAAAGTATGCGTCAGTGAGGCCTTT
CCATTTTTTTTTTATAGATAAATCACAAATTTATTTGGATATACATATAA
TAGAAATCAAATATATTTTTTGATGAAAAATCTGAAAAACAGTGAGCAAT
GACCAAGCGGGAAAAAAAGGCAAACATGAAGCTGAAACCCTGCAAAGACC
AATGTGCAAAACTCAAAAAAATGTCCAAAAATACGTATTGAAAAATACGT
GTCTAATAAAATATAGTAATAAAAAAAACTAAGTTGAAAACTTTAATCAA
ATATTACAAATGAAATTTGTGACTTCTGCGTCTGCAGTGGTGTTAGTGAA
AGGCGAGTGTCTCCGGTGCCTCCAGGACCTCGAGCCTGGAACACACCACA
GCTGACTGAATCAGACTAAAAGAAATTTTTCTTTTTACATAAAAATATGC
TTCCGAAAATGAAGATTTATTTTTCTCACAAAGAAGTTCGCTTAAACGGG
CGCAAAATCGCTTAGTTTCTGTGCTAATTCCACCGTTGGCAGAAAAAACG
AGTGGTGTAAAAGTACTGTTTTCTCGATCGAGTATGCGATTTACATACTT
TCTTTTCTGCTCTTTCTGCATTTGCTTCATTACTCTAGCAAGATTTTGGT
TTTGGTAACTTCTGGCTGAAGGAGAAAAAACCCTCACGTCAAGAAATGCC
TTCTGTTGCCTTTGCCAAAATCCTCTTATTGTAAAATCAGCGCGGAGTTC
AGAGTCATGATCGAACCCTTTTTTGAAGAATTGGTTTCTTCTCAACATCT
TTGCTAACGATTGCAGATAGATTAGCCGTTATGTTAACCAATTCATTGTG
CCACATGTGAATAAAACCGCCAACGCGATTAAGACGGTTGCTTCTAGGTT
CACGTGCACTTGGTTCACTAACTGTAGTGAACCTAGCGAACGTGAACCTA
GAAGCGACCGTCTTAATCGGGGTGTCTCCGACGAAGAGCACTCTCTATCA
TTTTGATTGGATCATTTTGTTATTGTGTATGGAATCCACCCTTTTTTCTT
TTTTTTATTGAATACTTTTACAGAATAACGCAGACTACACCACTTACACC
ACTTGCGCATCGCAGACTGATTTCTTTTCAGTAGCTTTTCAGTAGCGTTA
ACAGGGGGTAGAGGCCAGTGTTCTGATGATCGTTTTTAGGGGGCAAAAAA
GGAAGGGGTAACAAAGGGTAGTTTGGCACCCCGATTCTTTTTTTTATCTC
ACAAATATCAGTTTTTAGTCCTTAAAAAGGAGAAATTGTTTCAAGAGGGC
GCAGAATTACCAAATTTTTCAATTTTGCCTCCCAGTGTAGGTCAAGCAAT
CACGCTACTGCTTCCTTTATCTCAAGGAAAAATCATTTAGTCTTTCAATG
ATGGTGTCATTTTAGCCCAAAATGATGTCAAAAAACTAAAAGAGAAATGC
TTTGAATTTTTGAAGGAGTTCTCTTTTTGCTTTGATCTTACTTTAACCTA
TATCCTTTAGTATTCTAAGGGTTTTCGATGCGCAAACAAAACCTTTAACT
GGCTTTTGCTAGGACGTTAACAGTCTAGTTTCTTTCTAATCTTAGACTAA
TACAGAAAGGTGTTCATAAATACAAATACTTTCTTAGGTTAAATGTATAA
AGGTATTCCCAAACAAATACAATCAAGAACTGCAGACTGAAACGCACAAA
TTGGGTACGTATTGACAATACTTAATTCGTCAAATCAACTCTATTTTCAC
TACAGCATCACAATCGACCATATTTCCATCAACATCATTGTCATTATCGT
ATCAGACATCTTTACCAACTTCCACTGTGTTCAAACCGTCCAAATCAACA
ATGGAATTCTCTTTAAAAACAAGCTCTGCAATACATCAATCGACAGCCGA
CAAGGATAGTTCAGCAACACTCTATTCTTCAAGTATCAGTCCTTCTACAT
CAACAATGACGTCATCTTCTTCTTCGGTAATAACAAGCAATCATAGTTCA
GCAACACTCCGTTCTTTAAGTATCATTCCTTCTACACCAACAATGACGTC
ATCTTCTTCTTCGGTAACAACAAGCAATCATAGTTCAGCAACACTCCATT
CTTCAAGTATCAGTCCTTCTACATCAACAATGACGTCATCTTCTTCTTCA
GTAACGACAAGCAATCATTCAGCAACACTCCATTCTTCAAGTATCAGTCC
TTCTACATCAACAATGGCGTCATCTTCTTCTTCGGTAACAACAAGCAATC
ATAGTTCAGCAAAACTCCATTCTTCAAGTATCAGTCCTTCTACATCAACA
ATGACGTCATCTTCTTCTTCAGTAACGACAAGCAATCATAGCTCAGCAAC
ACTCCATTCTTCAAGTATCAGTCCTTCTACATCAACAATGACGTCATCTT
CTTCTTCAGTAACGACAAGCAATCATTCAGCAACACTCCATTCTTCAAGT
ATCAGTCCTTCTACATCAACAATGACGTCATCTTCTTCTTCGGTAACANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015923XLOC_015923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028139-exon-sc0000665-1575043694:60737..61988TCONS_00028139-exon-sc0000665-1575043694:60737..61988Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1575043694:60200..60314TCONS_00028139-exon-sc0000665-1575043694:60200..60314Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1575043694:58876..59021TCONS_00028139-exon-sc0000665-1575043694:58876..59021Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1575043694:56667..57033TCONS_00028139-exon-sc0000665-1575043694:56667..57033Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1575043694:56289..56495TCONS_00028139-exon-sc0000665-1575043694:56289..56495Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1510915933:60737..61988TCONS_00028139-exon-sc0000665-1510915933:60737..61988Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1510915933:60200..60314TCONS_00028139-exon-sc0000665-1510915933:60200..60314Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1510915933:58876..59021TCONS_00028139-exon-sc0000665-1510915933:58876..59021Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1510915933:56667..57033TCONS_00028139-exon-sc0000665-1510915933:56667..57033Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1510915933:56289..56495TCONS_00028139-exon-sc0000665-1510915933:56289..56495Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1491911889:60737..61988TCONS_00028139-exon-sc0000665-1491911889:60737..61988Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1491911889:60200..60314TCONS_00028139-exon-sc0000665-1491911889:60200..60314Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1491911889:58876..59021TCONS_00028139-exon-sc0000665-1491911889:58876..59021Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1491911889:56667..57033TCONS_00028139-exon-sc0000665-1491911889:56667..57033Clytia hemisphaericaexon
TCONS_00028139-exon-sc0000665-1491911889:56289..56495TCONS_00028139-exon-sc0000665-1491911889:56289..56495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:56289..61988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.784482	0.391871	0.573749	1.0039	2.72473	1.83998	2.60357	3.94746	1.57444	1.16548	1.91184	1.00237	0.908359	1.09189	0.816986	0.617013	0.623414	0.830809	1.0134	0.876377	1.52118	1.96417	0.885828	1.65199	4.00437	4.43897	3.0832	3.92448	0.183431	0.359591
Blast
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BLAST of TCONS_00028139 vs. Swiss-Prot (Human)
Match: LRP1 (Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.083e-16
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 1 
Query: 1024 IESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQ-NCTRTLCHKDITRCTDICMPSNNLVH-CSCPINKTL-TDGYRCIQTAKAGLNCSDTMTSFICSDESKCISKASICDGYYDCFDGSDE 1503
            IE + LDG+NR ++L  D  +I A++L+ +Y+Y+TD  TKS+ R  K    ++ LL   L+R P  + +F   +Q +     C  +   C+++C+ S    H C+CP N  L +DG  C+       NC  T + F+C ++ KCI     CD   DC D SDE
Sbjct: 3213 IEFASLDGSNRHVVLSQDIPHIFALTLFEDYVYWTDWETKSINRAHKTTGTNKTLLISTLHR-PMDLHVFHALRQPDVPNHPCKVNNGGCSNLCLLSPGGGHKCACPTNFYLGSDGRTCVS------NC--TASQFVCKND-KCIPFWWKCDTEDDCGDHSDE 3365
The following BLAST results are available for this feature:
BLAST of TCONS_00028139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRP18.083e-1634.97Prolow-density lipoprotein receptor-related protei... [more]
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